RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 WLSQ5T9L3 541 aa13.58□□□□□ -0.23
SHMT2-201ENST00000328923 GOLGA1Q92805 767 aa13.58□□□□□ -0.23
SHMT2-201ENST00000328923 RILPL2Q969X0 211 aa13.58□□□□□ -0.23
SHMT2-201ENST00000328923 OSBPL5Q9H0X9 879 aaPredicted RBP13.58□□□□□ -0.23
SHMT2-201ENST00000328923 ZSWIM4Q9H7M6 989 aa13.58□□□□□ -0.23
SHMT2-201ENST00000328923 A0A087WWV3 80 aa13.58□□□□□ -0.24
SHMT2-201ENST00000328923 FNTAP49354 379 aa13.58□□□□□ -0.24
SHMT2-201ENST00000328923 RBBP5Q15291 538 aaKnown RBP13.58□□□□□ -0.24
SHMT2-201ENST00000328923 HSP90AB2PQ58FF8 381 aa13.58□□□□□ -0.24
SHMT2-201ENST00000328923 FAM173BQ6P4H8 233 aa13.58□□□□□ -0.24
SHMT2-201ENST00000328923 RABEP2Q9H5N1 569 aa13.58□□□□□ -0.24
SHMT2-201ENST00000328923 RGPD1P0DJD0 1748 aa13.57□□□□□ -0.24
SHMT2-201ENST00000328923 A0A1B0GUA9 196 aa13.57□□□□□ -0.24
SHMT2-201ENST00000328923 NR1I2O75469 434 aa13.57□□□□□ -0.24
SHMT2-201ENST00000328923 CAVIN2O95810 425 aa13.57□□□□□ -0.24
SHMT2-201ENST00000328923 AK2P54819 239 aa13.57□□□□□ -0.24
SHMT2-201ENST00000328923 AFAP1L1Q8TED9 768 aa13.57□□□□□ -0.24
SHMT2-201ENST00000328923 SH2B1Q9NRF2 756 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-201ENST00000328923 SNX14Q9Y5W7 946 aa13.57□□□□□ -0.24
SHMT2-201ENST00000328923 VPS37CA5D8V6 355 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-201ENST00000328923 TMCO5BA8MYB1 307 aa13.57□□□□□ -0.24
SHMT2-201ENST00000328923 MAP3K9P80192 1104 aa13.57□□□□□ -0.24
SHMT2-201ENST00000328923 NAA25Q14CX7 972 aa13.57□□□□□ -0.24
SHMT2-201ENST00000328923 NUTM2GQ5VZR2 741 aa13.57□□□□□ -0.24
SHMT2-201ENST00000328923 NFXL1Q6ZNB6 911 aa13.57□□□□□ -0.24
SHMT2-201ENST00000328923 RUFY3Q7L099 469 aa13.57□□□□□ -0.24
SHMT2-201ENST00000328923 CADPS2Q86UW7 1296 aa13.57□□□□□ -0.24
SHMT2-201ENST00000328923 ZSCAN31Q96LW9 406 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-201ENST00000328923 ABCB6Q9NP58 842 aa13.57□□□□□ -0.24
SHMT2-201ENST00000328923 DDX19AQ9NUU7 478 aaKnown RBP13.57□□□□□ -0.24
SHMT2-201ENST00000328923 L1RE1Q9UN81 338 aa13.57□□□□□ -0.24
SHMT2-201ENST00000328923 MRFAP1Q9Y605 127 aa13.57□□□□□ -0.24
SHMT2-201ENST00000328923 MAP3K19Q56UN5 1328 aa13.57□□□□□ -0.24
SHMT2-201ENST00000328923 BECN2A8MW95 431 aa13.56□□□□□ -0.24
SHMT2-201ENST00000328923 RNF40O75150 1001 aa13.56□□□□□ -0.24
SHMT2-201ENST00000328923 ECEL1O95672 775 aa13.56□□□□□ -0.24
SHMT2-201ENST00000328923 SFPQP23246 707 aaKnown RBP eCLIP13.56□□□□□ -0.24
SHMT2-201ENST00000328923 ATP8B2P98198 1209 aa13.56□□□□□ -0.24
SHMT2-201ENST00000328923 RBM33Q96EV2 1170 aaKnown RBP13.56□□□□□ -0.24
SHMT2-201ENST00000328923 XAGE2Q96GT9 111 aa13.56□□□□□ -0.24
SHMT2-201ENST00000328923 PXDNLA1KZ92 1463 aa13.56□□□□□ -0.24
SHMT2-201ENST00000328923 MARF1Q9Y4F3 1742 aaKnown RBP13.56□□□□□ -0.24
SHMT2-201ENST00000328923 PYGLP06737 847 aa13.56□□□□□ -0.24
SHMT2-201ENST00000328923 CCDC96Q2M329 555 aa13.56□□□□□ -0.24
SHMT2-201ENST00000328923 SLC5A9Q2M3M2 681 aa13.56□□□□□ -0.24
SHMT2-201ENST00000328923 TSHZ3Q63HK5 1081 aa13.56□□□□□ -0.24
SHMT2-201ENST00000328923 TMC6Q7Z403 805 aa13.56□□□□□ -0.24
SHMT2-201ENST00000328923 HNRNPLLQ8WVV9 542 aaKnown RBP13.56□□□□□ -0.24
SHMT2-201ENST00000328923 PNKPQ96T60 521 aa13.56□□□□□ -0.24
SHMT2-201ENST00000328923 CACNA1FO60840 1977 aa13.56□□□□□ -0.24
SHMT2-201ENST00000328923 CRB1P82279 1406 aa13.55□□□□□ -0.24
SHMT2-201ENST00000328923 ENO4A6NNW6 628 aa13.55□□□□□ -0.24
SHMT2-201ENST00000328923 NAP1L1P55209 391 aaKnown RBP13.55□□□□□ -0.24
SHMT2-201ENST00000328923 DCTN1Q14203 1278 aa13.55□□□□□ -0.24
SHMT2-201ENST00000328923 CASP8Q14790 479 aa13.55□□□□□ -0.24
SHMT2-201ENST00000328923 SULT6B1Q6IMI4 303 aa13.55□□□□□ -0.24
SHMT2-201ENST00000328923 DHX40Q8IX18 779 aaKnown RBP13.55□□□□□ -0.24
SHMT2-201ENST00000328923 CCDC150Q8NCX0 1101 aa13.55□□□□□ -0.24
SHMT2-201ENST00000328923 C3orf20Q8ND61 904 aa13.55□□□□□ -0.24
SHMT2-201ENST00000328923 WDR24Q96S15 920 aa13.55□□□□□ -0.24
SHMT2-201ENST00000328923 ANKZF1Q9H8Y5 726 aa13.55□□□□□ -0.24
SHMT2-201ENST00000328923 USP54Q70EL1 1684 aa13.55□□□□□ -0.24
SHMT2-201ENST00000328923 FAM208AQ9UK61 1670 aaKnown RBP13.55□□□□□ -0.24
SHMT2-201ENST00000328923 SLC4A2P04920 1241 aa13.55□□□□□ -0.24
SHMT2-201ENST00000328923 PECAM1P16284 738 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-201ENST00000328923 KCNJ6P48051 423 aa13.55□□□□□ -0.24
SHMT2-201ENST00000328923 KRT85P78386 507 aa13.55□□□□□ -0.24
SHMT2-201ENST00000328923 LSG1Q9H089 658 aaKnown RBP13.55□□□□□ -0.24
SHMT2-201ENST00000328923 EHD4Q9H223 541 aa13.55□□□□□ -0.24
SHMT2-201ENST00000328923 DDX20Q9UHI6 824 aaKnown RBP13.55□□□□□ -0.24
SHMT2-201ENST00000328923 GOLGA6L4A6NEF3 574 aa13.54□□□□□ -0.24
SHMT2-201ENST00000328923 GJB2P29033 226 aa13.54□□□□□ -0.24
SHMT2-201ENST00000328923 RAB27AP51159 221 aa13.54□□□□□ -0.24
SHMT2-201ENST00000328923 NLRP6P59044 892 aa13.54□□□□□ -0.24
SHMT2-201ENST00000328923 FERMT3Q86UX7 667 aa13.54□□□□□ -0.24
SHMT2-201ENST00000328923 CEP57Q86XR8 500 aa13.54□□□□□ -0.24
SHMT2-201ENST00000328923 UNC5CLQ8IV45 518 aa13.54□□□□□ -0.24
SHMT2-201ENST00000328923 MSL3Q8N5Y2 521 aaKnown RBP13.54□□□□□ -0.24
SHMT2-201ENST00000328923 SBNO1A3KN83 1393 aa13.54□□□□□ -0.24
SHMT2-201ENST00000328923 FLT4P35916 1363 aa13.54□□□□□ -0.24
SHMT2-201ENST00000328923 AMOTL1Q8IY63 956 aa13.54□□□□□ -0.24
SHMT2-201ENST00000328923 SPDYE1Q8NFV5 336 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-201ENST00000328923 TM6SF1Q9BZW5 370 aa13.54□□□□□ -0.24
SHMT2-201ENST00000328923 IL25Q9H293 177 aa13.54□□□□□ -0.24
SHMT2-201ENST00000328923 HYPKQ9NX55 129 aa13.54□□□□□ -0.24
SHMT2-201ENST00000328923 IMPACTQ9P2X3 320 aa13.54□□□□□ -0.24
SHMT2-201ENST00000328923 G3BP2Q9UN86 482 aaKnown RBP13.54□□□□□ -0.24
SHMT2-201ENST00000328923 SF3A1Q15459 793 aaKnown RBP13.53□□□□□ -0.24
SHMT2-201ENST00000328923 NUTM1Q86Y26 1132 aa13.53□□□□□ -0.24
SHMT2-201ENST00000328923 RPUSD2Q8IZ73 545 aaKnown RBP13.53□□□□□ -0.24
SHMT2-201ENST00000328923 DRAXINQ8NBI3 349 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-201ENST00000328923 SPDL1Q96EA4 605 aa13.53□□□□□ -0.24
SHMT2-201ENST00000328923 PHF8Q9UPP1 1060 aa13.53□□□□□ -0.24
SHMT2-201ENST00000328923 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-201ENST00000328923 LRRIQ3A6PVS8 624 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-201ENST00000328923 LARGE1O95461 756 aa13.53□□□□□ -0.24
SHMT2-201ENST00000328923 USP5P45974 858 aa13.53□□□□□ -0.24
SHMT2-201ENST00000328923 CDCA2Q69YH5 1023 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-201ENST00000328923 PROSER2Q86WR7 435 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-201ENST00000328923 CEP112Q8N8E3 955 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms