RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 CTAGE4Q8IX94 777 aa9.34□□□□□ -0.91
VPS41-202ENST00000310301 EBAG9O00559 213 aa9.34□□□□□ -0.91
VPS41-202ENST00000310301 TRAF1Q13077 416 aa9.34□□□□□ -0.91
VPS41-202ENST00000310301 KIF22Q14807 665 aa9.34□□□□□ -0.91
VPS41-202ENST00000310301 SULF1Q8IWU6 871 aa9.33□□□□□ -0.92
VPS41-202ENST00000310301 TBC1D32Q96NH3 1257 aa9.33□□□□□ -0.92
VPS41-202ENST00000310301 NSRP1Q9H0G5 558 aaKnown RBP9.33□□□□□ -0.92
VPS41-202ENST00000310301 TTC12Q9H892 705 aaPredicted RBP9.33□□□□□ -0.92
VPS41-202ENST00000310301 A0A1B0GUL7 405 aa9.33□□□□□ -0.92
VPS41-202ENST00000310301 B4DLN1 442 aa9.33□□□□□ -0.92
VPS41-202ENST00000310301 MRPL12P52815 198 aaKnown RBP9.33□□□□□ -0.92
VPS41-202ENST00000310301 CKAP4Q07065 602 aaKnown RBP9.33□□□□□ -0.92
VPS41-202ENST00000310301 NBPF11Q86T75 865 aa9.33□□□□□ -0.92
VPS41-202ENST00000310301 ZBTB9Q96C00 473 aa9.33□□□□□ -0.92
VPS41-202ENST00000310301 OPA1O60313 960 aa9.33□□□□□ -0.92
VPS41-202ENST00000310301 PRPF4BQ13523 1007 aaKnown RBP9.33□□□□□ -0.92
VPS41-202ENST00000310301 KRBA2Q6ZNG9 492 aa9.33□□□□□ -0.92
VPS41-202ENST00000310301 CERS3Q8IU89 383 aa9.33□□□□□ -0.92
VPS41-202ENST00000310301 ZNF444Q8N0Y2 327 aaPredicted RBP9.33□□□□□ -0.92
VPS41-202ENST00000310301 FSD2A1L4K1 749 aa9.33□□□□□ -0.92
VPS41-202ENST00000310301 MACROD2A1Z1Q3 448 aa9.33□□□□□ -0.92
VPS41-202ENST00000310301 IL15P40933 162 aaPredicted RBP9.33□□□□□ -0.92
VPS41-202ENST00000310301 NAA25Q14CX7 972 aa9.33□□□□□ -0.92
VPS41-202ENST00000310301 ZNF496Q96IT1 587 aaPredicted RBP9.33□□□□□ -0.92
VPS41-202ENST00000310301 FGFR1OPO95684 399 aaKnown RBP9.32□□□□□ -0.92
VPS41-202ENST00000310301 ANO6Q4KMQ2 910 aa9.32□□□□□ -0.92
VPS41-202ENST00000310301 CPSF2Q9P2I0 782 aaKnown RBP9.32□□□□□ -0.92
VPS41-202ENST00000310301 BIN2Q9UBW5 565 aaPredicted RBP9.32□□□□□ -0.92
VPS41-202ENST00000310301 IQCA1LA6NCM1 817 aa9.32□□□□□ -0.92
VPS41-202ENST00000310301 VGLL3A8MV65 326 aa9.32□□□□□ -0.92
VPS41-202ENST00000310301 MTIF2P46199 727 aaKnown RBP9.32□□□□□ -0.92
VPS41-202ENST00000310301 RSRC1Q96IZ7 334 aaKnown RBP9.32□□□□□ -0.92
VPS41-202ENST00000310301 GRM8O00222 908 aa9.32□□□□□ -0.92
VPS41-202ENST00000310301 A1BGP04217 495 aa9.32□□□□□ -0.92
VPS41-202ENST00000310301 GOLGA1Q92805 767 aa9.32□□□□□ -0.92
VPS41-202ENST00000310301 CEP83Q9Y592 693 aa9.32□□□□□ -0.92
VPS41-202ENST00000310301 U3KPZ7 1027 aaPredicted RBP9.32□□□□□ -0.92
VPS41-202ENST00000310301 SLIT1O75093 1534 aa9.32□□□□□ -0.92
VPS41-202ENST00000310301 CAVIN2O95810 425 aa9.32□□□□□ -0.92
VPS41-202ENST00000310301 CCDC155Q8N6L0 562 aa9.32□□□□□ -0.92
VPS41-202ENST00000310301 TBC1D22AQ8WUA7 517 aa9.32□□□□□ -0.92
VPS41-202ENST00000310301 SPHKAPQ2M3C7 1700 aa9.32□□□□□ -0.92
VPS41-202ENST00000310301 LAMC1P11047 1609 aa9.32□□□□□ -0.92
VPS41-202ENST00000310301 NPR1P16066 1061 aa9.32□□□□□ -0.92
VPS41-202ENST00000310301 ATP2B4P23634 1241 aa9.32□□□□□ -0.92
VPS41-202ENST00000310301 NOP2P46087 812 aaKnown RBP9.32□□□□□ -0.92
VPS41-202ENST00000310301 ATP2B3Q16720 1220 aa9.32□□□□□ -0.92
VPS41-202ENST00000310301 TBC1D9Q6ZT07 1266 aa9.32□□□□□ -0.92
VPS41-202ENST00000310301 ANKS4BQ8N8V4 417 aa9.32□□□□□ -0.92
VPS41-202ENST00000310301 EHBP1Q8NDI1 1231 aa9.32□□□□□ -0.92
VPS41-202ENST00000310301 CRNKL1Q9BZJ0 848 aaKnown RBP9.32□□□□□ -0.92
VPS41-202ENST00000310301 CPSF1Q10570 1443 aaKnown RBP9.32□□□□□ -0.92
VPS41-202ENST00000310301 DLC1Q96QB1 1528 aa9.31□□□□□ -0.92
VPS41-202ENST00000310301 PREX1Q8TCU6 1659 aa9.31□□□□□ -0.92
VPS41-202ENST00000310301 BBOX1O75936 387 aa9.31□□□□□ -0.92
VPS41-202ENST00000310301 CCDC96Q2M329 555 aa9.31□□□□□ -0.92
VPS41-202ENST00000310301 CCDC114Q96M63 670 aa9.31□□□□□ -0.92
VPS41-202ENST00000310301 SSH2Q76I76 1423 aa9.31□□□□□ -0.92
VPS41-202ENST00000310301 UBASH3AP57075 661 aa9.31□□□□□ -0.92
VPS41-202ENST00000310301 GTF3C6Q969F1 213 aa9.31□□□□□ -0.92
VPS41-202ENST00000310301 HOMER2Q9NSB8 354 aa9.31□□□□□ -0.92
VPS41-202ENST00000310301 GLRX3O76003 335 aaKnown RBP9.31□□□□□ -0.92
VPS41-202ENST00000310301 ZNF76P36508 570 aa9.31□□□□□ -0.92
VPS41-202ENST00000310301 MTFR1LQ9H019 292 aa9.31□□□□□ -0.92
VPS41-202ENST00000310301 PICK1Q9NRD5 415 aa9.31□□□□□ -0.92
VPS41-202ENST00000310301 ASAP1Q9ULH1 1129 aa9.31□□□□□ -0.92
VPS41-202ENST00000310301 PPRC1Q5VV67 1664 aaKnown RBP9.31□□□□□ -0.92
VPS41-202ENST00000310301 A0A1W2PRG0 241 aa9.31□□□□□ -0.92
VPS41-202ENST00000310301 KIF4AO95239 1232 aa9.31□□□□□ -0.92
VPS41-202ENST00000310301 ANXA1P04083 346 aa9.31□□□□□ -0.92
VPS41-202ENST00000310301 SARNPP82979 210 aaKnown RBP9.31□□□□□ -0.92
VPS41-202ENST00000310301 MXRA7P84157 204 aa9.31□□□□□ -0.92
VPS41-202ENST00000310301 WDR66Q8TBY9 1149 aa9.31□□□□□ -0.92
VPS41-202ENST00000310301 PAIP2Q9BPZ3 127 aaKnown RBP9.31□□□□□ -0.92
VPS41-202ENST00000310301 PHAXQ9H814 394 aaKnown RBP9.31□□□□□ -0.92
VPS41-202ENST00000310301 SPINK5Q9NQ38 1064 aaPredicted RBP9.31□□□□□ -0.92
VPS41-202ENST00000310301 CLTCL1P53675 1640 aa9.31□□□□□ -0.92
VPS41-202ENST00000310301 KIF5BP33176 963 aa9.3□□□□□ -0.92
VPS41-202ENST00000310301 RARSP54136 660 aaKnown RBP9.3□□□□□ -0.92
VPS41-202ENST00000310301 CFAP57Q96MR6 1250 aa9.3□□□□□ -0.92
VPS41-202ENST00000310301 LGR6Q9HBX8 967 aa9.3□□□□□ -0.92
VPS41-202ENST00000310301 GPBP1L1Q9HC44 474 aaPredicted RBP9.3□□□□□ -0.92
VPS41-202ENST00000310301 RICTORQ6R327 1708 aa9.3□□□□□ -0.92
VPS41-202ENST00000310301 PHACTR2O75167 634 aa9.3□□□□□ -0.92
VPS41-202ENST00000310301 CCT2P78371 535 aaKnown RBP9.3□□□□□ -0.92
VPS41-202ENST00000310301 DLGAP5Q15398 846 aa9.3□□□□□ -0.92
VPS41-202ENST00000310301 SLC15A2Q16348 729 aa9.3□□□□□ -0.92
VPS41-202ENST00000310301 HS1BP3Q53T59 392 aa9.3□□□□□ -0.92
VPS41-202ENST00000310301 LMBR1LQ6UX01 489 aa9.3□□□□□ -0.92
VPS41-202ENST00000310301 CLEC4GQ6UXB4 293 aa9.3□□□□□ -0.92
VPS41-202ENST00000310301 RNF41Q9H4P4 317 aaPredicted RBP9.3□□□□□ -0.92
VPS41-202ENST00000310301 USP31Q70CQ4 1352 aa9.3□□□□□ -0.92
VPS41-202ENST00000310301 SEPT6Q14141 434 aa9.3□□□□□ -0.92
VPS41-202ENST00000310301 CCDC97Q96F63 343 aaPredicted RBP9.3□□□□□ -0.92
VPS41-202ENST00000310301 MASTLQ96GX5 879 aa9.3□□□□□ -0.92
VPS41-202ENST00000310301 DRC1Q96MC2 740 aa9.3□□□□□ -0.92
VPS41-202ENST00000310301 UBA5Q9GZZ9 404 aa9.3□□□□□ -0.92
VPS41-202ENST00000310301 SH2D4AQ9H788 454 aa9.3□□□□□ -0.92
VPS41-202ENST00000310301 IGSF1Q8N6C5 1336 aa9.3□□□□□ -0.92
VPS41-202ENST00000310301 F8W031 263 aaPredicted RBP9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms