RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 CALM2P0DP24 149 aa19.56■□□□□ 0.72
SYNPO-201ENST00000307662 CALM3P0DP25 149 aa19.56■□□□□ 0.72
SYNPO-201ENST00000307662 SLC9C2Q5TAH2 1124 aa19.56■□□□□ 0.72
SYNPO-201ENST00000307662 CYP26C1Q6V0L0 522 aa19.56■□□□□ 0.72
SYNPO-201ENST00000307662 UHRF1BP1LA0JNW5 1464 aa19.56■□□□□ 0.72
SYNPO-201ENST00000307662 GSTA5Q7RTV2 222 aa19.55■□□□□ 0.72
SYNPO-201ENST00000307662 USP37Q86T82 979 aa19.55■□□□□ 0.72
SYNPO-201ENST00000307662 IFT74Q96LB3 600 aa19.55■□□□□ 0.72
SYNPO-201ENST00000307662 GADD45BO75293 160 aaPredicted RBP19.55■□□□□ 0.72
SYNPO-201ENST00000307662 PPFIBP2Q8ND30 876 aa19.55■□□□□ 0.72
SYNPO-201ENST00000307662 CYP7A1P22680 504 aa19.54■□□□□ 0.72
SYNPO-201ENST00000307662 XAGE3Q8WTP9 111 aa19.54■□□□□ 0.72
SYNPO-201ENST00000307662 CCDC97Q96F63 343 aaPredicted RBP19.54■□□□□ 0.72
SYNPO-201ENST00000307662 TSPY3P0CV98 308 aa19.54■□□□□ 0.72
SYNPO-201ENST00000307662 TSPY8P0CW00 308 aa19.54■□□□□ 0.72
SYNPO-201ENST00000307662 MKRN1Q9UHC7 482 aaKnown RBP19.54■□□□□ 0.72
SYNPO-201ENST00000307662 HPDP32754 393 aaPredicted RBP19.54■□□□□ 0.72
SYNPO-201ENST00000307662 CCT6AP40227 531 aaKnown RBP19.54■□□□□ 0.72
SYNPO-201ENST00000307662 MAP3K9P80192 1104 aa19.54■□□□□ 0.72
SYNPO-201ENST00000307662 C8orf74Q6P047 294 aa19.54■□□□□ 0.72
SYNPO-201ENST00000307662 LMBR1LQ6UX01 489 aa19.54■□□□□ 0.72
SYNPO-201ENST00000307662 SWAP70Q9UH65 585 aa19.54■□□□□ 0.72
SYNPO-201ENST00000307662 TMEM110-MUSTN1A8MSY1 372 aa19.54■□□□□ 0.72
SYNPO-201ENST00000307662 CCDC50Q8IVM0 306 aa19.54■□□□□ 0.72
SYNPO-201ENST00000307662 CCDC26Q8TAB7 109 aa19.54■□□□□ 0.72
SYNPO-201ENST00000307662 ARHGAP6O43182 974 aa19.53■□□□□ 0.72
SYNPO-201ENST00000307662 ARHGAP25P42331 645 aa19.53■□□□□ 0.72
SYNPO-201ENST00000307662 RGS22Q8NE09 1264 aa19.53■□□□□ 0.72
SYNPO-201ENST00000307662 TRIM7Q9C029 511 aa19.53■□□□□ 0.72
SYNPO-201ENST00000307662 MRVI1Q9Y6F6 885 aa19.53■□□□□ 0.72
SYNPO-201ENST00000307662 RIMS2Q9UQ26 1411 aa19.53■□□□□ 0.72
SYNPO-201ENST00000307662 ATP11AP98196 1134 aa19.53■□□□□ 0.72
SYNPO-201ENST00000307662 CPSF2Q9P2I0 782 aaKnown RBP19.53■□□□□ 0.72
SYNPO-201ENST00000307662 RNF123Q5XPI4 1314 aa19.53■□□□□ 0.72
SYNPO-201ENST00000307662 SEC62Q99442 399 aaKnown RBP19.53■□□□□ 0.72
SYNPO-201ENST00000307662 TMEM63CQ9P1W3 806 aa19.53■□□□□ 0.72
SYNPO-201ENST00000307662 NAPAP54920 295 aa19.53■□□□□ 0.72
SYNPO-201ENST00000307662 SLC4A8Q2Y0W8 1093 aa19.53■□□□□ 0.72
SYNPO-201ENST00000307662 INTS8Q75QN2 995 aaKnown RBP19.53■□□□□ 0.72
SYNPO-201ENST00000307662 SAMM50Q9Y512 469 aa19.53■□□□□ 0.72
SYNPO-201ENST00000307662 SNX14Q9Y5W7 946 aa19.53■□□□□ 0.72
SYNPO-201ENST00000307662 MSH6P52701 1360 aa19.53■□□□□ 0.72
SYNPO-201ENST00000307662 CALCOCO2Q13137 446 aa19.52■□□□□ 0.72
SYNPO-201ENST00000307662 LLPHQ9BRT6 129 aaKnown RBP19.52■□□□□ 0.72
SYNPO-201ENST00000307662 CTNND2Q9UQB3 1225 aa19.52■□□□□ 0.72
SYNPO-201ENST00000307662 ZMYM4Q5VZL5 1548 aa19.52■□□□□ 0.72
SYNPO-201ENST00000307662 VIMP08670 466 aaKnown RBP19.52■□□□□ 0.72
SYNPO-201ENST00000307662 CCDC25Q86WR0 208 aa19.52■□□□□ 0.72
SYNPO-201ENST00000307662 LEO1Q8WVC0 666 aaPredicted RBP19.52■□□□□ 0.72
SYNPO-201ENST00000307662 ZFYVE9O95405 1425 aa19.52■□□□□ 0.71
SYNPO-201ENST00000307662 CLNS1AP54105 237 aaKnown RBP19.52■□□□□ 0.71
SYNPO-201ENST00000307662 KRT79Q5XKE5 535 aa19.52■□□□□ 0.71
SYNPO-201ENST00000307662 COPS6Q7L5N1 327 aa19.52■□□□□ 0.71
SYNPO-201ENST00000307662 EXOC5O00471 708 aa19.52■□□□□ 0.71
SYNPO-201ENST00000307662 MCM7P33993 719 aa19.52■□□□□ 0.71
SYNPO-201ENST00000307662 WDR7Q9Y4E6 1490 aa19.51■□□□□ 0.71
SYNPO-201ENST00000307662 ADAMTS12P58397 1594 aa19.51■□□□□ 0.71
SYNPO-201ENST00000307662 BICD1Q96G01 975 aa19.51■□□□□ 0.71
SYNPO-201ENST00000307662 C6orf50Q9HD87 102 aa19.51■□□□□ 0.71
SYNPO-201ENST00000307662 NLRP12P59046 1061 aa19.51■□□□□ 0.71
SYNPO-201ENST00000307662 PPP1R7Q15435 360 aa19.51■□□□□ 0.71
SYNPO-201ENST00000307662 ANO1Q5XXA6 986 aa19.51■□□□□ 0.71
SYNPO-201ENST00000307662 TRMT1LQ7Z2T5 733 aaKnown RBP19.51■□□□□ 0.71
SYNPO-201ENST00000307662 LINS1Q8NG48 757 aa19.51■□□□□ 0.71
SYNPO-201ENST00000307662 NKIRAS1Q9NYS0 192 aa19.51■□□□□ 0.71
SYNPO-201ENST00000307662 SBNO2Q9Y2G9 1366 aa19.51■□□□□ 0.71
SYNPO-201ENST00000307662 GOLGA6BA6NDN3 693 aa19.51■□□□□ 0.71
SYNPO-201ENST00000307662 AKAP4Q5JQC9 854 aa19.51■□□□□ 0.71
SYNPO-201ENST00000307662 AEBP2Q6ZN18 517 aaPredicted RBP19.51■□□□□ 0.71
SYNPO-201ENST00000307662 ZRANB1Q9UGI0 708 aa19.51■□□□□ 0.71
SYNPO-201ENST00000307662 MTUS1Q9ULD2 1270 aa19.51■□□□□ 0.71
SYNPO-201ENST00000307662 PZPP20742 1482 aa19.51■□□□□ 0.71
SYNPO-201ENST00000307662 COL17A1Q9UMD9 1497 aaPredicted RBP19.51■□□□□ 0.71
SYNPO-201ENST00000307662 ATP5DP30049 168 aa19.51■□□□□ 0.71
SYNPO-201ENST00000307662 UHRF1BP1Q6BDS2 1440 aa19.5■□□□□ 0.71
SYNPO-201ENST00000307662 GNAT2P19087 354 aa19.5■□□□□ 0.71
SYNPO-201ENST00000307662 GSTO1P78417 241 aa19.5■□□□□ 0.71
SYNPO-201ENST00000307662 DTHD1Q6ZMT9 781 aa19.5■□□□□ 0.71
SYNPO-201ENST00000307662 IFT20Q8IY31 132 aa19.5■□□□□ 0.71
SYNPO-201ENST00000307662 LMNTD2Q8IXW0 634 aa19.5■□□□□ 0.71
SYNPO-201ENST00000307662 CCDC63Q8NA47 563 aa19.5■□□□□ 0.71
SYNPO-201ENST00000307662 OTUD7AQ8TE49 926 aaPredicted RBP19.5■□□□□ 0.71
SYNPO-201ENST00000307662 JAKMIP2Q96AA8 810 aa19.5■□□□□ 0.71
SYNPO-201ENST00000307662 KCNH3Q9ULD8 1083 aa19.5■□□□□ 0.71
SYNPO-201ENST00000307662 COMMD10Q9Y6G5 202 aa19.5■□□□□ 0.71
SYNPO-201ENST00000307662 SLC27A2O14975 620 aa19.5■□□□□ 0.71
SYNPO-201ENST00000307662 ALDH3A1P30838 453 aa19.5■□□□□ 0.71
SYNPO-201ENST00000307662 PPP1R2P41236 205 aa19.5■□□□□ 0.71
SYNPO-201ENST00000307662 MTHFSDQ2M296 383 aaKnown RBP19.5■□□□□ 0.71
SYNPO-201ENST00000307662 AOX1Q06278 1338 aa19.5■□□□□ 0.71
SYNPO-201ENST00000307662 BUB1BO60566 1050 aaPredicted RBP19.49■□□□□ 0.71
SYNPO-201ENST00000307662 STMN2Q93045 179 aa19.49■□□□□ 0.71
SYNPO-201ENST00000307662 GIGYF1O75420 1035 aaPredicted RBP19.49■□□□□ 0.71
SYNPO-201ENST00000307662 ZSCAN26Q16670 478 aa19.49■□□□□ 0.71
SYNPO-201ENST00000307662 VPS16Q9H269 839 aa19.49■□□□□ 0.71
SYNPO-201ENST00000307662 SYNCQ9H7C4 482 aa19.49■□□□□ 0.71
SYNPO-201ENST00000307662 HLA-DOAP06340 250 aa19.49■□□□□ 0.71
SYNPO-201ENST00000307662 RILPL1Q5EBL4 403 aa19.49■□□□□ 0.71
SYNPO-201ENST00000307662 CFAP57Q96MR6 1250 aa19.49■□□□□ 0.71
SYNPO-201ENST00000307662 HELLSQ9NRZ9 838 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms