RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 DESI2Q9BSY9 194 aa7.83□□□□□ -1.16
VPS39-202ENST00000348544 MRPL44Q9H9J2 332 aaKnown RBP7.83□□□□□ -1.16
VPS39-202ENST00000348544 POLR3EQ9NVU0 708 aa7.83□□□□□ -1.16
VPS39-202ENST00000348544 GEMIN8Q9NWZ8 242 aaKnown RBP7.83□□□□□ -1.16
VPS39-202ENST00000348544 ZNF219Q9P2Y4 722 aaPredicted RBP7.83□□□□□ -1.16
VPS39-202ENST00000348544 TUBE1Q9UJT0 475 aa7.83□□□□□ -1.16
VPS39-202ENST00000348544 FAN1Q9Y2M0 1017 aa7.83□□□□□ -1.16
VPS39-202ENST00000348544 A0A1B0GUL7 405 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 EIF3CLB5ME19 914 aaKnown RBP7.82□□□□□ -1.16
VPS39-202ENST00000348544 KIF28PB7ZC32 967 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 ANKRD65E5RJM6 399 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 CBFA2T2O43439 604 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 YEATS4O95619 227 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 MAGEA9P43362 315 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 TEFQ10587 303 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 KARSQ15046 597 aaKnown RBP7.82□□□□□ -1.16
VPS39-202ENST00000348544 WWC2Q6AWC2 1192 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 KSR2Q6VAB6 950 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 TC2NQ8N9U0 490 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 EIF3CQ99613 913 aaKnown RBP7.82□□□□□ -1.16
VPS39-202ENST00000348544 BAG1Q99933 345 aaPredicted RBP7.82□□□□□ -1.16
VPS39-202ENST00000348544 GPHNQ9NQX3 736 aaPredicted RBP7.82□□□□□ -1.16
VPS39-202ENST00000348544 FANCLQ9NW38 375 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 AKAP2Q9Y2D5 859 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 UTYO14607 1347 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 A0A0U1RQJ8 604 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 PRAMEF22A3QJZ6 481 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 TFRCP02786 760 aaKnown RBP7.82□□□□□ -1.16
VPS39-202ENST00000348544 ATP5JP18859 108 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 GUCY2CP25092 1073 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 USP5P45974 858 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 PNOCQ13519 176 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 MTF1Q14872 753 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 TTC31Q49AM3 519 aaPredicted RBP7.82□□□□□ -1.16
VPS39-202ENST00000348544 MCMDC2Q4G0Z9 681 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 HSP90AA4PQ58FG1 418 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 EPHA10Q5JZY3 1008 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 MYSM1Q5VVJ2 828 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 JAKMIP3Q5VZ66 844 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 LEKR1Q6ZMV7 388 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 HNRNPLLQ8WVV9 542 aaKnown RBP7.82□□□□□ -1.16
VPS39-202ENST00000348544 ATRIPQ8WXE1 791 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 RAB21Q9UL25 225 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 JRKLQ9Y4A0 524 aa7.82□□□□□ -1.16
VPS39-202ENST00000348544 CUTAO60888 179 aa7.81□□□□□ -1.16
VPS39-202ENST00000348544 IVLP07476 585 aa7.81□□□□□ -1.16
VPS39-202ENST00000348544 CMA1P23946 247 aa7.81□□□□□ -1.16
VPS39-202ENST00000348544 CDC27P30260 824 aa7.81□□□□□ -1.16
VPS39-202ENST00000348544 ADKP55263 362 aaKnown RBP7.81□□□□□ -1.16
VPS39-202ENST00000348544 CHMP4BP1P59074 171 aa7.81□□□□□ -1.16
VPS39-202ENST00000348544 PDE4BQ07343 736 aa7.81□□□□□ -1.16
VPS39-202ENST00000348544 LRRC31Q6UY01 552 aa7.81□□□□□ -1.16
VPS39-202ENST00000348544 DDX46Q7L014 1031 aaKnown RBP7.81□□□□□ -1.16
VPS39-202ENST00000348544 CCDC12Q8WUD4 166 aaPredicted RBP7.81□□□□□ -1.16
VPS39-202ENST00000348544 ABCB6Q9NP58 842 aa7.81□□□□□ -1.16
VPS39-202ENST00000348544 DBF4Q9UBU7 674 aaPredicted RBP7.81□□□□□ -1.16
VPS39-202ENST00000348544 PUF60Q9UHX1 559 aaKnown RBP7.81□□□□□ -1.16
VPS39-202ENST00000348544 L1RE1Q9UN81 338 aa7.81□□□□□ -1.16
VPS39-202ENST00000348544 GOLGA6L9A6NEM1 432 aa7.81□□□□□ -1.16
VPS39-202ENST00000348544 E7EWF7 191 aa7.81□□□□□ -1.16
VPS39-202ENST00000348544 STX10O60499 249 aa7.81□□□□□ -1.16
VPS39-202ENST00000348544 HMGB1P09429 215 aaKnown RBP7.81□□□□□ -1.16
VPS39-202ENST00000348544 BMP6P22004 513 aa7.81□□□□□ -1.16
VPS39-202ENST00000348544 SRGAP1Q7Z6B7 1085 aa7.81□□□□□ -1.16
VPS39-202ENST00000348544 FOXP4Q8IVH2 680 aaPredicted RBP7.81□□□□□ -1.16
VPS39-202ENST00000348544 MSANTD4Q8NCY6 345 aa7.81□□□□□ -1.16
VPS39-202ENST00000348544 ZNF274Q96GC6 653 aaPredicted RBP7.81□□□□□ -1.16
VPS39-202ENST00000348544 MARF1Q9Y4F3 1742 aaKnown RBP7.81□□□□□ -1.16
VPS39-202ENST00000348544 RFX7Q2KHR2 1363 aa7.81□□□□□ -1.16
VPS39-202ENST00000348544 SLIT1O75093 1534 aa7.8□□□□□ -1.16
VPS39-202ENST00000348544 LOC102724159A0A0B4J2E5 919 aa7.8□□□□□ -1.16
VPS39-202ENST00000348544 MARCKSP29966 332 aaPredicted RBP7.8□□□□□ -1.16
VPS39-202ENST00000348544 CORO7P57737 925 aa7.8□□□□□ -1.16
VPS39-202ENST00000348544 PWP2Q15269 919 aaKnown RBP7.8□□□□□ -1.16
VPS39-202ENST00000348544 TNNI3KQ59H18 835 aa7.8□□□□□ -1.16
VPS39-202ENST00000348544 ANO1Q5XXA6 986 aa7.8□□□□□ -1.16
VPS39-202ENST00000348544 HDXQ7Z353 690 aa7.8□□□□□ -1.16
VPS39-202ENST00000348544 GOLGA6L1Q8N7Z2 621 aa7.8□□□□□ -1.16
VPS39-202ENST00000348544 PDILTQ8N807 584 aa7.8□□□□□ -1.16
VPS39-202ENST00000348544 LINS1Q8NG48 757 aa7.8□□□□□ -1.16
VPS39-202ENST00000348544 PLEKHA4Q9H4M7 779 aa7.8□□□□□ -1.16
VPS39-202ENST00000348544 FPGT-TNNI3KV9GXZ4 949 aa7.8□□□□□ -1.16
VPS39-202ENST00000348544 IGKV5-2P06315 115 aa7.8□□□□□ -1.16
VPS39-202ENST00000348544 CHRM1P11229 460 aaPredicted RBP7.8□□□□□ -1.16
VPS39-202ENST00000348544 TFCP2Q12800 502 aa7.8□□□□□ -1.16
VPS39-202ENST00000348544 SHC4Q6S5L8 630 aa7.8□□□□□ -1.16
VPS39-202ENST00000348544 METTL16Q86W50 562 aaKnown RBP7.8□□□□□ -1.16
VPS39-202ENST00000348544 MSL3Q8N5Y2 521 aaKnown RBP7.8□□□□□ -1.16
VPS39-202ENST00000348544 DRC1Q96MC2 740 aa7.8□□□□□ -1.16
VPS39-202ENST00000348544 SLC26A8Q96RN1 970 aa7.8□□□□□ -1.16
VPS39-202ENST00000348544 DBNDD2Q9BQY9 259 aa7.8□□□□□ -1.16
VPS39-202ENST00000348544 C19orf44Q9H6X5 657 aa7.8□□□□□ -1.16
VPS39-202ENST00000348544 BRMS1Q9HCU9 246 aa7.8□□□□□ -1.16
VPS39-202ENST00000348544 TOMM22Q9NS69 142 aa7.8□□□□□ -1.16
VPS39-202ENST00000348544 HPSEQ9Y251 543 aa7.8□□□□□ -1.16
VPS39-202ENST00000348544 PALLDQ8WX93 1383 aa7.8□□□□□ -1.16
VPS39-202ENST00000348544 BTBD11A6QL63 1104 aa7.79□□□□□ -1.16
VPS39-202ENST00000348544 PHACTR2O75167 634 aa7.79□□□□□ -1.16
VPS39-202ENST00000348544 TRHP20396 242 aaPredicted RBP7.79□□□□□ -1.16
VPS39-202ENST00000348544 SYKP43405 635 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms