RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 TNMDQ9H2S6 317 aa16.28■□□□□ 0.2
TRIM4-201ENST00000349062 ZHX1Q9UKY1 873 aaPredicted RBP16.28■□□□□ 0.2
TRIM4-201ENST00000349062 RIC1Q4ADV7 1423 aa16.28■□□□□ 0.2
TRIM4-201ENST00000349062 CDHR2Q9BYE9 1310 aa16.28■□□□□ 0.2
TRIM4-201ENST00000349062 hCG_1642624A0A1W2PR95 340 aa16.28■□□□□ 0.2
TRIM4-201ENST00000349062 LCORLQ8N3X6 602 aa16.28■□□□□ 0.2
TRIM4-201ENST00000349062 LEO1Q8WVC0 666 aaPredicted RBP16.28■□□□□ 0.2
TRIM4-201ENST00000349062 BCL11BQ9C0K0 894 aaPredicted RBP16.28■□□□□ 0.2
TRIM4-201ENST00000349062 CYB5R4Q7L1T6 521 aa16.27■□□□□ 0.2
TRIM4-201ENST00000349062 NUP62CLQ9H1M0 184 aa16.27■□□□□ 0.2
TRIM4-201ENST00000349062 IFIT3O14879 490 aaKnown RBP16.27■□□□□ 0.2
TRIM4-201ENST00000349062 ZSCAN25Q6NSZ9 544 aa16.27■□□□□ 0.2
TRIM4-201ENST00000349062 C8orf76Q96K31 380 aa16.27■□□□□ 0.2
TRIM4-201ENST00000349062 NR1I2O75469 434 aa16.27■□□□□ 0.19
TRIM4-201ENST00000349062 TMEM67Q5HYA8 995 aa16.27■□□□□ 0.19
TRIM4-201ENST00000349062 ISM2Q6H9L7 571 aa16.27■□□□□ 0.19
TRIM4-201ENST00000349062 CDCA7Q9BWT1 371 aaPredicted RBP16.27■□□□□ 0.19
TRIM4-201ENST00000349062 PFKFB2O60825 505 aa16.26■□□□□ 0.19
TRIM4-201ENST00000349062 NTSR2O95665 410 aa16.26■□□□□ 0.19
TRIM4-201ENST00000349062 VGLL2Q8N8G2 317 aa16.26■□□□□ 0.19
TRIM4-201ENST00000349062 UQCRFS1P1P0C7P4 283 aa16.26■□□□□ 0.19
TRIM4-201ENST00000349062 DYNLL1P63167 89 aaKnown RBP16.26■□□□□ 0.19
TRIM4-201ENST00000349062 TTF1Q15361 905 aaPredicted RBP16.26■□□□□ 0.19
TRIM4-201ENST00000349062 IL17RAQ96F46 866 aa16.26■□□□□ 0.19
TRIM4-201ENST00000349062 USP28Q96RU2 1077 aa16.26■□□□□ 0.19
TRIM4-201ENST00000349062 EXOSC10Q01780 885 aaKnown RBP16.26■□□□□ 0.19
TRIM4-201ENST00000349062 C17orf53Q8N3J3 647 aaPredicted RBP16.26■□□□□ 0.19
TRIM4-201ENST00000349062 CDC5LQ99459 802 aaKnown RBP16.26■□□□□ 0.19
TRIM4-201ENST00000349062 NOL7Q9UMY1 257 aaKnown RBP16.26■□□□□ 0.19
TRIM4-201ENST00000349062 GLI3P10071 1580 aa16.25■□□□□ 0.19
TRIM4-201ENST00000349062 MROH5Q6ZUA9 1318 aa16.25■□□□□ 0.19
TRIM4-201ENST00000349062 ANTXR2P58335 489 aa16.25■□□□□ 0.19
TRIM4-201ENST00000349062 TSGA10IPQ3SY00 556 aa16.25■□□□□ 0.19
TRIM4-201ENST00000349062 DRC7Q8IY82 874 aa16.25■□□□□ 0.19
TRIM4-201ENST00000349062 SMARCC1Q92922 1105 aaPredicted RBP16.25■□□□□ 0.19
TRIM4-201ENST00000349062 MARCKSP29966 332 aaPredicted RBP16.25■□□□□ 0.19
TRIM4-201ENST00000349062 ANKIB1Q9P2G1 1089 aa16.25■□□□□ 0.19
TRIM4-201ENST00000349062 NEDD4P46934 1319 aa16.25■□□□□ 0.19
TRIM4-201ENST00000349062 A0A0U1RQG5 324 aaPredicted RBP16.24■□□□□ 0.19
TRIM4-201ENST00000349062 RFC4P35249 363 aa16.24■□□□□ 0.19
TRIM4-201ENST00000349062 PARP10Q53GL7 1025 aa16.24■□□□□ 0.19
TRIM4-201ENST00000349062 LUZP1Q86V48 1076 aa16.24■□□□□ 0.19
TRIM4-201ENST00000349062 ZKSCAN5Q9Y2L8 839 aa16.24■□□□□ 0.19
TRIM4-201ENST00000349062 DISP2A7MBM2 1401 aa16.24■□□□□ 0.19
TRIM4-201ENST00000349062 METAP2P50579 478 aaKnown RBP eCLIP16.24■□□□□ 0.19
TRIM4-201ENST00000349062 IFNL3Q8IZI9 196 aa16.24■□□□□ 0.19
TRIM4-201ENST00000349062 PGBD1Q96JS3 809 aa16.24■□□□□ 0.19
TRIM4-201ENST00000349062 RANBP6O60518 1105 aaKnown RBP16.24■□□□□ 0.19
TRIM4-201ENST00000349062 SCAND2PQ9GZW5 306 aaPredicted RBP16.24■□□□□ 0.19
TRIM4-201ENST00000349062 RTCBQ9Y3I0 505 aaKnown RBP16.24■□□□□ 0.19
TRIM4-201ENST00000349062 NLRP3Q96P20 1036 aa16.23■□□□□ 0.19
TRIM4-201ENST00000349062 STRBPQ96SI9 672 aaKnown RBP16.23■□□□□ 0.19
TRIM4-201ENST00000349062 SLC26A6Q9BXS9 759 aa16.23■□□□□ 0.19
TRIM4-201ENST00000349062 BAZ2BQ9UIF8 2168 aaKnown RBP16.23■□□□□ 0.19
TRIM4-201ENST00000349062 ADCY5O95622 1261 aa16.23■□□□□ 0.19
TRIM4-201ENST00000349062 EVX2Q03828 476 aa16.23■□□□□ 0.19
TRIM4-201ENST00000349062 STK38Q15208 465 aa16.23■□□□□ 0.19
TRIM4-201ENST00000349062 MAP3K11Q16584 847 aa16.23■□□□□ 0.19
TRIM4-201ENST00000349062 CAVIN4Q5BKX8 364 aa16.23■□□□□ 0.19
TRIM4-201ENST00000349062 KIF3AQ9Y496 699 aa16.23■□□□□ 0.19
TRIM4-201ENST00000349062 ITGB4P16144 1822 aa16.23■□□□□ 0.19
TRIM4-201ENST00000349062 A0A1B0GVL5 298 aa16.23■□□□□ 0.19
TRIM4-201ENST00000349062 RESTQ13127 1097 aa16.23■□□□□ 0.19
TRIM4-201ENST00000349062 ADGRA1Q86SQ6 560 aa16.23■□□□□ 0.19
TRIM4-201ENST00000349062 CCAR1Q8IX12 1150 aaKnown RBP16.23■□□□□ 0.19
TRIM4-201ENST00000349062 THRAP3Q9Y2W1 955 aaKnown RBP16.23■□□□□ 0.19
TRIM4-201ENST00000349062 CCDC69A6NI79 296 aa16.22■□□□□ 0.19
TRIM4-201ENST00000349062 GOLGA8AA7E2F4 631 aa16.22■□□□□ 0.19
TRIM4-201ENST00000349062 BIN1O00499 593 aa16.22■□□□□ 0.19
TRIM4-201ENST00000349062 FAM196AQ6ZSG2 479 aa16.22■□□□□ 0.19
TRIM4-201ENST00000349062 MFSD6Q6ZSS7 791 aa16.22■□□□□ 0.19
TRIM4-201ENST00000349062 TTC12Q9H892 705 aaPredicted RBP16.22■□□□□ 0.19
TRIM4-201ENST00000349062 EPB41L4AQ9HCS5 686 aaPredicted RBP16.22■□□□□ 0.19
TRIM4-201ENST00000349062 CCDC39Q9UFE4 941 aa16.22■□□□□ 0.19
TRIM4-201ENST00000349062 NBPF3Q9H094 633 aa16.22■□□□□ 0.19
TRIM4-201ENST00000349062 AATFQ9NY61 560 aaKnown RBP eCLIP16.22■□□□□ 0.19
TRIM4-201ENST00000349062 FBXO3Q9UK99 471 aa16.22■□□□□ 0.19
TRIM4-201ENST00000349062 FDPSP14324 419 aaKnown RBP16.21■□□□□ 0.19
TRIM4-201ENST00000349062 SYNE3Q6ZMZ3 975 aa16.21■□□□□ 0.19
TRIM4-201ENST00000349062 DNAJC25Q9H1X3 360 aa16.21■□□□□ 0.19
TRIM4-201ENST00000349062 ZSWIM5Q9P217 1185 aa16.21■□□□□ 0.19
TRIM4-201ENST00000349062 LAMB4A4D0S4 1761 aa16.21■□□□□ 0.19
TRIM4-201ENST00000349062 HMGN5P82970 282 aaKnown RBP16.21■□□□□ 0.19
TRIM4-201ENST00000349062 ANO6Q4KMQ2 910 aa16.21■□□□□ 0.19
TRIM4-201ENST00000349062 MB21D2Q8IYB1 491 aaPredicted RBP16.21■□□□□ 0.19
TRIM4-201ENST00000349062 FSIP1Q8NA03 581 aa16.21■□□□□ 0.19
TRIM4-201ENST00000349062 ARHGEF1Q92888 912 aaKnown RBP16.21■□□□□ 0.19
TRIM4-201ENST00000349062 AK7Q96M32 723 aa16.21■□□□□ 0.19
TRIM4-201ENST00000349062 SDF4Q9BRK5 362 aa16.21■□□□□ 0.19
TRIM4-201ENST00000349062 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.21■□□□□ 0.19
TRIM4-201ENST00000349062 SASS6Q6UVJ0 657 aa16.21■□□□□ 0.18
TRIM4-201ENST00000349062 ALG1Q9BT22 464 aa16.21■□□□□ 0.18
TRIM4-201ENST00000349062 SLC12A7Q9Y666 1083 aa16.21■□□□□ 0.18
TRIM4-201ENST00000349062 ABCA3Q99758 1704 aa16.21■□□□□ 0.18
TRIM4-201ENST00000349062 SHANK3Q9BYB0 1731 aa16.2■□□□□ 0.18
TRIM4-201ENST00000349062 CCDC192P0DO97 292 aa16.2■□□□□ 0.18
TRIM4-201ENST00000349062 CCDC73Q6ZRK6 1079 aa16.2■□□□□ 0.18
TRIM4-201ENST00000349062 NACAP1Q9BZK3 213 aa16.2■□□□□ 0.18
TRIM4-201ENST00000349062 ANGEL1Q9UNK9 670 aaKnown RBP16.2■□□□□ 0.18
TRIM4-201ENST00000349062 MINPP1Q9UNW1 487 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms