RNA–Protein interactions for RNA: ENST00000343599.5

ZNF540-202, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ZNF540, Length 3,073 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-202ENST00000343599 SAMD7Q7Z3H4 446 aa9.09□□□□□ -0.95
ZNF540-202ENST00000343599 ZC3H12CQ9C0D7 883 aaKnown RBP9.09□□□□□ -0.95
ZNF540-202ENST00000343599 PRAMEF22A3QJZ6 481 aa9.08□□□□□ -0.96
ZNF540-202ENST00000343599 XRCC5P13010 732 aaKnown RBP9.08□□□□□ -0.96
ZNF540-202ENST00000343599 GOLGA2Q08379 1002 aa9.08□□□□□ -0.96
ZNF540-202ENST00000343599 ANKRD18AQ8IVF6 992 aa9.08□□□□□ -0.96
ZNF540-202ENST00000343599 GJA8P48165 433 aa9.08□□□□□ -0.96
ZNF540-202ENST00000343599 ZNF804AQ7Z570 1209 aa9.08□□□□□ -0.96
ZNF540-202ENST00000343599 PROCA1Q8NCQ7 364 aaPredicted RBP9.08□□□□□ -0.96
ZNF540-202ENST00000343599 CLUAP1Q96AJ1 413 aa9.08□□□□□ -0.96
ZNF540-202ENST00000343599 ZDHHC15Q96MV8 337 aa9.08□□□□□ -0.96
ZNF540-202ENST00000343599 MAP7D2Q96T17 732 aa9.08□□□□□ -0.96
ZNF540-202ENST00000343599 MORF4L1Q9UBU8 362 aa9.08□□□□□ -0.96
ZNF540-202ENST00000343599 PTPRCP08575 1304 aa9.08□□□□□ -0.96
ZNF540-202ENST00000343599 COPB2P35606 906 aa9.08□□□□□ -0.96
ZNF540-202ENST00000343599 MFAP1P55081 439 aaKnown RBP9.08□□□□□ -0.96
ZNF540-202ENST00000343599 AOC3Q16853 763 aa9.08□□□□□ -0.96
ZNF540-202ENST00000343599 CYP4F22Q6NT55 531 aa9.08□□□□□ -0.96
ZNF540-202ENST00000343599 COPS6Q7L5N1 327 aa9.08□□□□□ -0.96
ZNF540-202ENST00000343599 TRPM4Q8TD43 1214 aa9.08□□□□□ -0.96
ZNF540-202ENST00000343599 RNF25Q96BH1 459 aaPredicted RBP9.08□□□□□ -0.96
ZNF540-202ENST00000343599 POLLQ9UGP5 575 aa9.08□□□□□ -0.96
ZNF540-202ENST00000343599 ZBTB7BO15156 539 aaPredicted RBP9.07□□□□□ -0.96
ZNF540-202ENST00000343599 GTPBP6O43824 516 aaPredicted RBP9.07□□□□□ -0.96
ZNF540-202ENST00000343599 GJB1P08034 283 aa9.07□□□□□ -0.96
ZNF540-202ENST00000343599 SCARF1Q14162 830 aa9.07□□□□□ -0.96
ZNF540-202ENST00000343599 ZGPATQ8N5A5 531 aaKnown RBP9.07□□□□□ -0.96
ZNF540-202ENST00000343599 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.07□□□□□ -0.96
ZNF540-202ENST00000343599 MS4A4AQ96JQ5 239 aa9.07□□□□□ -0.96
ZNF540-202ENST00000343599 GZF1Q9H116 711 aaPredicted RBP9.07□□□□□ -0.96
ZNF540-202ENST00000343599 MYO1BO43795 1136 aa9.07□□□□□ -0.96
ZNF540-202ENST00000343599 FRAT2O75474 233 aaPredicted RBP9.07□□□□□ -0.96
ZNF540-202ENST00000343599 FBLN1P23142 703 aa9.07□□□□□ -0.96
ZNF540-202ENST00000343599 ZNF157P51786 506 aaPredicted RBP9.07□□□□□ -0.96
ZNF540-202ENST00000343599 MKRN4PQ13434 485 aaPredicted RBP9.07□□□□□ -0.96
ZNF540-202ENST00000343599 MAP1SQ66K74 1059 aaPredicted RBP9.07□□□□□ -0.96
ZNF540-202ENST00000343599 MSL3Q8N5Y2 521 aaKnown RBP9.07□□□□□ -0.96
ZNF540-202ENST00000343599 LINS1Q8NG48 757 aa9.07□□□□□ -0.96
ZNF540-202ENST00000343599 CLEC11AQ9Y240 323 aa9.07□□□□□ -0.96
ZNF540-202ENST00000343599 RALGAPA2Q2PPJ7 1873 aa9.06□□□□□ -0.96
ZNF540-202ENST00000343599 PPP1R12BO60237 982 aaPredicted RBP9.06□□□□□ -0.96
ZNF540-202ENST00000343599 GCLCP48506 637 aaPredicted RBP9.06□□□□□ -0.96
ZNF540-202ENST00000343599 C17orf99Q6UX52 265 aa9.06□□□□□ -0.96
ZNF540-202ENST00000343599 OTOP1Q7RTM1 612 aa9.06□□□□□ -0.96
ZNF540-202ENST00000343599 ERO1BQ86YB8 467 aa9.06□□□□□ -0.96
ZNF540-202ENST00000343599 FAM177A1Q8N128 213 aaPredicted RBP9.06□□□□□ -0.96
ZNF540-202ENST00000343599 ZNF526Q8TF50 670 aaPredicted RBP9.06□□□□□ -0.96
ZNF540-202ENST00000343599 IDI2Q9BXS1 227 aa9.06□□□□□ -0.96
ZNF540-202ENST00000343599 OSBPL5Q9H0X9 879 aaPredicted RBP9.06□□□□□ -0.96
ZNF540-202ENST00000343599 CHRM1P11229 460 aaPredicted RBP9.06□□□□□ -0.96
ZNF540-202ENST00000343599 SLF2Q8IX21 1173 aa9.06□□□□□ -0.96
ZNF540-202ENST00000343599 BORCS6Q96GS4 357 aa9.06□□□□□ -0.96
ZNF540-202ENST00000343599 TRIM35Q9UPQ4 493 aa9.06□□□□□ -0.96
ZNF540-202ENST00000343599 NAV1Q8NEY1 1877 aa9.06□□□□□ -0.96
ZNF540-202ENST00000343599 POU3F3P20264 500 aaPredicted RBP9.06□□□□□ -0.96
ZNF540-202ENST00000343599 FXR1P51114 621 aaKnown RBP eCLIP9.06□□□□□ -0.96
ZNF540-202ENST00000343599 KIF22Q14807 665 aa9.06□□□□□ -0.96
ZNF540-202ENST00000343599 FASTKD5Q7L8L6 764 aaKnown RBP9.06□□□□□ -0.96
ZNF540-202ENST00000343599 SYMPKQ92797 1274 aaKnown RBP9.06□□□□□ -0.96
ZNF540-202ENST00000343599 TRIM47Q96LD4 638 aa9.06□□□□□ -0.96
ZNF540-202ENST00000343599 CWC22Q9HCG8 908 aaKnown RBP9.06□□□□□ -0.96
ZNF540-202ENST00000343599 GAKO14976 1311 aa9.05□□□□□ -0.96
ZNF540-202ENST00000343599 SPDYE2BA6NHP3 402 aa9.05□□□□□ -0.96
ZNF540-202ENST00000343599 POTEIP0CG38 1075 aa9.05□□□□□ -0.96
ZNF540-202ENST00000343599 POTEJP0CG39 1038 aa9.05□□□□□ -0.96
ZNF540-202ENST00000343599 SPDYE6P0CI01 402 aa9.05□□□□□ -0.96
ZNF540-202ENST00000343599 PAK6Q9NQU5 681 aaPredicted RBP9.05□□□□□ -0.96
ZNF540-202ENST00000343599 TSPYL4Q9UJ04 414 aa9.05□□□□□ -0.96
ZNF540-202ENST00000343599 TANC1Q9C0D5 1861 aa9.05□□□□□ -0.96
ZNF540-202ENST00000343599 IRS4O14654 1257 aaPredicted RBP9.05□□□□□ -0.96
ZNF540-202ENST00000343599 CCT4P50991 539 aaKnown RBP9.05□□□□□ -0.96
ZNF540-202ENST00000343599 PABPC4Q13310 644 aaKnown RBP eCLIP9.05□□□□□ -0.96
ZNF540-202ENST00000343599 SNX17Q15036 470 aa9.05□□□□□ -0.96
ZNF540-202ENST00000343599 FBXO33Q7Z6M2 555 aa9.05□□□□□ -0.96
ZNF540-202ENST00000343599 USP48Q86UV5 1035 aa9.05□□□□□ -0.96
ZNF540-202ENST00000343599 FTSJ3Q8IY81 847 aaKnown RBP9.05□□□□□ -0.96
ZNF540-202ENST00000343599 ZNF296Q8WUU4 475 aaPredicted RBP9.05□□□□□ -0.96
ZNF540-202ENST00000343599 U2SURPO15042 1029 aaKnown RBP9.04□□□□□ -0.96
ZNF540-202ENST00000343599 NUBP1P53384 320 aa9.04□□□□□ -0.96
ZNF540-202ENST00000343599 TTLL7Q6ZT98 887 aa9.04□□□□□ -0.96
ZNF540-202ENST00000343599 OGFOD1Q8N543 542 aa9.04□□□□□ -0.96
ZNF540-202ENST00000343599 C12orf42Q96LP6 360 aa9.04□□□□□ -0.96
ZNF540-202ENST00000343599 TMEM51Q9NW97 253 aa9.04□□□□□ -0.96
ZNF540-202ENST00000343599 TLR2O60603 784 aa9.04□□□□□ -0.96
ZNF540-202ENST00000343599 MSCO60682 206 aa9.04□□□□□ -0.96
ZNF540-202ENST00000343599 BCRP11274 1271 aa9.04□□□□□ -0.96
ZNF540-202ENST00000343599 MAP3K9P80192 1104 aa9.04□□□□□ -0.96
ZNF540-202ENST00000343599 SP3Q02447 781 aa9.04□□□□□ -0.96
ZNF540-202ENST00000343599 GLIS2Q9BZE0 524 aaPredicted RBP9.04□□□□□ -0.96
ZNF540-202ENST00000343599 NR2E3Q9Y5X4 410 aa9.04□□□□□ -0.96
ZNF540-202ENST00000343599 UBXN2AP68543 259 aa9.03□□□□□ -0.96
ZNF540-202ENST00000343599 EAPPQ56P03 285 aaPredicted RBP9.03□□□□□ -0.96
ZNF540-202ENST00000343599 TEX2Q8IWB9 1127 aa9.03□□□□□ -0.96
ZNF540-202ENST00000343599 TTLL11Q8NHH1 800 aa9.03□□□□□ -0.96
ZNF540-202ENST00000343599 SPOCK2Q92563 424 aa9.03□□□□□ -0.96
ZNF540-202ENST00000343599 TEPSINQ96N21 525 aa9.03□□□□□ -0.96
ZNF540-202ENST00000343599 GPR108Q9NPR9 543 aa9.03□□□□□ -0.96
ZNF540-202ENST00000343599 TRMT112Q9UI30 125 aaKnown RBP9.03□□□□□ -0.96
ZNF540-202ENST00000343599 MYH7P12883 1935 aa9.03□□□□□ -0.96
ZNF540-202ENST00000343599 SASH1O94885 1247 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 88.9 ms