RNA–Protein interactions for RNA: ENST00000344113.8

SYNE2-202, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE2, Length 21,777 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-202ENST00000344113 PPP1R9AQ9ULJ8 1098 aa4.23□□□□□ -1.73
SYNE2-202ENST00000344113 KDM2BQ8NHM5 1336 aa4.23□□□□□ -1.73
SYNE2-202ENST00000344113 CCDC160A6NGH7 325 aa4.23□□□□□ -1.73
SYNE2-202ENST00000344113 KRT5P13647 590 aa4.23□□□□□ -1.73
SYNE2-202ENST00000344113 CCDC153Q494R4 210 aa4.23□□□□□ -1.73
SYNE2-202ENST00000344113 CFAP157Q5JU67 520 aa4.23□□□□□ -1.73
SYNE2-202ENST00000344113 ITPKCQ96DU7 683 aa4.23□□□□□ -1.73
SYNE2-202ENST00000344113 EMC3Q9P0I2 261 aa4.23□□□□□ -1.73
SYNE2-202ENST00000344113 CTTNBP2NLQ9P2B4 639 aa4.23□□□□□ -1.73
SYNE2-202ENST00000344113 COPG1Q9Y678 874 aaKnown RBP4.23□□□□□ -1.73
SYNE2-202ENST00000344113 VAV2P52735 878 aa4.23□□□□□ -1.73
SYNE2-202ENST00000344113 TFIP11Q9UBB9 837 aaKnown RBP4.23□□□□□ -1.73
SYNE2-202ENST00000344113 ELF1P32519 619 aa4.23□□□□□ -1.73
SYNE2-202ENST00000344113 MXRA7P84157 204 aa4.23□□□□□ -1.73
SYNE2-202ENST00000344113 JARID2Q92833 1246 aaPredicted RBP4.23□□□□□ -1.73
SYNE2-202ENST00000344113 MMTAG2Q9BU76 263 aaKnown RBP4.23□□□□□ -1.73
SYNE2-202ENST00000344113 L2HGDHQ9H9P8 463 aa4.23□□□□□ -1.73
SYNE2-202ENST00000344113 HYPKQ9NX55 129 aa4.23□□□□□ -1.73
SYNE2-202ENST00000344113 UBAP1Q9NZ09 502 aa4.23□□□□□ -1.73
SYNE2-202ENST00000344113 ERICH2A1L162 156 aa4.23□□□□□ -1.73
SYNE2-202ENST00000344113 CFAP36Q96G28 342 aa4.23□□□□□ -1.73
SYNE2-202ENST00000344113 TNMDQ9H2S6 317 aa4.23□□□□□ -1.73
SYNE2-202ENST00000344113 ZHX3Q9H4I2 956 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 BCL2L12Q9HB09 334 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 LRPPRCP42704 1394 aaKnown RBP4.22□□□□□ -1.73
SYNE2-202ENST00000344113 CTAGE15A4D2H0 777 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 CTAGE8P0CG41 777 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 MRPS35P82673 323 aaKnown RBP4.22□□□□□ -1.73
SYNE2-202ENST00000344113 NCAPH2Q6IBW4 605 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 CWC27Q6UX04 472 aaKnown RBP4.22□□□□□ -1.73
SYNE2-202ENST00000344113 CTAGE4Q8IX94 777 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 TAF4BQ92750 862 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 GCC1Q96CN9 775 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 LMNAP02545 664 aaKnown RBP4.22□□□□□ -1.73
SYNE2-202ENST00000344113 SMTNP53814 917 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 CLUAP1Q96AJ1 413 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 FLOT2Q14254 428 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 MCTP1Q6DN14 999 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 ATP6V0A4Q9HBG4 840 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 CFAP73A6NFT4 308 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 ARHGEF9O43307 516 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 ESRRBO95718 433 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 DNAJC17Q9NVM6 304 aaKnown RBP4.22□□□□□ -1.73
SYNE2-202ENST00000344113 CASTP20810 708 aaKnown RBP4.22□□□□□ -1.73
SYNE2-202ENST00000344113 MAP3K11Q16584 847 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 GLE1Q53GS7 698 aaKnown RBP4.22□□□□□ -1.73
SYNE2-202ENST00000344113 ARHGEF1Q92888 912 aaKnown RBP4.22□□□□□ -1.73
SYNE2-202ENST00000344113 HDAC9Q9UKV0 1011 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 RTN3O95197 1032 aaPredicted RBP4.22□□□□□ -1.73
SYNE2-202ENST00000344113 FAM200BP0CF97 657 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 EIF2S2P20042 333 aaKnown RBP4.22□□□□□ -1.73
SYNE2-202ENST00000344113 RAP1GDS1P52306 607 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 FSD1Q9BTV5 496 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 U3KPZ7 1027 aaPredicted RBP4.22□□□□□ -1.73
SYNE2-202ENST00000344113 FMN1Q68DA7 1419 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 CETN3O15182 167 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 CCDC166P0CW27 439 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 CCDC77Q9BR77 488 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 CCNCP24863 283 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 PPP2R5AQ15172 486 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 ATP2A3Q93084 1043 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 RSPH9Q9H1X1 276 aaPredicted RBP4.22□□□□□ -1.73
SYNE2-202ENST00000344113 TMED5Q9Y3A6 229 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 PALM2-AKAP2B1ALY0 433 aaPredicted RBP4.22□□□□□ -1.73
SYNE2-202ENST00000344113 HNRNPCL2B2RXH8 293 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 HNRNPCL1O60812 293 aaKnown RBP4.22□□□□□ -1.73
SYNE2-202ENST00000344113 KDM4AO75164 1064 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 KRT38O76015 456 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 KRT75O95678 551 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 ALDH16A1Q8IZ83 802 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 KIFAP3Q92845 792 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 ANO10Q9NW15 660 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 GOLGA4Q13439 2230 aaKnown RBP4.22□□□□□ -1.73
SYNE2-202ENST00000344113 GNL1P36915 607 aaPredicted RBP4.22□□□□□ -1.73
SYNE2-202ENST00000344113 ZC3H12AQ5D1E8 599 aaKnown RBP4.22□□□□□ -1.73
SYNE2-202ENST00000344113 NME8Q8N427 588 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 SENP7Q9BQF6 1050 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 HNRNPH2P55795 449 aaKnown RBP4.22□□□□□ -1.73
SYNE2-202ENST00000344113 RASA3Q14644 834 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 RAPGEF4Q8WZA2 1011 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 GIT1Q9Y2X7 761 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 TBKBP1A7MCY6 615 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 PENKP01210 267 aaPredicted RBP4.22□□□□□ -1.73
SYNE2-202ENST00000344113 KRT2P35908 639 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 GRAMD4Q6IC98 578 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 ATP6V0A2Q9Y487 856 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 FAM170AA1A519 330 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 XBP1P17861 261 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 INF2Q27J81 1249 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 DDX19BQ9UMR2 479 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 EIF3CLB5ME19 914 aaKnown RBP4.22□□□□□ -1.73
SYNE2-202ENST00000344113 GKAP1Q5VSY0 366 aaPredicted RBP4.22□□□□□ -1.73
SYNE2-202ENST00000344113 DENND2CQ68D51 928 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 TBC1D2Q9BYX2 928 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 TRIM37O94972 964 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 MAN1A1P33908 653 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 SEMA3FQ13275 785 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 SYNE3Q6ZMZ3 975 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 CGREF1Q99674 301 aa4.22□□□□□ -1.73
SYNE2-202ENST00000344113 TUBB6Q9BUF5 446 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms