RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 TTLL12Q14166 644 aaPredicted RBP20.24■□□□□ 0.83
LSM1-201ENST00000311351 DEFB129Q9H1M3 183 aa20.24■□□□□ 0.83
LSM1-201ENST00000311351 SLC10A3P09131 477 aa20.23■□□□□ 0.83
LSM1-201ENST00000311351 NF2P35240 595 aa20.23■□□□□ 0.83
LSM1-201ENST00000311351 LBX1P52954 281 aa20.23■□□□□ 0.83
LSM1-201ENST00000311351 RASAL3Q86YV0 1011 aa20.23■□□□□ 0.83
LSM1-201ENST00000311351 PANK1Q8TE04 598 aa20.23■□□□□ 0.83
LSM1-201ENST00000311351 TDRD3Q9H7E2 651 aaKnown RBP20.23■□□□□ 0.83
LSM1-201ENST00000311351 FZD1Q9UP38 647 aa20.23■□□□□ 0.83
LSM1-201ENST00000311351 SPDYE2Q495Y8 402 aa20.22■□□□□ 0.83
LSM1-201ENST00000311351 ZNF70Q9UC06 446 aaPredicted RBP20.22■□□□□ 0.83
LSM1-201ENST00000311351 TSKSQ9UJT2 592 aa20.22■□□□□ 0.83
LSM1-201ENST00000311351 A0A1B0GUL7 405 aa20.21■□□□□ 0.83
LSM1-201ENST00000311351 TIMM10P62072 90 aa20.21■□□□□ 0.83
LSM1-201ENST00000311351 CCDC102AQ96A19 550 aa20.21■□□□□ 0.83
LSM1-201ENST00000311351 BEGAINQ9BUH8 593 aa20.21■□□□□ 0.83
LSM1-201ENST00000311351 OTOFQ9HC10 1997 aa20.21■□□□□ 0.83
LSM1-201ENST00000311351 ZBTB7BO15156 539 aaPredicted RBP20.2■□□□□ 0.82
LSM1-201ENST00000311351 KIF23Q02241 960 aaPredicted RBP20.2■□□□□ 0.82
LSM1-201ENST00000311351 CCDC102BQ68D86 513 aa20.2■□□□□ 0.82
LSM1-201ENST00000311351 WDR66Q8TBY9 1149 aa20.2■□□□□ 0.82
LSM1-201ENST00000311351 TEKT1Q969V4 418 aa20.2■□□□□ 0.82
LSM1-201ENST00000311351 GNL3LQ9NVN8 582 aaKnown RBP20.2■□□□□ 0.82
LSM1-201ENST00000311351 PPP2R3BQ9Y5P8 575 aa20.2■□□□□ 0.82
LSM1-201ENST00000311351 PRDX5P30044 214 aa20.19■□□□□ 0.82
LSM1-201ENST00000311351 POLA2Q14181 598 aa20.19■□□□□ 0.82
LSM1-201ENST00000311351 RASA3Q14644 834 aa20.19■□□□□ 0.82
LSM1-201ENST00000311351 IFFO2Q5TF58 517 aa20.19■□□□□ 0.82
LSM1-201ENST00000311351 CDAN1Q8IWY9 1227 aa20.19■□□□□ 0.82
LSM1-201ENST00000311351 XAGE2Q96GT9 111 aa20.19■□□□□ 0.82
LSM1-201ENST00000311351 PRDM10Q9NQV6 1147 aa20.19■□□□□ 0.82
LSM1-201ENST00000311351 MAST3O60307 1309 aa20.19■□□□□ 0.82
LSM1-201ENST00000311351 AKAP11Q9UKA4 1901 aa20.19■□□□□ 0.82
LSM1-201ENST00000311351 TCP10L2B9ZVM9 353 aa20.18■□□□□ 0.82
LSM1-201ENST00000311351 CACNB3P54284 484 aa20.18■□□□□ 0.82
LSM1-201ENST00000311351 HDLBPQ00341 1268 aaKnown RBP20.18■□□□□ 0.82
LSM1-201ENST00000311351 G3BP1Q13283 466 aaKnown RBP eCLIP20.18■□□□□ 0.82
LSM1-201ENST00000311351 RASGRF1Q13972 1273 aa20.18■□□□□ 0.82
LSM1-201ENST00000311351 NBPF12Q5TAG4 269 aaPredicted RBP20.18■□□□□ 0.82
LSM1-201ENST00000311351 TNS4Q8IZW8 715 aa20.18■□□□□ 0.82
LSM1-201ENST00000311351 ANGEL1Q9UNK9 670 aaKnown RBP20.18■□□□□ 0.82
LSM1-201ENST00000311351 SUGT1Q9Y2Z0 365 aa20.18■□□□□ 0.82
LSM1-201ENST00000311351 ATP8B2P98198 1209 aa20.17■□□□□ 0.82
LSM1-201ENST00000311351 ARMC9Q7Z3E5 817 aa20.17■□□□□ 0.82
LSM1-201ENST00000311351 SSH3Q8TE77 659 aa20.17■□□□□ 0.82
LSM1-201ENST00000311351 ZDHHC15Q96MV8 337 aa20.17■□□□□ 0.82
LSM1-201ENST00000311351 RCAN3Q9UKA8 241 aa20.17■□□□□ 0.82
LSM1-201ENST00000311351 DENND2AQ9ULE3 1009 aa20.17■□□□□ 0.82
LSM1-201ENST00000311351 AKAP2Q9Y2D5 859 aa20.17■□□□□ 0.82
LSM1-201ENST00000311351 MYH2Q9UKX2 1941 aa20.17■□□□□ 0.82
LSM1-201ENST00000311351 SEMA3EO15041 775 aa20.16■□□□□ 0.82
LSM1-201ENST00000311351 TNFAIP1Q13829 316 aa20.16■□□□□ 0.82
LSM1-201ENST00000311351 DIXDC1Q155Q3 683 aa20.16■□□□□ 0.82
LSM1-201ENST00000311351 NEUROD6Q96NK8 337 aa20.16■□□□□ 0.82
LSM1-201ENST00000311351 MKRN3Q13064 507 aaKnown RBP20.15■□□□□ 0.82
LSM1-201ENST00000311351 MVPQ14764 893 aaKnown RBP20.15■□□□□ 0.82
LSM1-201ENST00000311351 APOBEC3HQ6NTF7 200 aaKnown RBP20.15■□□□□ 0.82
LSM1-201ENST00000311351 TMEM39BQ9GZU3 492 aa20.15■□□□□ 0.82
LSM1-201ENST00000311351 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.15■□□□□ 0.82
LSM1-201ENST00000311351 SALL1Q9NSC2 1324 aa20.15■□□□□ 0.82
LSM1-201ENST00000311351 CASP8AP2Q9UKL3 1982 aa20.15■□□□□ 0.82
LSM1-201ENST00000311351 LDHBP07195 334 aaKnown RBP20.14■□□□□ 0.81
LSM1-201ENST00000311351 OS9Q13438 667 aaPredicted RBP20.14■□□□□ 0.81
LSM1-201ENST00000311351 LDLRAD1Q5T700 205 aa20.14■□□□□ 0.81
LSM1-201ENST00000311351 CEP85Q6P2H3 762 aa20.14■□□□□ 0.81
LSM1-201ENST00000311351 HHIPL2Q6UWX4 724 aa20.14■□□□□ 0.81
LSM1-201ENST00000311351 TEPSINQ96N21 525 aa20.14■□□□□ 0.81
LSM1-201ENST00000311351 DAGLAQ9Y4D2 1042 aa20.14■□□□□ 0.81
LSM1-201ENST00000311351 CA12O43570 354 aa20.13■□□□□ 0.81
LSM1-201ENST00000311351 PPP1R12BO60237 982 aaPredicted RBP20.13■□□□□ 0.81
LSM1-201ENST00000311351 SURF6O75683 361 aaKnown RBP20.13■□□□□ 0.81
LSM1-201ENST00000311351 SUPT20HL1Q3ZLR7 823 aa20.13■□□□□ 0.81
LSM1-201ENST00000311351 PI16Q6UXB8 463 aa20.13■□□□□ 0.81
LSM1-201ENST00000311351 CLMNQ96JQ2 1002 aa20.13■□□□□ 0.81
LSM1-201ENST00000311351 CSRNP1Q96S65 589 aa20.13■□□□□ 0.81
LSM1-201ENST00000311351 MRIQ9BWK5 157 aa20.13■□□□□ 0.81
LSM1-201ENST00000311351 COG6Q9Y2V7 657 aa20.13■□□□□ 0.81
LSM1-201ENST00000311351 PDS5AQ29RF7 1337 aaKnown RBP20.12■□□□□ 0.81
LSM1-201ENST00000311351 ZBTB22O15209 634 aa20.12■□□□□ 0.81
LSM1-201ENST00000311351 TNNI2P48788 182 aa20.12■□□□□ 0.81
LSM1-201ENST00000311351 MAP3K11Q16584 847 aa20.12■□□□□ 0.81
LSM1-201ENST00000311351 TMOD2Q9NZR1 351 aa20.12■□□□□ 0.81
LSM1-201ENST00000311351 LAMB1P07942 1786 aa20.12■□□□□ 0.81
LSM1-201ENST00000311351 MS4A1P11836 297 aa20.11■□□□□ 0.81
LSM1-201ENST00000311351 TNNI3KQ59H18 835 aa20.11■□□□□ 0.81
LSM1-201ENST00000311351 GORABQ5T7V8 394 aa20.11■□□□□ 0.81
LSM1-201ENST00000311351 ABCF2Q9UG63 623 aa20.11■□□□□ 0.81
LSM1-201ENST00000311351 FPGT-TNNI3KV9GXZ4 949 aa20.11■□□□□ 0.81
LSM1-201ENST00000311351 USP2O75604 605 aaPredicted RBP20.1■□□□□ 0.81
LSM1-201ENST00000311351 ZGPATQ8N5A5 531 aaKnown RBP20.1■□□□□ 0.81
LSM1-201ENST00000311351 RNF186Q9NXI6 227 aa20.1■□□□□ 0.81
LSM1-201ENST00000311351 HMG20BQ9P0W2 317 aa20.1■□□□□ 0.81
LSM1-201ENST00000311351 NOP58Q9Y2X3 529 aaKnown RBP20.1■□□□□ 0.81
LSM1-201ENST00000311351 AK9Q5TCS8 1911 aa20.1■□□□□ 0.81
LSM1-201ENST00000311351 MAST2Q6P0Q8 1798 aa20.09■□□□□ 0.81
LSM1-201ENST00000311351 TRPA1O75762 1119 aa20.09■□□□□ 0.81
LSM1-201ENST00000311351 ARID4AP29374 1257 aaPredicted RBP20.09■□□□□ 0.81
LSM1-201ENST00000311351 IREB2P48200 963 aaKnown RBP20.09■□□□□ 0.81
LSM1-201ENST00000311351 C20orf194Q5TEA3 1177 aa20.09■□□□□ 0.81
LSM1-201ENST00000311351 CDC42EP5Q6NZY7 148 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms