RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 STAP2Q9UGK3 403 aa13.72□□□□□ -0.21
RTN3-203ENST00000341307 KIF3CO14782 793 aa13.72□□□□□ -0.21
RTN3-203ENST00000341307 TRIM37O94972 964 aa13.72□□□□□ -0.21
RTN3-203ENST00000341307 SNW1Q13573 536 aaKnown RBP13.72□□□□□ -0.21
RTN3-203ENST00000341307 NKX1-1Q15270 411 aaPredicted RBP13.72□□□□□ -0.21
RTN3-203ENST00000341307 TBC1D22AQ8WUA7 517 aa13.72□□□□□ -0.21
RTN3-203ENST00000341307 FUT8Q9BYC5 575 aa13.72□□□□□ -0.21
RTN3-203ENST00000341307 THSD7AQ9UPZ6 1657 aa13.72□□□□□ -0.21
RTN3-203ENST00000341307 CCDC69A6NI79 296 aa13.71□□□□□ -0.21
RTN3-203ENST00000341307 TADA3O75528 432 aa13.71□□□□□ -0.21
RTN3-203ENST00000341307 TTLL7Q6ZT98 887 aa13.71□□□□□ -0.21
RTN3-203ENST00000341307 EPC1Q9H2F5 836 aa13.71□□□□□ -0.21
RTN3-203ENST00000341307 TUBGCP6Q96RT7 1819 aa13.71□□□□□ -0.21
RTN3-203ENST00000341307 UTYO14607 1347 aa13.71□□□□□ -0.21
RTN3-203ENST00000341307 ERC2O15083 957 aa13.71□□□□□ -0.21
RTN3-203ENST00000341307 MAP3K11Q16584 847 aa13.71□□□□□ -0.21
RTN3-203ENST00000341307 KCNV1Q6PIU1 500 aa13.71□□□□□ -0.21
RTN3-203ENST00000341307 PI4K2BQ8TCG2 481 aa13.71□□□□□ -0.21
RTN3-203ENST00000341307 IL25Q9H293 177 aa13.71□□□□□ -0.21
RTN3-203ENST00000341307 PALD1Q9ULE6 856 aa13.71□□□□□ -0.21
RTN3-203ENST00000341307 KAT6BQ8WYB5 2073 aa13.71□□□□□ -0.22
RTN3-203ENST00000341307 C21orf2O43822 256 aa13.7□□□□□ -0.22
RTN3-203ENST00000341307 MNAT1P51948 309 aa13.7□□□□□ -0.22
RTN3-203ENST00000341307 CCDC158Q5M9N0 1113 aa13.7□□□□□ -0.22
RTN3-203ENST00000341307 UBE3BQ7Z3V4 1068 aa13.7□□□□□ -0.22
RTN3-203ENST00000341307 ZNF330Q9Y3S2 320 aaPredicted RBP13.7□□□□□ -0.22
RTN3-203ENST00000341307 KCPQ6ZWJ8 1503 aa13.7□□□□□ -0.22
RTN3-203ENST00000341307 TOGARAM1Q9Y4F4 1720 aa13.7□□□□□ -0.22
RTN3-203ENST00000341307 SMC2O95347 1197 aa13.7□□□□□ -0.22
RTN3-203ENST00000341307 CHMLP26374 656 aa13.7□□□□□ -0.22
RTN3-203ENST00000341307 CAMK4Q16566 473 aa13.7□□□□□ -0.22
RTN3-203ENST00000341307 NBPF9Q3BBW0 867 aa13.7□□□□□ -0.22
RTN3-203ENST00000341307 ASAP1Q9ULH1 1129 aa13.7□□□□□ -0.22
RTN3-203ENST00000341307 A0A087WUV0 522 aaPredicted RBP13.69□□□□□ -0.22
RTN3-203ENST00000341307 GORABQ5T7V8 394 aa13.69□□□□□ -0.22
RTN3-203ENST00000341307 E4F1Q66K89 784 aaPredicted RBP13.69□□□□□ -0.22
RTN3-203ENST00000341307 LRRC31Q6UY01 552 aa13.69□□□□□ -0.22
RTN3-203ENST00000341307 MICALL1Q8N3F8 863 aa13.69□□□□□ -0.22
RTN3-203ENST00000341307 ZBTB3Q9H5J0 574 aa13.69□□□□□ -0.22
RTN3-203ENST00000341307 TMOD3Q9NYL9 352 aa13.69□□□□□ -0.22
RTN3-203ENST00000341307 MKRN1Q9UHC7 482 aaKnown RBP13.69□□□□□ -0.22
RTN3-203ENST00000341307 SASH1O94885 1247 aa13.69□□□□□ -0.22
RTN3-203ENST00000341307 F13A1P00488 732 aa13.69□□□□□ -0.22
RTN3-203ENST00000341307 HNRNPH1P31943 449 aaKnown RBP13.69□□□□□ -0.22
RTN3-203ENST00000341307 ZRSR1Q15695 479 aaKnown RBP13.69□□□□□ -0.22
RTN3-203ENST00000341307 MIEF2Q96C03 454 aa13.69□□□□□ -0.22
RTN3-203ENST00000341307 PPP1R13BQ96KQ4 1090 aa13.69□□□□□ -0.22
RTN3-203ENST00000341307 ESYT1Q9BSJ8 1104 aa13.69□□□□□ -0.22
RTN3-203ENST00000341307 A0A087WZG4 1122 aa13.68□□□□□ -0.22
RTN3-203ENST00000341307 TPM1P09493 284 aa13.68□□□□□ -0.22
RTN3-203ENST00000341307 DEFB132Q7Z7B7 95 aa13.68□□□□□ -0.22
RTN3-203ENST00000341307 NBPF11Q86T75 865 aa13.68□□□□□ -0.22
RTN3-203ENST00000341307 CKAP2LQ8IYA6 745 aa13.68□□□□□ -0.22
RTN3-203ENST00000341307 PIGBQ92521 554 aa13.68□□□□□ -0.22
RTN3-203ENST00000341307 LAMB4A4D0S4 1761 aa13.68□□□□□ -0.22
RTN3-203ENST00000341307 ARFGEF2Q9Y6D5 1785 aa13.68□□□□□ -0.22
RTN3-203ENST00000341307 HSP90AB4PQ58FF6 505 aa13.68□□□□□ -0.22
RTN3-203ENST00000341307 TTC19Q6DKK2 380 aaPredicted RBP13.68□□□□□ -0.22
RTN3-203ENST00000341307 CLASRPQ8N2M8 674 aaKnown RBP13.68□□□□□ -0.22
RTN3-203ENST00000341307 PLBD2Q8NHP8 589 aa13.68□□□□□ -0.22
RTN3-203ENST00000341307 NUP62CLQ9H1M0 184 aa13.68□□□□□ -0.22
RTN3-203ENST00000341307 VPS18Q9P253 973 aa13.68□□□□□ -0.22
RTN3-203ENST00000341307 UBR2Q8IWV8 1755 aa13.68□□□□□ -0.22
RTN3-203ENST00000341307 SYT1P21579 422 aa13.67□□□□□ -0.22
RTN3-203ENST00000341307 DNM1Q05193 864 aaKnown RBP13.67□□□□□ -0.22
RTN3-203ENST00000341307 NAIF1Q69YI7 327 aaPredicted RBP13.67□□□□□ -0.22
RTN3-203ENST00000341307 AACSQ86V21 672 aa13.67□□□□□ -0.22
RTN3-203ENST00000341307 UPF1Q92900 1129 aaKnown RBP eCLIP13.67□□□□□ -0.221e-25■■■■□ 25.8
RTN3-203ENST00000341307 CDCA7Q9BWT1 371 aaPredicted RBP13.67□□□□□ -0.22
RTN3-203ENST00000341307 ANO2Q9NQ90 1003 aa13.67□□□□□ -0.22
RTN3-203ENST00000341307 TNS2Q63HR2 1409 aa13.67□□□□□ -0.22
RTN3-203ENST00000341307 AFDNP55196 1824 aaKnown RBP13.67□□□□□ -0.22
RTN3-203ENST00000341307 EFCAB8A8MWE9 144 aa13.67□□□□□ -0.22
RTN3-203ENST00000341307 STX6O43752 255 aa13.67□□□□□ -0.22
RTN3-203ENST00000341307 LIG1P18858 919 aa13.67□□□□□ -0.22
RTN3-203ENST00000341307 MRFAP1L1Q96HT8 127 aa13.67□□□□□ -0.22
RTN3-203ENST00000341307 CCDC8Q9H0W5 538 aaPredicted RBP13.67□□□□□ -0.22
RTN3-203ENST00000341307 PLEKHA4Q9H4M7 779 aa13.67□□□□□ -0.22
RTN3-203ENST00000341307 TLR7Q9NYK1 1049 aaKnown RBP13.67□□□□□ -0.22
RTN3-203ENST00000341307 ZKSCAN8Q15776 578 aaPredicted RBP13.66□□□□□ -0.22
RTN3-203ENST00000341307 CPLX2Q6PUV4 134 aaKnown RBP13.66□□□□□ -0.22
RTN3-203ENST00000341307 SARM1Q6SZW1 724 aa13.66□□□□□ -0.22
RTN3-203ENST00000341307 EAF2Q96CJ1 260 aaPredicted RBP13.66□□□□□ -0.22
RTN3-203ENST00000341307 BSDC1Q9NW68 430 aaPredicted RBP13.66□□□□□ -0.22
RTN3-203ENST00000341307 AKAP2Q9Y2D5 859 aa13.66□□□□□ -0.22
RTN3-203ENST00000341307 PAPPAQ13219 1627 aa13.66□□□□□ -0.22
RTN3-203ENST00000341307 MAP2K7O14733 419 aa13.66□□□□□ -0.22
RTN3-203ENST00000341307 CALRP27797 417 aaKnown RBP13.66□□□□□ -0.22
RTN3-203ENST00000341307 ZNF165P49910 485 aa13.66□□□□□ -0.22
RTN3-203ENST00000341307 KCNQ4P56696 695 aa13.66□□□□□ -0.22
RTN3-203ENST00000341307 G3BP1Q13283 466 aaKnown RBP eCLIP13.66□□□□□ -0.22
RTN3-203ENST00000341307 DNAJC10Q8IXB1 793 aa13.66□□□□□ -0.22
RTN3-203ENST00000341307 ARFGAP3Q9NP61 516 aa13.66□□□□□ -0.22
RTN3-203ENST00000341307 FANCGO15287 622 aa13.65□□□□□ -0.22
RTN3-203ENST00000341307 SGSM2O43147 1006 aa13.65□□□□□ -0.22
RTN3-203ENST00000341307 IFIT2P09913 472 aaKnown RBP13.65□□□□□ -0.22
RTN3-203ENST00000341307 EVCP57679 992 aa13.65□□□□□ -0.22
RTN3-203ENST00000341307 CARD6Q9BX69 1037 aa13.65□□□□□ -0.22
RTN3-203ENST00000341307 UPF3BQ9BZI7 483 aaKnown RBP13.65□□□□□ -0.22
RTN3-203ENST00000341307 DNAJC25Q9H1X3 360 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms