RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 CREBZFQ9NS37 354 aa12.75□□□□□ -0.37
RTN3-201ENST00000338850 ADAMTSL1Q8N6G6 1762 aa12.74□□□□□ -0.37
RTN3-201ENST00000338850 GADD45BO75293 160 aaPredicted RBP12.74□□□□□ -0.37
RTN3-201ENST00000338850 BBOX1O75936 387 aa12.74□□□□□ -0.37
RTN3-201ENST00000338850 CAVIN2O95810 425 aa12.74□□□□□ -0.37
RTN3-201ENST00000338850 MAP4K4O95819 1239 aaPredicted RBP12.74□□□□□ -0.37
RTN3-201ENST00000338850 ITGBL1O95965 494 aaPredicted RBP12.74□□□□□ -0.37
RTN3-201ENST00000338850 ME3Q16798 604 aa12.74□□□□□ -0.37
RTN3-201ENST00000338850 ADCK5Q3MIX3 580 aa12.74□□□□□ -0.37
RTN3-201ENST00000338850 RBM43Q6ZSC3 357 aaKnown RBP12.74□□□□□ -0.37
RTN3-201ENST00000338850 ANKRD13DQ6ZTN6 518 aa12.74□□□□□ -0.37
RTN3-201ENST00000338850 MTERF4Q7Z6M4 381 aaKnown RBP12.74□□□□□ -0.37
RTN3-201ENST00000338850 PNMA8AQ86V59 439 aaPredicted RBP12.74□□□□□ -0.37
RTN3-201ENST00000338850 LLPHQ9BRT6 129 aaKnown RBP12.74□□□□□ -0.37
RTN3-201ENST00000338850 ISCA1Q9BUE6 129 aa12.74□□□□□ -0.37
RTN3-201ENST00000338850 SCAND2PQ9GZW5 306 aaPredicted RBP12.74□□□□□ -0.37
RTN3-201ENST00000338850 FBXO3Q9UK99 471 aa12.74□□□□□ -0.37
RTN3-201ENST00000338850 PA2G4Q9UQ80 394 aaKnown RBP12.74□□□□□ -0.37
RTN3-201ENST00000338850 CNPY2Q9Y2B0 182 aa12.74□□□□□ -0.37
RTN3-201ENST00000338850 GJA3Q9Y6H8 435 aa12.74□□□□□ -0.37
RTN3-201ENST00000338850 U3KPZ7 1027 aaPredicted RBP12.74□□□□□ -0.37
RTN3-201ENST00000338850 PPIP5K2O43314 1243 aa12.73□□□□□ -0.37
RTN3-201ENST00000338850 LARGE1O95461 756 aa12.73□□□□□ -0.37
RTN3-201ENST00000338850 HMGB1P09429 215 aaKnown RBP12.73□□□□□ -0.37
RTN3-201ENST00000338850 CASP7P55210 303 aa12.73□□□□□ -0.37
RTN3-201ENST00000338850 AOC3Q16853 763 aa12.73□□□□□ -0.37
RTN3-201ENST00000338850 TNNI3KQ59H18 835 aa12.73□□□□□ -0.37
RTN3-201ENST00000338850 ATL3Q6DD88 541 aa12.73□□□□□ -0.37
RTN3-201ENST00000338850 NOL8Q76FK4 1167 aaKnown RBP12.73□□□□□ -0.37
RTN3-201ENST00000338850 CCDC83Q8IWF9 413 aa12.73□□□□□ -0.37
RTN3-201ENST00000338850 SP8Q8IXZ3 490 aa12.73□□□□□ -0.37
RTN3-201ENST00000338850 NIM1KQ8IY84 436 aa12.73□□□□□ -0.37
RTN3-201ENST00000338850 FBXL16Q8N461 479 aa12.73□□□□□ -0.37
RTN3-201ENST00000338850 FSD1Q9BTV5 496 aa12.73□□□□□ -0.37
RTN3-201ENST00000338850 RTFDC1Q9BY42 306 aaPredicted RBP12.73□□□□□ -0.37
RTN3-201ENST00000338850 TMX4Q9H1E5 349 aaPredicted RBP12.73□□□□□ -0.37
RTN3-201ENST00000338850 VPS33BQ9H267 617 aa12.73□□□□□ -0.37
RTN3-201ENST00000338850 FPGT-TNNI3KV9GXZ4 949 aa12.73□□□□□ -0.37
RTN3-201ENST00000338850 LAMB2P55268 1798 aa12.73□□□□□ -0.37
RTN3-201ENST00000338850 A0A0D9SFI3 127 aa12.72□□□□□ -0.37
RTN3-201ENST00000338850 ATP5J2-PTCD1G3V325 749 aa12.72□□□□□ -0.37
RTN3-201ENST00000338850 TAF5LO75529 589 aa12.72□□□□□ -0.37
RTN3-201ENST00000338850 SCNN1DP51172 638 aa12.72□□□□□ -0.37
RTN3-201ENST00000338850 PTPN12Q05209 780 aaKnown RBP12.72□□□□□ -0.37
RTN3-201ENST00000338850 KIAA2012Q0VF49 1180 aa12.72□□□□□ -0.37
RTN3-201ENST00000338850 GRAPQ13588 217 aa12.72□□□□□ -0.37
RTN3-201ENST00000338850 DDX46Q7L014 1031 aaKnown RBP12.72□□□□□ -0.37
RTN3-201ENST00000338850 SUPT20HQ8NEM7 779 aa12.72□□□□□ -0.37
RTN3-201ENST00000338850 GRAPLQ8TC17 118 aaPredicted RBP12.72□□□□□ -0.37
RTN3-201ENST00000338850 UBE2Q2Q8WVN8 375 aa12.72□□□□□ -0.37
RTN3-201ENST00000338850 HAUS7Q99871 368 aa12.72□□□□□ -0.37
RTN3-201ENST00000338850 DDX19AQ9NUU7 478 aaKnown RBP12.72□□□□□ -0.37
RTN3-201ENST00000338850 MKRN1Q9UHC7 482 aaKnown RBP12.72□□□□□ -0.37
RTN3-201ENST00000338850 TPCN1Q9ULQ1 816 aa12.72□□□□□ -0.37
RTN3-201ENST00000338850 CLEC11AQ9Y240 323 aa12.72□□□□□ -0.37
RTN3-201ENST00000338850 ZNF609O15014 1411 aa12.71□□□□□ -0.37
RTN3-201ENST00000338850 LTBP1Q14766 1721 aa12.71□□□□□ -0.37
RTN3-201ENST00000338850 HSPA1AP0DMV8 641 aaKnown RBP12.71□□□□□ -0.37
RTN3-201ENST00000338850 HSPA1BP0DMV9 641 aaKnown RBP12.71□□□□□ -0.37
RTN3-201ENST00000338850 CCDC192P0DO97 292 aa12.71□□□□□ -0.37
RTN3-201ENST00000338850 EPS15P42566 896 aa12.71□□□□□ -0.37
RTN3-201ENST00000338850 TRIM28Q13263 835 aaKnown RBP12.71□□□□□ -0.37
RTN3-201ENST00000338850 MAP1SQ66K74 1059 aaPredicted RBP12.71□□□□□ -0.37
RTN3-201ENST00000338850 DPP8Q6V1X1 898 aaPredicted RBP12.71□□□□□ -0.37
RTN3-201ENST00000338850 MPNDQ8N594 471 aa12.71□□□□□ -0.37
RTN3-201ENST00000338850 PIBF1Q8WXW3 757 aa12.71□□□□□ -0.37
RTN3-201ENST00000338850 FAM89AQ96GI7 184 aa12.71□□□□□ -0.37
RTN3-201ENST00000338850 FAM227BQ96M60 508 aa12.71□□□□□ -0.37
RTN3-201ENST00000338850 AGXT2Q9BYV1 514 aa12.71□□□□□ -0.37
RTN3-201ENST00000338850 HELLSQ9NRZ9 838 aa12.71□□□□□ -0.37
RTN3-201ENST00000338850 CNTNAP1P78357 1384 aa12.7□□□□□ -0.38
RTN3-201ENST00000338850 TMEM88BA6NKF7 163 aa12.7□□□□□ -0.38
RTN3-201ENST00000338850 DYNC1I1O14576 645 aa12.7□□□□□ -0.38
RTN3-201ENST00000338850 KDM4AO75164 1064 aa12.7□□□□□ -0.38
RTN3-201ENST00000338850 CIAO1O76071 339 aa12.7□□□□□ -0.38
RTN3-201ENST00000338850 LMOD1P29536 600 aaPredicted RBP12.7□□□□□ -0.38
RTN3-201ENST00000338850 KCNJ4P48050 445 aa12.7□□□□□ -0.38
RTN3-201ENST00000338850 TOB2Q14106 344 aaPredicted RBP12.7□□□□□ -0.38
RTN3-201ENST00000338850 SF3B3Q15393 1217 aaKnown RBP12.7□□□□□ -0.38
RTN3-201ENST00000338850 COL13A1Q5TAT6 717 aaPredicted RBP12.7□□□□□ -0.38
RTN3-201ENST00000338850 FOXD4L5Q5VV16 416 aaPredicted RBP12.7□□□□□ -0.38
RTN3-201ENST00000338850 SASS6Q6UVJ0 657 aa12.7□□□□□ -0.38
RTN3-201ENST00000338850 TMC4Q7Z404 712 aa12.7□□□□□ -0.38
RTN3-201ENST00000338850 FOXD4L4Q8WXT5 416 aaPredicted RBP12.7□□□□□ -0.38
RTN3-201ENST00000338850 GTF3C6Q969F1 213 aa12.7□□□□□ -0.38
RTN3-201ENST00000338850 CHAMP1Q96JM3 812 aa12.7□□□□□ -0.38
RTN3-201ENST00000338850 PRIMPOLQ96LW4 560 aa12.7□□□□□ -0.38
RTN3-201ENST00000338850 DSCC1Q9BVC3 393 aa12.7□□□□□ -0.38
RTN3-201ENST00000338850 ZSCAN16Q9H4T2 348 aaPredicted RBP12.7□□□□□ -0.38
RTN3-201ENST00000338850 SPTLC3Q9NUV7 552 aa12.7□□□□□ -0.38
RTN3-201ENST00000338850 DBNLQ9UJU6 430 aaKnown RBP12.7□□□□□ -0.38
RTN3-201ENST00000338850 ZNRF3Q9ULT6 936 aa12.7□□□□□ -0.38
RTN3-201ENST00000338850 KIF3AQ9Y496 699 aa12.7□□□□□ -0.38
RTN3-201ENST00000338850 ARAP2Q8WZ64 1704 aa12.69□□□□□ -0.38
RTN3-201ENST00000338850 MYH3P11055 1940 aa12.69□□□□□ -0.38
RTN3-201ENST00000338850 H7C1W4 665 aa12.69□□□□□ -0.38
RTN3-201ENST00000338850 FIBPO43427 364 aa12.69□□□□□ -0.38
RTN3-201ENST00000338850 CXCL9Q07325 125 aa12.69□□□□□ -0.38
RTN3-201ENST00000338850 GLIPR1L2Q4G1C9 344 aa12.69□□□□□ -0.38
RTN3-201ENST00000338850 LARP1BQ659C4 914 aaKnown RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms