RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 PUM3Q15397 648 aaKnown RBP11.56□□□□□ -0.56
CHD3-201ENST00000330494 CCDC186Q7Z3E2 898 aa11.56□□□□□ -0.56
CHD3-201ENST00000330494 PLCD3Q8N3E9 789 aa11.56□□□□□ -0.56
CHD3-201ENST00000330494 GTF2F1P35269 517 aaKnown RBP eCLIP11.56□□□□□ -0.56
CHD3-201ENST00000330494 EYA2O00167 538 aa11.56□□□□□ -0.56
CHD3-201ENST00000330494 PDE8AO60658 829 aa11.56□□□□□ -0.56
CHD3-201ENST00000330494 PARP1P09874 1014 aaKnown RBP11.56□□□□□ -0.56
CHD3-201ENST00000330494 FCHSD1Q86WN1 690 aa11.56□□□□□ -0.56
CHD3-201ENST00000330494 FAM173BQ6P4H8 233 aa11.56□□□□□ -0.56
CHD3-201ENST00000330494 USP21Q9UK80 565 aa11.56□□□□□ -0.56
CHD3-201ENST00000330494 OTUD7BQ6GQQ9 843 aa11.56□□□□□ -0.56
CHD3-201ENST00000330494 TBC1D5Q92609 795 aa11.56□□□□□ -0.56
CHD3-201ENST00000330494 TTC12Q9H892 705 aaPredicted RBP11.56□□□□□ -0.56
CHD3-201ENST00000330494 KIF2AO00139 706 aaPredicted RBP11.55□□□□□ -0.56
CHD3-201ENST00000330494 MAP9Q49MG5 647 aa11.55□□□□□ -0.56
CHD3-201ENST00000330494 ZNF354CQ86Y25 554 aa11.55□□□□□ -0.56
CHD3-201ENST00000330494 FNBP4Q8N3X1 1017 aaPredicted RBP11.55□□□□□ -0.56
CHD3-201ENST00000330494 ZNF496Q96IT1 587 aaPredicted RBP11.55□□□□□ -0.56
CHD3-201ENST00000330494 SPAG5Q96R06 1193 aa11.55□□□□□ -0.56
CHD3-201ENST00000330494 PYM1Q9BRP8 204 aaKnown RBP11.55□□□□□ -0.56
CHD3-201ENST00000330494 DENND2AQ9ULE3 1009 aa11.55□□□□□ -0.56
CHD3-201ENST00000330494 MAPK8IP1Q9UQF2 711 aa11.55□□□□□ -0.56
CHD3-201ENST00000330494 GPAA1O43292 621 aa11.55□□□□□ -0.56
CHD3-201ENST00000330494 FAM13AO94988 1023 aa11.55□□□□□ -0.56
CHD3-201ENST00000330494 MPHOSPH6Q99547 160 aaKnown RBP11.55□□□□□ -0.56
CHD3-201ENST00000330494 TYRO3Q06418 890 aa11.55□□□□□ -0.56
CHD3-201ENST00000330494 DTHD1Q6ZMT9 781 aa11.55□□□□□ -0.56
CHD3-201ENST00000330494 MAEAQ7L5Y9 396 aa11.55□□□□□ -0.56
CHD3-201ENST00000330494 GPIHBP1Q8IV16 184 aa11.55□□□□□ -0.56
CHD3-201ENST00000330494 ZMYM4Q5VZL5 1548 aa11.55□□□□□ -0.56
CHD3-201ENST00000330494 ARHGEF12Q9NZN5 1544 aa11.55□□□□□ -0.56
CHD3-201ENST00000330494 HOOK3Q86VS8 718 aa11.55□□□□□ -0.56
CHD3-201ENST00000330494 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.55□□□□□ -0.56
CHD3-201ENST00000330494 V9GYY5 206 aaPredicted RBP11.55□□□□□ -0.56
CHD3-201ENST00000330494 ERCC3P19447 782 aa11.55□□□□□ -0.56
CHD3-201ENST00000330494 RPS6KB1P23443 525 aa11.55□□□□□ -0.56
CHD3-201ENST00000330494 PHKBQ93100 1093 aa11.55□□□□□ -0.56
CHD3-201ENST00000330494 SLAIN2Q9P270 581 aa11.55□□□□□ -0.56
CHD3-201ENST00000330494 SH3TC1Q8TE82 1336 aa11.55□□□□□ -0.56
CHD3-201ENST00000330494 GOLGA6L10A0A0M3HER8 536 aa11.55□□□□□ -0.56
CHD3-201ENST00000330494 EZRP15311 586 aaKnown RBP11.55□□□□□ -0.56
CHD3-201ENST00000330494 ZAP70P43403 619 aa11.55□□□□□ -0.56
CHD3-201ENST00000330494 KARSQ15046 597 aaKnown RBP11.55□□□□□ -0.56
CHD3-201ENST00000330494 NBPF14Q5TI25 921 aa11.55□□□□□ -0.56
CHD3-201ENST00000330494 MAATS1Q7Z4T9 603 aa11.55□□□□□ -0.56
CHD3-201ENST00000330494 SMC5Q8IY18 1101 aa11.55□□□□□ -0.56
CHD3-201ENST00000330494 GGA1Q9UJY5 639 aa11.54□□□□□ -0.56
CHD3-201ENST00000330494 CCNT1O60563 726 aaKnown RBP11.54□□□□□ -0.56
CHD3-201ENST00000330494 KRT13P13646 458 aa11.54□□□□□ -0.56
CHD3-201ENST00000330494 SYT1P21579 422 aa11.54□□□□□ -0.56
CHD3-201ENST00000330494 GTF2A1P52655 376 aaPredicted RBP11.54□□□□□ -0.56
CHD3-201ENST00000330494 LRRC27Q9C0I9 530 aa11.54□□□□□ -0.56
CHD3-201ENST00000330494 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.54□□□□□ -0.56
CHD3-201ENST00000330494 DDX39AO00148 427 aaKnown RBP11.54□□□□□ -0.56
CHD3-201ENST00000330494 HARSP12081 509 aaKnown RBP11.54□□□□□ -0.56
CHD3-201ENST00000330494 SKILP12757 684 aa11.54□□□□□ -0.56
CHD3-201ENST00000330494 PLCG2P16885 1265 aa11.54□□□□□ -0.56
CHD3-201ENST00000330494 UBXN1Q04323 297 aa11.54□□□□□ -0.56
CHD3-201ENST00000330494 USH1GQ495M9 461 aa11.54□□□□□ -0.56
CHD3-201ENST00000330494 GBP3Q9H0R5 595 aa11.54□□□□□ -0.56
CHD3-201ENST00000330494 LMAN1P49257 510 aa11.54□□□□□ -0.56
CHD3-201ENST00000330494 EYA3Q99504 573 aa11.54□□□□□ -0.56
CHD3-201ENST00000330494 HELLSQ9NRZ9 838 aa11.54□□□□□ -0.56
CHD3-201ENST00000330494 PSMA7O14818 248 aa11.54□□□□□ -0.56
CHD3-201ENST00000330494 CCT6AP40227 531 aaKnown RBP11.54□□□□□ -0.56
CHD3-201ENST00000330494 IRX3P78415 501 aaPredicted RBP11.54□□□□□ -0.56
CHD3-201ENST00000330494 SNX21Q969T3 373 aa11.54□□□□□ -0.56
CHD3-201ENST00000330494 CCDC87Q9NVE4 849 aa11.54□□□□□ -0.56
CHD3-201ENST00000330494 KRT79Q5XKE5 535 aa11.54□□□□□ -0.56
CHD3-201ENST00000330494 PIK3AP1Q6ZUJ8 805 aa11.54□□□□□ -0.56
CHD3-201ENST00000330494 CAPZA3Q96KX2 299 aa11.54□□□□□ -0.56
CHD3-201ENST00000330494 SNX14Q9Y5W7 946 aa11.54□□□□□ -0.56
CHD3-201ENST00000330494 APBA3O96018 575 aa11.53□□□□□ -0.56
CHD3-201ENST00000330494 DCAF17Q5H9S7 520 aaPredicted RBP11.53□□□□□ -0.56
CHD3-201ENST00000330494 DNAI1Q9UI46 699 aa11.53□□□□□ -0.56
CHD3-201ENST00000330494 CHL1O00533 1208 aa11.53□□□□□ -0.56
CHD3-201ENST00000330494 BACH1O14867 736 aa11.53□□□□□ -0.56
CHD3-201ENST00000330494 CALML3P27482 149 aa11.53□□□□□ -0.56
CHD3-201ENST00000330494 FAM182BQ5T319 152 aa11.53□□□□□ -0.56
CHD3-201ENST00000330494 IFNKQ9P0W0 207 aa11.53□□□□□ -0.56
CHD3-201ENST00000330494 CMTR1Q8N1G2 835 aaKnown RBP11.53□□□□□ -0.56
CHD3-201ENST00000330494 CTNND2Q9UQB3 1225 aa11.53□□□□□ -0.56
CHD3-201ENST00000330494 TTLL7Q6ZT98 887 aa11.53□□□□□ -0.56
CHD3-201ENST00000330494 TGFBRAP1Q8WUH2 860 aa11.53□□□□□ -0.56
CHD3-201ENST00000330494 FAM47AQ5JRC9 791 aa11.52□□□□□ -0.56
CHD3-201ENST00000330494 MAPKAPK5Q8IW41 473 aa11.52□□□□□ -0.56
CHD3-201ENST00000330494 COMMD10Q9Y6G5 202 aa11.52□□□□□ -0.56
CHD3-201ENST00000330494 V9GY48 417 aaPredicted RBP11.52□□□□□ -0.56
CHD3-201ENST00000330494 KIF1BO60333 1816 aa11.52□□□□□ -0.56
CHD3-201ENST00000330494 GCKRQ14397 625 aa11.52□□□□□ -0.56
CHD3-201ENST00000330494 RNF187Q5TA31 235 aaPredicted RBP11.52□□□□□ -0.56
CHD3-201ENST00000330494 CTR9Q6PD62 1173 aa11.52□□□□□ -0.56
CHD3-201ENST00000330494 DPP8Q6V1X1 898 aaPredicted RBP11.52□□□□□ -0.56
CHD3-201ENST00000330494 FAM107BQ9H098 131 aa11.52□□□□□ -0.56
CHD3-201ENST00000330494 HOMER2Q9NSB8 354 aa11.52□□□□□ -0.56
CHD3-201ENST00000330494 ZNF532Q9HCE3 1301 aa11.52□□□□□ -0.56
CHD3-201ENST00000330494 SHTN1A0MZ66 631 aa11.52□□□□□ -0.57
CHD3-201ENST00000330494 NF2P35240 595 aa11.52□□□□□ -0.57
CHD3-201ENST00000330494 KCNQ4P56696 695 aa11.52□□□□□ -0.57
CHD3-201ENST00000330494 EIF4A1P60842 406 aaKnown RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 101.9 ms