RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 CCDC148Q8NFR7 591 aa10.74□□□□□ -0.69
PTPRE-202ENST00000306042 SPATA32Q96LK8 384 aa10.74□□□□□ -0.69
PTPRE-202ENST00000306042 C3P01024 1663 aa10.74□□□□□ -0.69
PTPRE-202ENST00000306042 HEATR3Q7Z4Q2 680 aa10.74□□□□□ -0.69
PTPRE-202ENST00000306042 TMEM87AQ8NBN3 555 aa10.74□□□□□ -0.69
PTPRE-202ENST00000306042 ZNF532Q9HCE3 1301 aa10.74□□□□□ -0.69
PTPRE-202ENST00000306042 RTL9Q8NET4 1388 aa10.73□□□□□ -0.69
PTPRE-202ENST00000306042 CD163L1Q9NR16 1453 aa10.73□□□□□ -0.69
PTPRE-202ENST00000306042 PUS3Q9BZE2 481 aaKnown RBP10.73□□□□□ -0.69
PTPRE-202ENST00000306042 COPRSQ9NQ92 184 aa10.73□□□□□ -0.69
PTPRE-202ENST00000306042 RNF181Q9P0P0 153 aa10.73□□□□□ -0.69
PTPRE-202ENST00000306042 TRMT1LQ7Z2T5 733 aaKnown RBP10.73□□□□□ -0.69
PTPRE-202ENST00000306042 SMCR8Q8TEV9 937 aaPredicted RBP10.73□□□□□ -0.69
PTPRE-202ENST00000306042 BRIP1Q9BX63 1249 aa10.73□□□□□ -0.69
PTPRE-202ENST00000306042 RNF123Q5XPI4 1314 aa10.73□□□□□ -0.69
PTPRE-202ENST00000306042 OFD1O75665 1012 aa10.73□□□□□ -0.69
PTPRE-202ENST00000306042 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.73□□□□□ -0.69
PTPRE-202ENST00000306042 NDUFB9Q9Y6M9 179 aa10.73□□□□□ -0.69
PTPRE-202ENST00000306042 IRX3P78415 501 aaPredicted RBP10.73□□□□□ -0.69
PTPRE-202ENST00000306042 CEP57L1Q8IYX8 460 aa10.73□□□□□ -0.69
PTPRE-202ENST00000306042 RRP36Q96EU6 259 aaKnown RBP10.73□□□□□ -0.69
PTPRE-202ENST00000306042 TCEANC2Q96MN5 208 aa10.73□□□□□ -0.69
PTPRE-202ENST00000306042 MAGEC2Q9UBF1 373 aaPredicted RBP10.73□□□□□ -0.69
PTPRE-202ENST00000306042 SEMA3EO15041 775 aa10.72□□□□□ -0.69
PTPRE-202ENST00000306042 CIAO1O76071 339 aa10.72□□□□□ -0.69
PTPRE-202ENST00000306042 MBD3O95983 291 aa10.72□□□□□ -0.69
PTPRE-202ENST00000306042 ATP5JP18859 108 aa10.72□□□□□ -0.69
PTPRE-202ENST00000306042 NAPAP54920 295 aa10.72□□□□□ -0.69
PTPRE-202ENST00000306042 BSDC1Q9NW68 430 aaPredicted RBP10.72□□□□□ -0.69
PTPRE-202ENST00000306042 DNAI2Q9GZS0 605 aa10.72□□□□□ -0.69
PTPRE-202ENST00000306042 AS3MTQ9HBK9 375 aa10.72□□□□□ -0.69
PTPRE-202ENST00000306042 KIF13AQ9H1H9 1805 aa10.72□□□□□ -0.69
PTPRE-202ENST00000306042 PRPF40AO75400 957 aaKnown RBP10.72□□□□□ -0.69
PTPRE-202ENST00000306042 ADGRB1O14514 1584 aa10.71□□□□□ -0.69
PTPRE-202ENST00000306042 PPFIA3O75145 1194 aa10.71□□□□□ -0.69
PTPRE-202ENST00000306042 PRDM1O75626 825 aa10.71□□□□□ -0.69
PTPRE-202ENST00000306042 PARP1P09874 1014 aaKnown RBP10.71□□□□□ -0.69
PTPRE-202ENST00000306042 LINC00116Q8NCU8 138 aa10.71□□□□□ -0.69
PTPRE-202ENST00000306042 TTLL11Q8NHH1 800 aa10.71□□□□□ -0.69
PTPRE-202ENST00000306042 CCDC39Q9UFE4 941 aa10.71□□□□□ -0.69
PTPRE-202ENST00000306042 USP17L3A6NCW0 530 aa10.71□□□□□ -0.69
PTPRE-202ENST00000306042 USP17L4A6NCW7 530 aa10.71□□□□□ -0.69
PTPRE-202ENST00000306042 SPDYE3A6NKU9 549 aa10.71□□□□□ -0.69
PTPRE-202ENST00000306042 SMIM5Q71RC9 77 aa10.71□□□□□ -0.69
PTPRE-202ENST00000306042 USP17L1Q7RTZ2 530 aa10.71□□□□□ -0.69
PTPRE-202ENST00000306042 CLRN2A0PK11 232 aa10.71□□□□□ -0.7
PTPRE-202ENST00000306042 BTDP43251 543 aa10.71□□□□□ -0.7
PTPRE-202ENST00000306042 PHKA1P46020 1223 aa10.71□□□□□ -0.7
PTPRE-202ENST00000306042 DHX8Q14562 1220 aaKnown RBP10.71□□□□□ -0.7
PTPRE-202ENST00000306042 SUPT20HL1Q3ZLR7 823 aa10.71□□□□□ -0.7
PTPRE-202ENST00000306042 CHMLP26374 656 aa10.7□□□□□ -0.7
PTPRE-202ENST00000306042 CCDC129Q6ZRS4 1044 aa10.7□□□□□ -0.7
PTPRE-202ENST00000306042 COA1Q9GZY4 146 aa10.7□□□□□ -0.7
PTPRE-202ENST00000306042 KIAA1210Q9ULL0 1709 aa10.7□□□□□ -0.7
PTPRE-202ENST00000306042 MROH1Q8NDA8 1641 aa10.7□□□□□ -0.7
PTPRE-202ENST00000306042 AOX1Q06278 1338 aa10.7□□□□□ -0.7
PTPRE-202ENST00000306042 Q6ZUG5 572 aa10.7□□□□□ -0.7
PTPRE-202ENST00000306042 FNBP4Q8N3X1 1017 aaPredicted RBP10.7□□□□□ -0.7
PTPRE-202ENST00000306042 ZKSCAN3Q9BRR0 538 aa10.7□□□□□ -0.7
PTPRE-202ENST00000306042 CHST3Q7LGC8 479 aa10.7□□□□□ -0.7
PTPRE-202ENST00000306042 CKAP2LQ8IYA6 745 aa10.7□□□□□ -0.7
PTPRE-202ENST00000306042 EAF2Q96CJ1 260 aaPredicted RBP10.7□□□□□ -0.7
PTPRE-202ENST00000306042 MROH2AA6NES4 1674 aa10.7□□□□□ -0.7
PTPRE-202ENST00000306042 A0A0G2JLW4 131 aa10.7□□□□□ -0.7
PTPRE-202ENST00000306042 CT47A1Q5JQC4 288 aaPredicted RBP10.7□□□□□ -0.7
PTPRE-202ENST00000306042 OTUD7AQ8TE49 926 aaPredicted RBP10.7□□□□□ -0.7
PTPRE-202ENST00000306042 C6orf50Q9HD87 102 aa10.7□□□□□ -0.7
PTPRE-202ENST00000306042 TCP11L1Q9NUJ3 509 aa10.7□□□□□ -0.7
PTPRE-202ENST00000306042 H7C1W4 665 aa10.69□□□□□ -0.7
PTPRE-202ENST00000306042 CHRNA5P30532 468 aa10.69□□□□□ -0.7
PTPRE-202ENST00000306042 CREB3L3Q68CJ9 461 aa10.69□□□□□ -0.7
PTPRE-202ENST00000306042 GPCPD1Q9NPB8 672 aa10.69□□□□□ -0.7
PTPRE-202ENST00000306042 ABT1Q9ULW3 272 aaKnown RBP10.69□□□□□ -0.7
PTPRE-202ENST00000306042 PPLO60437 1756 aa10.69□□□□□ -0.7
PTPRE-202ENST00000306042 SLC1A4P43007 532 aa10.69□□□□□ -0.7
PTPRE-202ENST00000306042 ARPP21Q9UBL0 812 aaPredicted RBP10.69□□□□□ -0.7
PTPRE-202ENST00000306042 ANAPC15P60006 121 aa10.69□□□□□ -0.7
PTPRE-202ENST00000306042 IL27Q8NEV9 243 aa10.69□□□□□ -0.7
PTPRE-202ENST00000306042 GOPCQ9HD26 462 aa10.69□□□□□ -0.7
PTPRE-202ENST00000306042 IBTKQ9P2D0 1353 aaPredicted RBP10.69□□□□□ -0.7
PTPRE-202ENST00000306042 ATP10DQ9P241 1426 aa10.69□□□□□ -0.7
PTPRE-202ENST00000306042 EIF5P55010 431 aaKnown RBP10.69□□□□□ -0.7
PTPRE-202ENST00000306042 PABPC4Q13310 644 aaKnown RBP eCLIP10.69□□□□□ -0.7
PTPRE-202ENST00000306042 SYNE4Q8N205 404 aa10.69□□□□□ -0.7
PTPRE-202ENST00000306042 DACH1Q9UI36 760 aa10.69□□□□□ -0.7
PTPRE-202ENST00000306042 B4E1Z4 1266 aa10.68□□□□□ -0.7
PTPRE-202ENST00000306042 ZBED4O75132 1171 aa10.68□□□□□ -0.7
PTPRE-202ENST00000306042 ITPK1Q13572 414 aa10.68□□□□□ -0.7
PTPRE-202ENST00000306042 DHX32Q7L7V1 743 aaKnown RBP10.68□□□□□ -0.7
PTPRE-202ENST00000306042 PDE6AP16499 860 aa10.68□□□□□ -0.7
PTPRE-202ENST00000306042 NKX1-1Q15270 411 aaPredicted RBP10.68□□□□□ -0.7
PTPRE-202ENST00000306042 ARMC9Q7Z3E5 817 aa10.68□□□□□ -0.7
PTPRE-202ENST00000306042 GPR108Q9NPR9 543 aa10.68□□□□□ -0.7
PTPRE-202ENST00000306042 NBPF26B4DH59 902 aa10.68□□□□□ -0.7
PTPRE-202ENST00000306042 FILIP1LQ4L180 1135 aa10.68□□□□□ -0.7
PTPRE-202ENST00000306042 NBPF10Q6P3W6 841 aaKnown RBP10.68□□□□□ -0.7
PTPRE-202ENST00000306042 NBPF15Q8N660 670 aa10.68□□□□□ -0.7
PTPRE-202ENST00000306042 ALG1Q9BT22 464 aa10.68□□□□□ -0.7
PTPRE-202ENST00000306042 ZNF277Q9NRM2 450 aaPredicted RBP10.68□□□□□ -0.7
PTPRE-202ENST00000306042 CNTNAP4Q9C0A0 1308 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms