RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 LDLRAD1Q5T700 205 aa12.19□□□□□ -0.46
VPS41-201ENST00000265745 ARMC9Q7Z3E5 817 aa12.19□□□□□ -0.46
VPS41-201ENST00000265745 SERPINA10Q9UK55 444 aa12.19□□□□□ -0.46
VPS41-201ENST00000265745 PPP2R3BQ9Y5P8 575 aa12.19□□□□□ -0.46
VPS41-201ENST00000265745 CACNA1FO60840 1977 aa12.18□□□□□ -0.46
VPS41-201ENST00000265745 CLRN2A0PK11 232 aa12.18□□□□□ -0.46
VPS41-201ENST00000265745 FGFR2P21802 821 aa12.18□□□□□ -0.46
VPS41-201ENST00000265745 RBM5P52756 815 aaKnown RBP eCLIP12.18□□□□□ -0.46
VPS41-201ENST00000265745 RARSP54136 660 aaKnown RBP12.18□□□□□ -0.46
VPS41-201ENST00000265745 PRKG1Q13976 671 aa12.18□□□□□ -0.46
VPS41-201ENST00000265745 CAVIN4Q5BKX8 364 aa12.18□□□□□ -0.46
VPS41-201ENST00000265745 VPS37DQ86XT2 251 aa12.18□□□□□ -0.46
VPS41-201ENST00000265745 API5Q9BZZ5 524 aaKnown RBP12.18□□□□□ -0.46
VPS41-201ENST00000265745 TTF2Q9UNY4 1162 aaKnown RBP12.18□□□□□ -0.46
VPS41-201ENST00000265745 EYA2O00167 538 aa12.17□□□□□ -0.46
VPS41-201ENST00000265745 PITPNM1O00562 1244 aa12.17□□□□□ -0.46
VPS41-201ENST00000265745 UBTFL1P0CB47 393 aaPredicted RBP12.17□□□□□ -0.46
VPS41-201ENST00000265745 TM4SF4P48230 202 aa12.17□□□□□ -0.46
VPS41-201ENST00000265745 BCAMP50895 628 aa12.17□□□□□ -0.46
VPS41-201ENST00000265745 PUM3Q15397 648 aaKnown RBP12.17□□□□□ -0.46
VPS41-201ENST00000265745 GRIK5Q16478 980 aa12.17□□□□□ -0.46
VPS41-201ENST00000265745 MAP3K11Q16584 847 aa12.17□□□□□ -0.46
VPS41-201ENST00000265745 SUPT20HL1Q3ZLR7 823 aa12.17□□□□□ -0.46
VPS41-201ENST00000265745 ATG9AQ7Z3C6 839 aa12.17□□□□□ -0.46
VPS41-201ENST00000265745 DZIP1LQ8IYY4 767 aaKnown RBP12.17□□□□□ -0.46
VPS41-201ENST00000265745 ARHGAP45Q92619 1136 aa12.17□□□□□ -0.46
VPS41-201ENST00000265745 MCOLN1Q9GZU1 580 aa12.17□□□□□ -0.46
VPS41-201ENST00000265745 ANGEL1Q9UNK9 670 aaKnown RBP12.17□□□□□ -0.46
VPS41-201ENST00000265745 FZD1Q9UP38 647 aa12.17□□□□□ -0.46
VPS41-201ENST00000265745 IQSEC3Q9UPP2 1182 aaPredicted RBP12.17□□□□□ -0.46
VPS41-201ENST00000265745 MYH3P11055 1940 aa12.17□□□□□ -0.46
VPS41-201ENST00000265745 IFIT1P09914 478 aaKnown RBP12.16□□□□□ -0.46
VPS41-201ENST00000265745 CHAF1AQ13111 956 aaPredicted RBP12.16□□□□□ -0.46
VPS41-201ENST00000265745 RASA3Q14644 834 aa12.16□□□□□ -0.46
VPS41-201ENST00000265745 NBPF12Q5TAG4 269 aaPredicted RBP12.16□□□□□ -0.46
VPS41-201ENST00000265745 MRIQ9BWK5 157 aa12.16□□□□□ -0.46
VPS41-201ENST00000265745 VEZTQ9HBM0 779 aa12.16□□□□□ -0.46
VPS41-201ENST00000265745 ZNF70Q9UC06 446 aaPredicted RBP12.16□□□□□ -0.46
VPS41-201ENST00000265745 KIF16BQ96L93 1317 aa12.15□□□□□ -0.46
VPS41-201ENST00000265745 UNCXA6NJT0 531 aa12.15□□□□□ -0.46
VPS41-201ENST00000265745 PPP1R12BO60237 982 aaPredicted RBP12.15□□□□□ -0.46
VPS41-201ENST00000265745 FRAT2O75474 233 aaPredicted RBP12.15□□□□□ -0.46
VPS41-201ENST00000265745 CRKP46108 304 aa12.15□□□□□ -0.46
VPS41-201ENST00000265745 HDLBPQ00341 1268 aaKnown RBP12.15□□□□□ -0.46
VPS41-201ENST00000265745 MKRN3Q13064 507 aaKnown RBP12.15□□□□□ -0.46
VPS41-201ENST00000265745 DGKZQ13574 1117 aa12.15□□□□□ -0.46
VPS41-201ENST00000265745 SPRYD7Q5W111 196 aa12.15□□□□□ -0.46
VPS41-201ENST00000265745 TBC1D22AQ8WUA7 517 aa12.15□□□□□ -0.46
VPS41-201ENST00000265745 LPIN2Q92539 896 aa12.15□□□□□ -0.46
VPS41-201ENST00000265745 SLC10A4Q96EP9 437 aa12.15□□□□□ -0.46
VPS41-201ENST00000265745 TDRD3Q9H7E2 651 aaKnown RBP12.15□□□□□ -0.46
VPS41-201ENST00000265745 HDAC5Q9UQL6 1122 aa12.15□□□□□ -0.46
VPS41-201ENST00000265745 POLR2AP24928 1970 aaKnown RBP12.15□□□□□ -0.46
VPS41-201ENST00000265745 CCDC85CA6NKD9 419 aa12.14□□□□□ -0.47
VPS41-201ENST00000265745 USP2O75604 605 aaPredicted RBP12.14□□□□□ -0.47
VPS41-201ENST00000265745 CIAO1O76071 339 aa12.14□□□□□ -0.47
VPS41-201ENST00000265745 TNFAIP1Q13829 316 aa12.14□□□□□ -0.47
VPS41-201ENST00000265745 INTS3Q68E01 1043 aaKnown RBP12.14□□□□□ -0.47
VPS41-201ENST00000265745 TEPSINQ96N21 525 aa12.14□□□□□ -0.47
VPS41-201ENST00000265745 MEIS3Q99687 375 aa12.14□□□□□ -0.47
VPS41-201ENST00000265745 LRRFIP2Q9Y608 721 aaKnown RBP12.14□□□□□ -0.47
VPS41-201ENST00000265745 PAPPA2Q9BXP8 1791 aa12.14□□□□□ -0.47
VPS41-201ENST00000265745 COL1A1P02452 1464 aaPredicted RBP12.14□□□□□ -0.47
VPS41-201ENST00000265745 PSME4Q14997 1843 aa12.14□□□□□ -0.47
VPS41-201ENST00000265745 TBC1D8O95759 1140 aa12.13□□□□□ -0.47
VPS41-201ENST00000265745 SLC5A1P13866 664 aa12.13□□□□□ -0.47
VPS41-201ENST00000265745 SREBF2Q12772 1141 aa12.13□□□□□ -0.47
VPS41-201ENST00000265745 CLMNQ96JQ2 1002 aa12.13□□□□□ -0.47
VPS41-201ENST00000265745 SIL1Q9H173 461 aa12.13□□□□□ -0.47
VPS41-201ENST00000265745 CEP126Q9P2H0 1117 aa12.13□□□□□ -0.47
VPS41-201ENST00000265745 SUGT1Q9Y2Z0 365 aa12.13□□□□□ -0.47
VPS41-201ENST00000265745 SPEF2Q9C093 1822 aa12.12□□□□□ -0.47
VPS41-201ENST00000265745 TCP10L2B9ZVM9 353 aa12.12□□□□□ -0.47
VPS41-201ENST00000265745 IPO8O15397 1037 aaKnown RBP12.12□□□□□ -0.47
VPS41-201ENST00000265745 ZBTB48P10074 688 aaPredicted RBP12.12□□□□□ -0.47
VPS41-201ENST00000265745 IL15P40933 162 aaPredicted RBP12.12□□□□□ -0.47
VPS41-201ENST00000265745 IREB2P48200 963 aaKnown RBP12.12□□□□□ -0.47
VPS41-201ENST00000265745 INHBEP58166 350 aa12.12□□□□□ -0.47
VPS41-201ENST00000265745 APOBEC3HQ6NTF7 200 aaKnown RBP12.12□□□□□ -0.47
VPS41-201ENST00000265745 CDAN1Q8IWY9 1227 aa12.12□□□□□ -0.47
VPS41-201ENST00000265745 TEKT1Q969V4 418 aa12.12□□□□□ -0.47
VPS41-201ENST00000265745 ZDHHC15Q96MV8 337 aa12.12□□□□□ -0.47
VPS41-201ENST00000265745 TMEM39BQ9GZU3 492 aa12.12□□□□□ -0.47
VPS41-201ENST00000265745 COPRSQ9NQ92 184 aa12.12□□□□□ -0.47
VPS41-201ENST00000265745 SSC5DA1L4H1 1573 aa12.11□□□□□ -0.47
VPS41-201ENST00000265745 MANSC4A6NHS7 340 aaPredicted RBP12.11□□□□□ -0.47
VPS41-201ENST00000265745 RGS19P49795 217 aa12.11□□□□□ -0.47
VPS41-201ENST00000265745 ATP2B3Q16720 1220 aa12.11□□□□□ -0.47
VPS41-201ENST00000265745 NOM1Q5C9Z4 860 aaKnown RBP12.11□□□□□ -0.47
VPS41-201ENST00000265745 HHIPL2Q6UWX4 724 aa12.11□□□□□ -0.47
VPS41-201ENST00000265745 CTU1Q7Z7A3 348 aaKnown RBP12.11□□□□□ -0.47
VPS41-201ENST00000265745 WDR66Q8TBY9 1149 aa12.11□□□□□ -0.47
VPS41-201ENST00000265745 ZNF296Q8WUU4 475 aaPredicted RBP12.11□□□□□ -0.47
VPS41-201ENST00000265745 WNK4Q96J92 1243 aa12.11□□□□□ -0.47
VPS41-201ENST00000265745 CFHR5Q9BXR6 569 aa12.11□□□□□ -0.47
VPS41-201ENST00000265745 R3HDMLQ9H3Y0 253 aa12.11□□□□□ -0.47
VPS41-201ENST00000265745 PA2G4Q9UQ80 394 aaKnown RBP12.11□□□□□ -0.47
VPS41-201ENST00000265745 ZNF646O15015 1829 aaPredicted RBP12.11□□□□□ -0.47
VPS41-201ENST00000265745 GPR25O00155 361 aa12.1□□□□□ -0.47
VPS41-201ENST00000265745 BCAR3O75815 825 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms