RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 LRRN4CLQ8ND94 238 aa16.92■□□□□ 0.3
PTPN9-201ENST00000306726 ZNF831Q5JPB2 1677 aa16.91■□□□□ 0.3
PTPN9-201ENST00000306726 TRMT44Q8IYL2 757 aaKnown RBP16.91■□□□□ 0.3
PTPN9-201ENST00000306726 CLIC4Q9Y696 253 aa16.91■□□□□ 0.3
PTPN9-201ENST00000306726 ITGB4P16144 1822 aa16.91■□□□□ 0.3
PTPN9-201ENST00000306726 TAF5LO75529 589 aa16.91■□□□□ 0.3
PTPN9-201ENST00000306726 SNRPA1P09661 255 aaKnown RBP16.91■□□□□ 0.3
PTPN9-201ENST00000306726 TTC41PQ6P2S7 1318 aa16.91■□□□□ 0.3
PTPN9-201ENST00000306726 SALL3Q9BXA9 1300 aa16.91■□□□□ 0.3
PTPN9-201ENST00000306726 NDUFA8P51970 172 aa16.91■□□□□ 0.3
PTPN9-201ENST00000306726 TRDNQ13061 729 aa16.91■□□□□ 0.3
PTPN9-201ENST00000306726 LONRF3Q496Y0 759 aa16.91■□□□□ 0.3
PTPN9-201ENST00000306726 TTC39AQ5SRH9 613 aa16.91■□□□□ 0.3
PTPN9-201ENST00000306726 FKBP15Q5T1M5 1219 aa16.91■□□□□ 0.3
PTPN9-201ENST00000306726 LINS1Q8NG48 757 aa16.91■□□□□ 0.3
PTPN9-201ENST00000306726 INCENPQ9NQS7 918 aa16.91■□□□□ 0.3
PTPN9-201ENST00000306726 FBXO38Q6PIJ6 1188 aa16.9■□□□□ 0.3
PTPN9-201ENST00000306726 STAMQ92783 540 aa16.9■□□□□ 0.3
PTPN9-201ENST00000306726 ZNF496Q96IT1 587 aaPredicted RBP16.9■□□□□ 0.3
PTPN9-201ENST00000306726 CLIC6Q96NY7 704 aa16.9■□□□□ 0.3
PTPN9-201ENST00000306726 DESI2Q9BSY9 194 aa16.9■□□□□ 0.3
PTPN9-201ENST00000306726 GNG11P61952 73 aa16.9■□□□□ 0.3
PTPN9-201ENST00000306726 MCMDC2Q4G0Z9 681 aa16.9■□□□□ 0.3
PTPN9-201ENST00000306726 NEK11Q8NG66 645 aa16.9■□□□□ 0.3
PTPN9-201ENST00000306726 HDAC5Q9UQL6 1122 aa16.9■□□□□ 0.3
PTPN9-201ENST00000306726 LAMB4A4D0S4 1761 aa16.9■□□□□ 0.3
PTPN9-201ENST00000306726 KRT222Q8N1A0 295 aa16.9■□□□□ 0.3
PTPN9-201ENST00000306726 CARD6Q9BX69 1037 aa16.9■□□□□ 0.3
PTPN9-201ENST00000306726 GIGYF1O75420 1035 aaPredicted RBP16.89■□□□□ 0.29
PTPN9-201ENST00000306726 RASSF8Q8NHQ8 419 aa16.89■□□□□ 0.29
PTPN9-201ENST00000306726 RABEP2Q9H5N1 569 aa16.89■□□□□ 0.29
PTPN9-201ENST00000306726 EEF2KMTQ96G04 330 aa16.89■□□□□ 0.29
PTPN9-201ENST00000306726 LZTFL1Q9NQ48 299 aa16.89■□□□□ 0.29
PTPN9-201ENST00000306726 PUF60Q9UHX1 559 aaKnown RBP16.89■□□□□ 0.29
PTPN9-201ENST00000306726 POLA2Q14181 598 aa16.89■□□□□ 0.29
PTPN9-201ENST00000306726 MCM6Q14566 821 aa16.89■□□□□ 0.29
PTPN9-201ENST00000306726 KMT5BQ4FZB7 885 aa16.89■□□□□ 0.29
PTPN9-201ENST00000306726 PUS3Q9BZE2 481 aaKnown RBP16.89■□□□□ 0.29
PTPN9-201ENST00000306726 CACNA1FO60840 1977 aa16.88■□□□□ 0.29
PTPN9-201ENST00000306726 LRRC24Q50LG9 513 aa16.88■□□□□ 0.29
PTPN9-201ENST00000306726 UBASH3AP57075 661 aa16.88■□□□□ 0.29
PTPN9-201ENST00000306726 FAM193AP78312 1265 aa16.88■□□□□ 0.29
PTPN9-201ENST00000306726 TNNI3KQ59H18 835 aa16.88■□□□□ 0.29
PTPN9-201ENST00000306726 MRPS27Q92552 414 aaKnown RBP16.88■□□□□ 0.29
PTPN9-201ENST00000306726 FPGT-TNNI3KV9GXZ4 949 aa16.88■□□□□ 0.29
PTPN9-201ENST00000306726 SLU7O95391 586 aaKnown RBP16.88■□□□□ 0.29
PTPN9-201ENST00000306726 ILDR1Q86SU0 546 aaPredicted RBP16.88■□□□□ 0.29
PTPN9-201ENST00000306726 OGFRQ9NZT2 677 aa16.88■□□□□ 0.29
PTPN9-201ENST00000306726 PCDHA7Q9UN72 937 aa16.88■□□□□ 0.29
PTPN9-201ENST00000306726 ANKRD65E5RJM6 399 aa16.87■□□□□ 0.29
PTPN9-201ENST00000306726 ADD1P35611 737 aaKnown RBP16.87■□□□□ 0.29
PTPN9-201ENST00000306726 TRIM29Q14134 588 aa16.87■□□□□ 0.29
PTPN9-201ENST00000306726 PIGBQ92521 554 aa16.87■□□□□ 0.29
PTPN9-201ENST00000306726 NOL10Q9BSC4 688 aaKnown RBP16.87■□□□□ 0.29
PTPN9-201ENST00000306726 ADKP55263 362 aaKnown RBP16.87■□□□□ 0.29
PTPN9-201ENST00000306726 GDAP1L1Q96MZ0 367 aa16.87■□□□□ 0.29
PTPN9-201ENST00000306726 KCPQ6ZWJ8 1503 aa16.87■□□□□ 0.29
PTPN9-201ENST00000306726 A1BGP04217 495 aa16.87■□□□□ 0.29
PTPN9-201ENST00000306726 AFMP43652 599 aa16.87■□□□□ 0.29
PTPN9-201ENST00000306726 KRT32Q14532 448 aa16.87■□□□□ 0.29
PTPN9-201ENST00000306726 PNOCQ13519 176 aa16.86■□□□□ 0.29
PTPN9-201ENST00000306726 TMCO3Q6UWJ1 677 aa16.86■□□□□ 0.29
PTPN9-201ENST00000306726 STOX1Q6ZVD7 989 aa16.86■□□□□ 0.29
PTPN9-201ENST00000306726 FUCA2Q9BTY2 467 aa16.86■□□□□ 0.29
PTPN9-201ENST00000306726 CEP126Q9P2H0 1117 aa16.86■□□□□ 0.29
PTPN9-201ENST00000306726 DENND2AQ9ULE3 1009 aa16.86■□□□□ 0.29
PTPN9-201ENST00000306726 TOP1P11387 765 aaKnown RBP16.86■□□□□ 0.29
PTPN9-201ENST00000306726 OLFM4Q6UX06 510 aa16.86■□□□□ 0.29
PTPN9-201ENST00000306726 PAG1Q9NWQ8 432 aa16.86■□□□□ 0.29
PTPN9-201ENST00000306726 PAXBP1Q9Y5B6 917 aa16.86■□□□□ 0.29
PTPN9-201ENST00000306726 U3KPZ7 1027 aaPredicted RBP16.86■□□□□ 0.29
PTPN9-201ENST00000306726 SNAP23O00161 211 aa16.86■□□□□ 0.29
PTPN9-201ENST00000306726 CERS3Q8IU89 383 aa16.86■□□□□ 0.29
PTPN9-201ENST00000306726 SPTLC3Q9NUV7 552 aa16.86■□□□□ 0.29
PTPN9-201ENST00000306726 FAM170AA1A519 330 aa16.85■□□□□ 0.29
PTPN9-201ENST00000306726 UBE2Q2LH0YL09 131 aa16.85■□□□□ 0.29
PTPN9-201ENST00000306726 IGKV5-2P06315 115 aa16.85■□□□□ 0.29
PTPN9-201ENST00000306726 DHX32Q7L7V1 743 aaKnown RBP16.85■□□□□ 0.29
PTPN9-201ENST00000306726 SPTLC2O15270 562 aa16.85■□□□□ 0.29
PTPN9-201ENST00000306726 GRAMD1CQ8IYS0 662 aa16.85■□□□□ 0.29
PTPN9-201ENST00000306726 PRC1O43663 620 aa16.85■□□□□ 0.29
PTPN9-201ENST00000306726 STARD3NLO95772 234 aa16.85■□□□□ 0.29
PTPN9-201ENST00000306726 SRCAPQ6ZRS2 3230 aa16.85■□□□□ 0.29
PTPN9-201ENST00000306726 IBSPP21815 317 aaPredicted RBP16.84■□□□□ 0.29
PTPN9-201ENST00000306726 GCKRQ14397 625 aa16.84■□□□□ 0.29
PTPN9-201ENST00000306726 FAM89AQ96GI7 184 aa16.84■□□□□ 0.29
PTPN9-201ENST00000306726 CNNM3Q8NE01 707 aa16.84■□□□□ 0.29
PTPN9-201ENST00000306726 ATG3Q9NT62 314 aa16.84■□□□□ 0.29
PTPN9-201ENST00000306726 PDE4CQ08493 712 aa16.84■□□□□ 0.29
PTPN9-201ENST00000306726 CCDC57Q2TAC2 916 aa16.84■□□□□ 0.29
PTPN9-201ENST00000306726 TMEM87AQ8NBN3 555 aa16.84■□□□□ 0.29
PTPN9-201ENST00000306726 GTPBP4Q9BZE4 634 aaKnown RBP16.84■□□□□ 0.29
PTPN9-201ENST00000306726 MAPK8IP1Q9UQF2 711 aa16.84■□□□□ 0.29
PTPN9-201ENST00000306726 BRWD3Q6RI45 1802 aa16.83■□□□□ 0.29
PTPN9-201ENST00000306726 E7EWF7 191 aa16.83■□□□□ 0.29
PTPN9-201ENST00000306726 SYKP43405 635 aa16.83■□□□□ 0.29
PTPN9-201ENST00000306726 LMAN1P49257 510 aa16.83■□□□□ 0.29
PTPN9-201ENST00000306726 FAM160A1Q05DH4 1040 aa16.83■□□□□ 0.29
PTPN9-201ENST00000306726 RESTQ13127 1097 aa16.83■□□□□ 0.29
PTPN9-201ENST00000306726 CNNM1Q9NRU3 951 aa16.83■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms