RNA–Protein interactions for RNA: ENST00000311487.9

HMGA1-201, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 1,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-201ENST00000311487 TTF1Q15361 905 aaPredicted RBP22■■□□□ 1.11
HMGA1-201ENST00000311487 MICALL2Q8IY33 904 aa22■■□□□ 1.11
HMGA1-201ENST00000311487 KBTBD3Q8NAB2 608 aa22■■□□□ 1.11
HMGA1-201ENST00000311487 NSUN4Q96CB9 384 aaKnown RBP22■■□□□ 1.11
HMGA1-201ENST00000311487 GMLQ99445 158 aa22■■□□□ 1.11
HMGA1-201ENST00000311487 CNOT7Q9UIV1 285 aaKnown RBP22■■□□□ 1.11
HMGA1-201ENST00000311487 SALL1Q9NSC2 1324 aa22■■□□□ 1.11
HMGA1-201ENST00000311487 SAMD7Q7Z3H4 446 aa22■■□□□ 1.11
HMGA1-201ENST00000311487 PDS5AQ29RF7 1337 aaKnown RBP21.99■■□□□ 1.11
HMGA1-201ENST00000311487 USP17L8P0C7I0 530 aa21.99■■□□□ 1.11
HMGA1-201ENST00000311487 MAP3K12Q12852 859 aa21.99■■□□□ 1.11
HMGA1-201ENST00000311487 MIGA1Q8NAN2 632 aa21.99■■□□□ 1.11
HMGA1-201ENST00000311487 GLTPD2A6NH11 291 aa21.98■■□□□ 1.11
HMGA1-201ENST00000311487 PDE6AP16499 860 aa21.98■■□□□ 1.11
HMGA1-201ENST00000311487 ZGPATQ8N5A5 531 aaKnown RBP21.98■■□□□ 1.11
HMGA1-201ENST00000311487 SEC62Q99442 399 aaKnown RBP21.98■■□□□ 1.11
HMGA1-201ENST00000311487 SCAF8Q9UPN6 1271 aaKnown RBP21.98■■□□□ 1.11
HMGA1-201ENST00000311487 ZNF532Q9HCE3 1301 aa21.98■■□□□ 1.11
HMGA1-201ENST00000311487 ADAMTSL1Q8N6G6 1762 aa21.98■■□□□ 1.11
HMGA1-201ENST00000311487 CYP7A1P22680 504 aa21.98■■□□□ 1.11
HMGA1-201ENST00000311487 TBC1D10BQ4KMP7 808 aaPredicted RBP21.98■■□□□ 1.11
HMGA1-201ENST00000311487 SPTY2D1Q68D10 685 aaPredicted RBP21.98■■□□□ 1.11
HMGA1-201ENST00000311487 NAA16Q6N069 864 aaPredicted RBP21.98■■□□□ 1.11
HMGA1-201ENST00000311487 AGBL3Q8NEM8 1001 aa21.98■■□□□ 1.11
HMGA1-201ENST00000311487 PSME4Q14997 1843 aa21.97■■□□□ 1.11
HMGA1-201ENST00000311487 BMP2KLQ5H9B9 411 aa21.97■■□□□ 1.11
HMGA1-201ENST00000311487 OGFOD1Q8N543 542 aa21.97■■□□□ 1.11
HMGA1-201ENST00000311487 FAM227BQ96M60 508 aa21.97■■□□□ 1.11
HMGA1-201ENST00000311487 GPRC5DQ9NZD1 345 aa21.96■■□□□ 1.11
HMGA1-201ENST00000311487 CRKP46108 304 aa21.96■■□□□ 1.11
HMGA1-201ENST00000311487 MYO3BQ8WXR4 1341 aa21.95■■□□□ 1.1
HMGA1-201ENST00000311487 ADD2P35612 726 aa21.95■■□□□ 1.1
HMGA1-201ENST00000311487 FKBP1AP62942 108 aaKnown RBP21.95■■□□□ 1.1
HMGA1-201ENST00000311487 DYNLL1P63167 89 aaKnown RBP21.95■■□□□ 1.1
HMGA1-201ENST00000311487 CFAP100Q494V2 611 aa21.95■■□□□ 1.1
HMGA1-201ENST00000311487 CWC27Q6UX04 472 aaKnown RBP21.95■■□□□ 1.1
HMGA1-201ENST00000311487 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.95■■□□□ 1.12e-7■□□□□ 9.5
HMGA1-201ENST00000311487 PUS7LQ9H0K6 701 aaKnown RBP21.95■■□□□ 1.1
HMGA1-201ENST00000311487 AATFQ9NY61 560 aaKnown RBP eCLIP21.95■■□□□ 1.15e-10■□□□□ 8.3
HMGA1-201ENST00000311487 TCRBV5S4A2TA0A5A2 114 aa21.94■■□□□ 1.1
HMGA1-201ENST00000311487 RNF113AO15541 343 aaKnown RBP21.94■■□□□ 1.1
HMGA1-201ENST00000311487 CCDC129Q6ZRS4 1044 aa21.94■■□□□ 1.1
HMGA1-201ENST00000311487 RRAGCQ9HB90 399 aa21.94■■□□□ 1.1
HMGA1-201ENST00000311487 MYOZ2Q9NPC6 264 aa21.94■■□□□ 1.1
HMGA1-201ENST00000311487 ASTN2O75129 1339 aaPredicted RBP21.94■■□□□ 1.1
HMGA1-201ENST00000311487 NMIQ13287 307 aaPredicted RBP21.94■■□□□ 1.1
HMGA1-201ENST00000311487 NBPF9Q3BBW0 867 aa21.94■■□□□ 1.1
HMGA1-201ENST00000311487 TRPM4Q8TD43 1214 aa21.94■■□□□ 1.1
HMGA1-201ENST00000311487 PRMT6Q96LA8 375 aaPredicted RBP21.94■■□□□ 1.1
HMGA1-201ENST00000311487 DAGLAQ9Y4D2 1042 aa21.94■■□□□ 1.1
HMGA1-201ENST00000311487 AK9Q5TCS8 1911 aa21.93■■□□□ 1.1
HMGA1-201ENST00000311487 A0A0D9SFI3 127 aa21.93■■□□□ 1.1
HMGA1-201ENST00000311487 POTECB2RU33 542 aa21.93■■□□□ 1.1
HMGA1-201ENST00000311487 RPS12P25398 132 aaKnown RBP21.93■■□□□ 1.1
HMGA1-201ENST00000311487 CACNB3P54284 484 aa21.93■■□□□ 1.1
HMGA1-201ENST00000311487 DPF2Q92785 391 aa21.93■■□□□ 1.1
HMGA1-201ENST00000311487 OSBP2Q969R2 916 aa21.93■■□□□ 1.1
HMGA1-201ENST00000311487 TEKT1Q969V4 418 aa21.93■■□□□ 1.1
HMGA1-201ENST00000311487 IL25Q9H293 177 aa21.93■■□□□ 1.1
HMGA1-201ENST00000311487 H7C1D1 291 aa21.92■■□□□ 1.1
HMGA1-201ENST00000311487 M0R2C6 588 aa21.92■■□□□ 1.1
HMGA1-201ENST00000311487 ZBTB22O15209 634 aa21.92■■□□□ 1.1
HMGA1-201ENST00000311487 LMOD1P29536 600 aaPredicted RBP21.92■■□□□ 1.1
HMGA1-201ENST00000311487 NMRK2Q9NPI5 230 aa21.92■■□□□ 1.1
HMGA1-201ENST00000311487 HDAC9Q9UKV0 1011 aa21.92■■□□□ 1.1
HMGA1-201ENST00000311487 DOCK2Q92608 1830 aa21.92■■□□□ 1.1
HMGA1-201ENST00000311487 MYH2Q9UKX2 1941 aa21.92■■□□□ 1.1
HMGA1-201ENST00000311487 BTDP43251 543 aa21.92■■□□□ 1.1
HMGA1-201ENST00000311487 DIAPH3Q9NSV4 1193 aa21.92■■□□□ 1.1
HMGA1-201ENST00000311487 SUGT1Q9Y2Z0 365 aa21.92■■□□□ 1.1
HMGA1-201ENST00000311487 ZC3H4Q9UPT8 1303 aaKnown RBP21.91■■□□□ 1.1
HMGA1-201ENST00000311487 CLRN2A0PK11 232 aa21.91■■□□□ 1.1
HMGA1-201ENST00000311487 CHMLP26374 656 aa21.91■■□□□ 1.1
HMGA1-201ENST00000311487 TDRD3Q9H7E2 651 aaKnown RBP21.91■■□□□ 1.1
HMGA1-201ENST00000311487 ARMT1Q9H993 441 aa21.91■■□□□ 1.1
HMGA1-201ENST00000311487 MROH7-TTC4A0A0A0MT08 1334 aa21.91■■□□□ 1.1
HMGA1-201ENST00000311487 HIRAP54198 1017 aaPredicted RBP21.9■■□□□ 1.1
HMGA1-201ENST00000311487 DLGAP5Q15398 846 aa21.9■■□□□ 1.1
HMGA1-201ENST00000311487 EAPPQ56P03 285 aaPredicted RBP21.9■■□□□ 1.1
HMGA1-201ENST00000311487 APOBEC3HQ6NTF7 200 aaKnown RBP21.9■■□□□ 1.1
HMGA1-201ENST00000311487 KIF4BQ2VIQ3 1234 aa21.9■■□□□ 1.1
HMGA1-201ENST00000311487 HACL1Q9UJ83 578 aa21.9■■□□□ 1.1
HMGA1-201ENST00000311487 SERPINA10Q9UK55 444 aa21.9■■□□□ 1.1
HMGA1-201ENST00000311487 WNT10BO00744 389 aa21.89■■□□□ 1.09
HMGA1-201ENST00000311487 MBD4O95243 580 aa21.89■■□□□ 1.09
HMGA1-201ENST00000311487 POTEIP0CG38 1075 aa21.89■■□□□ 1.09
HMGA1-201ENST00000311487 POTEJP0CG39 1038 aa21.89■■□□□ 1.09
HMGA1-201ENST00000311487 ZNF280AP59817 542 aaPredicted RBP21.89■■□□□ 1.09
HMGA1-201ENST00000311487 GSTO1P78417 241 aa21.89■■□□□ 1.09
HMGA1-201ENST00000311487 ZSCAN25Q6NSZ9 544 aa21.89■■□□□ 1.09
HMGA1-201ENST00000311487 LCORLQ8N3X6 602 aa21.89■■□□□ 1.09
HMGA1-201ENST00000311487 SH3RF3Q8TEJ3 882 aaPredicted RBP21.89■■□□□ 1.09
HMGA1-201ENST00000311487 MAST3O60307 1309 aa21.89■■□□□ 1.09
HMGA1-201ENST00000311487 EPHX2P34913 555 aa21.88■■□□□ 1.09
HMGA1-201ENST00000311487 UBE3CQ15386 1083 aa21.88■■□□□ 1.09
HMGA1-201ENST00000311487 ZNF589Q86UQ0 364 aaPredicted RBP21.88■■□□□ 1.09
HMGA1-201ENST00000311487 L3MBTL3Q96JM7 780 aaPredicted RBP21.88■■□□□ 1.09
HMGA1-201ENST00000311487 MYH7P12883 1935 aa21.88■■□□□ 1.09
HMGA1-201ENST00000311487 MAGEB6P1A0A0J9YX57 407 aa21.88■■□□□ 1.09
HMGA1-201ENST00000311487 SPDYE2BA6NHP3 402 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms