RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 RGMBQ6NW40 437 aa28.39■■■□□ 2.14
LSM4-201ENST00000252816 MYH13Q9UKX3 1938 aa28.39■■■□□ 2.13
LSM4-201ENST00000252816 PAPPA2Q9BXP8 1791 aa28.38■■■□□ 2.13
LSM4-201ENST00000252816 FKBP1BP68106 108 aa28.38■■■□□ 2.13
LSM4-201ENST00000252816 NEUROD6Q96NK8 337 aa28.38■■■□□ 2.13
LSM4-201ENST00000252816 TDRD3Q9H7E2 651 aaKnown RBP28.38■■■□□ 2.13
LSM4-201ENST00000252816 ZNF70Q9UC06 446 aaPredicted RBP28.38■■■□□ 2.13
LSM4-201ENST00000252816 DENND2AQ9ULE3 1009 aa28.38■■■□□ 2.13
LSM4-201ENST00000252816 SEMA3EO15041 775 aa28.37■■■□□ 2.13
LSM4-201ENST00000252816 ZBTB22O15209 634 aa28.37■■■□□ 2.13
LSM4-201ENST00000252816 SURF6O75683 361 aaKnown RBP28.37■■■□□ 2.13
LSM4-201ENST00000252816 MAP2K2P36507 400 aa28.37■■■□□ 2.13
LSM4-201ENST00000252816 C20orf194Q5TEA3 1177 aa28.37■■■□□ 2.13
LSM4-201ENST00000252816 TEKT1Q969V4 418 aa28.37■■■□□ 2.13
LSM4-201ENST00000252816 NOP58Q9Y2X3 529 aaKnown RBP28.37■■■□□ 2.13
LSM4-201ENST00000252816 FAM155AB1AL88 458 aaPredicted RBP28.36■■■□□ 2.13
LSM4-201ENST00000252816 FOXN1O15353 648 aa28.36■■■□□ 2.13
LSM4-201ENST00000252816 RASGRF1Q13972 1273 aa28.36■■■□□ 2.13
LSM4-201ENST00000252816 ZIC5Q96T25 663 aa28.36■■■□□ 2.13
LSM4-201ENST00000252816 MRIQ9BWK5 157 aa28.36■■■□□ 2.13
LSM4-201ENST00000252816 UBE2Q2LH0YL09 131 aa28.35■■■□□ 2.13
LSM4-201ENST00000252816 PRDX5P30044 214 aa28.35■■■□□ 2.13
LSM4-201ENST00000252816 ZNF157P51786 506 aaPredicted RBP28.35■■■□□ 2.13
LSM4-201ENST00000252816 MAP2K1Q02750 393 aaPredicted RBP28.35■■■□□ 2.13
LSM4-201ENST00000252816 OS9Q13438 667 aaPredicted RBP28.35■■■□□ 2.13
LSM4-201ENST00000252816 ZDHHC15Q96MV8 337 aa28.35■■■□□ 2.13
LSM4-201ENST00000252816 DDX19BQ9UMR2 479 aa28.35■■■□□ 2.13
LSM4-201ENST00000252816 MAST3O60307 1309 aa28.35■■■□□ 2.13
LSM4-201ENST00000252816 NF2P35240 595 aa28.34■■■□□ 2.13
LSM4-201ENST00000252816 ZBTB40Q9NUA8 1239 aa28.34■■■□□ 2.13
LSM4-201ENST00000252816 PPP2R3BQ9Y5P8 575 aa28.34■■■□□ 2.13
LSM4-201ENST00000252816 SALL1Q9NSC2 1324 aa28.34■■■□□ 2.13
LSM4-201ENST00000252816 TTLL12Q14166 644 aaPredicted RBP28.33■■■□□ 2.13
LSM4-201ENST00000252816 RASA3Q14644 834 aa28.33■■■□□ 2.13
LSM4-201ENST00000252816 APOBEC3HQ6NTF7 200 aaKnown RBP28.33■■■□□ 2.13
LSM4-201ENST00000252816 AIDAQ96BJ3 306 aa28.33■■■□□ 2.13
LSM4-201ENST00000252816 SSC5DA1L4H1 1573 aa28.33■■■□□ 2.12
LSM4-201ENST00000252816 NOGQ13253 232 aa28.32■■■□□ 2.12
LSM4-201ENST00000252816 PRKG1Q13976 671 aa28.32■■■□□ 2.12
LSM4-201ENST00000252816 HHIPL2Q6UWX4 724 aa28.32■■■□□ 2.12
LSM4-201ENST00000252816 CCDC102AQ96A19 550 aa28.32■■■□□ 2.12
LSM4-201ENST00000252816 GPR108Q9NPR9 543 aa28.32■■■□□ 2.12
LSM4-201ENST00000252816 FZD1Q9UP38 647 aa28.32■■■□□ 2.12
LSM4-201ENST00000252816 LDHBP07195 334 aaKnown RBP28.31■■■□□ 2.12
LSM4-201ENST00000252816 PDE3AQ14432 1141 aa28.31■■■□□ 2.12
LSM4-201ENST00000252816 DIXDC1Q155Q3 683 aa28.31■■■□□ 2.12
LSM4-201ENST00000252816 TNNI3KQ59H18 835 aa28.31■■■□□ 2.12
LSM4-201ENST00000252816 NBPF12Q5TAG4 269 aaPredicted RBP28.31■■■□□ 2.12
LSM4-201ENST00000252816 YTHDC1Q96MU7 727 aaKnown RBP28.31■■■□□ 2.12
LSM4-201ENST00000252816 FPGT-TNNI3KV9GXZ4 949 aa28.31■■■□□ 2.12
LSM4-201ENST00000252816 PDS5AQ29RF7 1337 aaKnown RBP28.31■■■□□ 2.12
LSM4-201ENST00000252816 TCP10L2B9ZVM9 353 aa28.3■■■□□ 2.12
LSM4-201ENST00000252816 SLC10A3P09131 477 aa28.3■■■□□ 2.12
LSM4-201ENST00000252816 GORABQ5T7V8 394 aa28.3■■■□□ 2.12
LSM4-201ENST00000252816 RASAL3Q86YV0 1011 aa28.3■■■□□ 2.12
LSM4-201ENST00000252816 CACNB3P54284 484 aa28.29■■■□□ 2.12
LSM4-201ENST00000252816 TNFAIP1Q13829 316 aa28.29■■■□□ 2.12
LSM4-201ENST00000252816 COL13A1Q5TAT6 717 aaPredicted RBP28.29■■■□□ 2.12
LSM4-201ENST00000252816 CDAN1Q8IWY9 1227 aa28.29■■■□□ 2.12
LSM4-201ENST00000252816 GOLGA6L2Q8N9W4 650 aaPredicted RBP28.29■■■□□ 2.12
LSM4-201ENST00000252816 DAGLAQ9Y4D2 1042 aa28.29■■■□□ 2.12
LSM4-201ENST00000252816 PI16Q6UXB8 463 aa28.28■■■□□ 2.12
LSM4-201ENST00000252816 ARMC9Q7Z3E5 817 aa28.28■■■□□ 2.12
LSM4-201ENST00000252816 SIRT2Q8IXJ6 389 aa28.28■■■□□ 2.12
LSM4-201ENST00000252816 TEPSINQ96N21 525 aa28.28■■■□□ 2.12
LSM4-201ENST00000252816 DBNDD2Q9BQY9 259 aa28.28■■■□□ 2.12
LSM4-201ENST00000252816 HMG20BQ9P0W2 317 aa28.28■■■□□ 2.12
LSM4-201ENST00000252816 ANGEL1Q9UNK9 670 aaKnown RBP28.28■■■□□ 2.12
LSM4-201ENST00000252816 EXOC6BQ9Y2D4 811 aa28.28■■■□□ 2.12
LSM4-201ENST00000252816 ARID4AP29374 1257 aaPredicted RBP28.27■■■□□ 2.12
LSM4-201ENST00000252816 CTCFP49711 727 aaPredicted RBP28.27■■■□□ 2.12
LSM4-201ENST00000252816 SUPT20HL1Q3ZLR7 823 aa28.27■■■□□ 2.12
LSM4-201ENST00000252816 ZGPATQ8N5A5 531 aaKnown RBP28.27■■■□□ 2.12
LSM4-201ENST00000252816 KIF23Q02241 960 aaPredicted RBP28.26■■■□□ 2.11
LSM4-201ENST00000252816 LDLRAD1Q5T700 205 aa28.26■■■□□ 2.11
LSM4-201ENST00000252816 RPAP2Q8IXW5 612 aaPredicted RBP28.26■■■□□ 2.11
LSM4-201ENST00000252816 TMEM39BQ9GZU3 492 aa28.26■■■□□ 2.11
LSM4-201ENST00000252816 ABCF2Q9UG63 623 aa28.26■■■□□ 2.11
LSM4-201ENST00000252816 HSPA8P11142 646 aaKnown RBP28.25■■■□□ 2.11
LSM4-201ENST00000252816 MCAMP43121 646 aa28.25■■■□□ 2.11
LSM4-201ENST00000252816 SPATA5Q8NB90 893 aa28.25■■■□□ 2.11
LSM4-201ENST00000252816 BEGAINQ9BUH8 593 aa28.25■■■□□ 2.11
LSM4-201ENST00000252816 TNNI2P48788 182 aa28.24■■■□□ 2.11
LSM4-201ENST00000252816 MAP3K11Q16584 847 aa28.24■■■□□ 2.11
LSM4-201ENST00000252816 EAF2Q96CJ1 260 aaPredicted RBP28.24■■■□□ 2.11
LSM4-201ENST00000252816 CHMP4BQ9H444 224 aaKnown RBP28.24■■■□□ 2.11
LSM4-201ENST00000252816 PPP1R12BO60237 982 aaPredicted RBP28.23■■■□□ 2.11
LSM4-201ENST00000252816 UQCRFS1P1P0C7P4 283 aa28.23■■■□□ 2.11
LSM4-201ENST00000252816 LBX1P52954 281 aa28.23■■■□□ 2.11
LSM4-201ENST00000252816 FKBP1CQ5VVH2 108 aa28.23■■■□□ 2.11
LSM4-201ENST00000252816 CDC42EP5Q6NZY7 148 aa28.23■■■□□ 2.11
LSM4-201ENST00000252816 TLR7Q9NYK1 1049 aaKnown RBP28.23■■■□□ 2.11
LSM4-201ENST00000252816 TMOD2Q9NZR1 351 aa28.23■■■□□ 2.11
LSM4-201ENST00000252816 DBNLQ9UJU6 430 aaKnown RBP28.23■■■□□ 2.11
LSM4-201ENST00000252816 TBC1D9Q6ZT07 1266 aa28.22■■■□□ 2.11
LSM4-201ENST00000252816 CCDC8Q9H0W5 538 aaPredicted RBP28.22■■■□□ 2.11
LSM4-201ENST00000252816 USP2O75604 605 aaPredicted RBP28.21■■■□□ 2.11
LSM4-201ENST00000252816 TTC39AQ5SRH9 613 aa28.21■■■□□ 2.11
LSM4-201ENST00000252816 SPTY2D1Q68D10 685 aaPredicted RBP28.21■■■□□ 2.11
LSM4-201ENST00000252816 FAM83AQ86UY5 434 aa28.21■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms