RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 GPRC5DQ9NZD1 345 aa26.88■■□□□ 1.89
SDC3-202ENST00000339394 SHTN1A0MZ66 631 aa26.88■■□□□ 1.89
SDC3-202ENST00000339394 MICALL2Q8IY33 904 aa26.88■■□□□ 1.89
SDC3-202ENST00000339394 CNTROBQ8N137 903 aa26.88■■□□□ 1.89
SDC3-202ENST00000339394 ZNF384Q8TF68 577 aa26.88■■□□□ 1.89
SDC3-202ENST00000339394 ZNF646O15015 1829 aaPredicted RBP26.88■■□□□ 1.89
SDC3-202ENST00000339394 PSME4Q14997 1843 aa26.88■■□□□ 1.89
SDC3-202ENST00000339394 HDAC9Q9UKV0 1011 aa26.87■■□□□ 1.89
SDC3-202ENST00000339394 MYH13Q9UKX3 1938 aa26.86■■□□□ 1.89
SDC3-202ENST00000339394 IGSF3O75054 1194 aa26.86■■□□□ 1.89
SDC3-202ENST00000339394 SDSP20132 328 aa26.86■■□□□ 1.89
SDC3-202ENST00000339394 ZNF280AP59817 542 aaPredicted RBP26.86■■□□□ 1.89
SDC3-202ENST00000339394 DIXDC1Q155Q3 683 aa26.86■■□□□ 1.89
SDC3-202ENST00000339394 SLC9C2Q5TAH2 1124 aa26.86■■□□□ 1.89
SDC3-202ENST00000339394 MAST3O60307 1309 aa26.86■■□□□ 1.89
SDC3-202ENST00000339394 EPS15P42566 896 aa26.85■■□□□ 1.89
SDC3-202ENST00000339394 FSD1Q9BTV5 496 aa26.85■■□□□ 1.89
SDC3-202ENST00000339394 MRIQ9BWK5 157 aa26.85■■□□□ 1.89
SDC3-202ENST00000339394 DDX24Q9GZR7 859 aaKnown RBP eCLIP26.85■■□□□ 1.89
SDC3-202ENST00000339394 LMOD1P29536 600 aaPredicted RBP26.84■■□□□ 1.89
SDC3-202ENST00000339394 MMP14P50281 582 aa26.84■■□□□ 1.89
SDC3-202ENST00000339394 BMP2KLQ5H9B9 411 aa26.84■■□□□ 1.89
SDC3-202ENST00000339394 MAGEB6Q8N7X4 407 aa26.84■■□□□ 1.89
SDC3-202ENST00000339394 SERPINA10Q9UK55 444 aa26.84■■□□□ 1.89
SDC3-202ENST00000339394 H7C1D1 291 aa26.84■■□□□ 1.89
SDC3-202ENST00000339394 CHGBP05060 677 aa26.84■■□□□ 1.89
SDC3-202ENST00000339394 HDLBPQ00341 1268 aaKnown RBP26.84■■□□□ 1.89
SDC3-202ENST00000339394 NAA16Q6N069 864 aaPredicted RBP26.84■■□□□ 1.89
SDC3-202ENST00000339394 POTECB2RU33 542 aa26.83■■□□□ 1.89
SDC3-202ENST00000339394 PDE6AP16499 860 aa26.83■■□□□ 1.89
SDC3-202ENST00000339394 CRKP46108 304 aa26.83■■□□□ 1.89
SDC3-202ENST00000339394 TEKT1Q969V4 418 aa26.83■■□□□ 1.89
SDC3-202ENST00000339394 MYOZ2Q9NPC6 264 aa26.83■■□□□ 1.89
SDC3-202ENST00000339394 ADD2P35612 726 aa26.82■■□□□ 1.88
SDC3-202ENST00000339394 GSTO1P78417 241 aa26.82■■□□□ 1.88
SDC3-202ENST00000339394 HHIPL2Q6UWX4 724 aa26.82■■□□□ 1.88
SDC3-202ENST00000339394 SAMD7Q7Z3H4 446 aa26.82■■□□□ 1.88
SDC3-202ENST00000339394 ZNF526Q8TF50 670 aaPredicted RBP26.82■■□□□ 1.88
SDC3-202ENST00000339394 FAM163AQ96GL9 167 aaPredicted RBP26.82■■□□□ 1.88
SDC3-202ENST00000339394 HACL1Q9UJ83 578 aa26.82■■□□□ 1.88
SDC3-202ENST00000339394 EGFRP00533 1210 aa26.81■■□□□ 1.88
SDC3-202ENST00000339394 RBM5P52756 815 aaKnown RBP eCLIP26.81■■□□□ 1.88
SDC3-202ENST00000339394 CFAP100Q494V2 611 aa26.81■■□□□ 1.88
SDC3-202ENST00000339394 SLFNL1Q499Z3 407 aa26.81■■□□□ 1.88
SDC3-202ENST00000339394 ZSCAN25Q6NSZ9 544 aa26.81■■□□□ 1.88
SDC3-202ENST00000339394 SLF2Q8IX21 1173 aa26.81■■□□□ 1.88
SDC3-202ENST00000339394 PCDHAC2Q9Y5I4 1007 aa26.81■■□□□ 1.88
SDC3-202ENST00000339394 ZNF532Q9HCE3 1301 aa26.8■■□□□ 1.88
SDC3-202ENST00000339394 TCRBV5S4A2TA0A5A2 114 aa26.8■■□□□ 1.88
SDC3-202ENST00000339394 IQCA1LA6NCM1 817 aa26.8■■□□□ 1.88
SDC3-202ENST00000339394 LRRFIP1Q32MZ4 808 aaKnown RBP26.8■■□□□ 1.88
SDC3-202ENST00000339394 RBM26Q5T8P6 1007 aaKnown RBP26.8■■□□□ 1.88
SDC3-202ENST00000339394 TMED8Q6PL24 325 aaPredicted RBP26.8■■□□□ 1.88
SDC3-202ENST00000339394 ADGRA1Q86SQ6 560 aa26.8■■□□□ 1.88
SDC3-202ENST00000339394 RNF113AO15541 343 aaKnown RBP26.8■■□□□ 1.88
SDC3-202ENST00000339394 LDHCP07864 332 aa26.8■■□□□ 1.88
SDC3-202ENST00000339394 CYP7A1P22680 504 aa26.8■■□□□ 1.88
SDC3-202ENST00000339394 UBE3CQ15386 1083 aa26.8■■□□□ 1.88
SDC3-202ENST00000339394 TBC1D10BQ4KMP7 808 aaPredicted RBP26.8■■□□□ 1.88
SDC3-202ENST00000339394 ZDHHC15Q96MV8 337 aa26.8■■□□□ 1.88
SDC3-202ENST00000339394 RRAGCQ9HB90 399 aa26.8■■□□□ 1.88
SDC3-202ENST00000339394 ADARB2Q9NS39 739 aaKnown RBP26.8■■□□□ 1.88
SDC3-202ENST00000339394 DAGLAQ9Y4D2 1042 aa26.8■■□□□ 1.88
SDC3-202ENST00000339394 MROH7-TTC4A0A0A0MT08 1334 aa26.79■■□□□ 1.88
SDC3-202ENST00000339394 GAKO14976 1311 aa26.79■■□□□ 1.88
SDC3-202ENST00000339394 ZFYP08048 801 aaPredicted RBP26.79■■□□□ 1.88
SDC3-202ENST00000339394 TICAM2Q86XR7 235 aa26.79■■□□□ 1.88
SDC3-202ENST00000339394 MTMR14Q8NCE2 650 aa26.79■■□□□ 1.88
SDC3-202ENST00000339394 EPHX2P34913 555 aa26.78■■□□□ 1.88
SDC3-202ENST00000339394 DLGAP5Q15398 846 aa26.78■■□□□ 1.88
SDC3-202ENST00000339394 APOBEC3HQ6NTF7 200 aaKnown RBP26.78■■□□□ 1.88
SDC3-202ENST00000339394 PRMT6Q96LA8 375 aaPredicted RBP26.78■■□□□ 1.88
SDC3-202ENST00000339394 SPDYE2BA6NHP3 402 aa26.77■■□□□ 1.88
SDC3-202ENST00000339394 SPDYE6P0CI01 402 aa26.77■■□□□ 1.88
SDC3-202ENST00000339394 KIF4BQ2VIQ3 1234 aa26.77■■□□□ 1.88
SDC3-202ENST00000339394 TRPM4Q8TD43 1214 aa26.77■■□□□ 1.88
SDC3-202ENST00000339394 TAF1DQ9H5J8 278 aaPredicted RBP26.77■■□□□ 1.88
SDC3-202ENST00000339394 GPR75-ASB3A0A0A6YYF3 556 aa26.76■■□□□ 1.87
SDC3-202ENST00000339394 WNT10BO00744 389 aa26.76■■□□□ 1.87
SDC3-202ENST00000339394 VEGFAP15692 232 aaPredicted RBP26.76■■□□□ 1.87
SDC3-202ENST00000339394 YY1P25490 414 aa26.76■■□□□ 1.87
SDC3-202ENST00000339394 ZBED3Q96IU2 234 aaPredicted RBP26.76■■□□□ 1.87
SDC3-202ENST00000339394 NMRK2Q9NPI5 230 aa26.76■■□□□ 1.87
SDC3-202ENST00000339394 WDR90Q96KV7 1748 aa26.76■■□□□ 1.87
SDC3-202ENST00000339394 HIRAP54198 1017 aaPredicted RBP26.75■■□□□ 1.87
SDC3-202ENST00000339394 NBPF9Q3BBW0 867 aa26.75■■□□□ 1.87
SDC3-202ENST00000339394 MIGA1Q8NAN2 632 aa26.75■■□□□ 1.87
SDC3-202ENST00000339394 RFX7Q2KHR2 1363 aa26.75■■□□□ 1.87
SDC3-202ENST00000339394 BTDP43251 543 aa26.75■■□□□ 1.87
SDC3-202ENST00000339394 PUS7LQ9H0K6 701 aaKnown RBP26.75■■□□□ 1.87
SDC3-202ENST00000339394 AATFQ9NY61 560 aaKnown RBP eCLIP26.75■■□□□ 1.872e-7■■■■■ 38.3
SDC3-202ENST00000339394 DOCK2Q92608 1830 aa26.75■■□□□ 1.87
SDC3-202ENST00000339394 USP50Q70EL3 339 aaPredicted RBP26.74■■□□□ 1.87
SDC3-202ENST00000339394 APPBP2Q92624 585 aa26.74■■□□□ 1.87
SDC3-202ENST00000339394 OSBP2Q969R2 916 aa26.74■■□□□ 1.87
SDC3-202ENST00000339394 MYO5AQ9Y4I1 1855 aaKnown RBP26.74■■□□□ 1.87
SDC3-202ENST00000339394 ZMYM1Q5SVZ6 1142 aa26.73■■□□□ 1.87
SDC3-202ENST00000339394 HIP1O00291 1037 aa26.72■■□□□ 1.87
SDC3-202ENST00000339394 BAG3O95817 575 aa26.72■■□□□ 1.87
SDC3-202ENST00000339394 PPP4CP60510 307 aa26.72■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms