RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 PHACTR2O75167 634 aa13.82□□□□□ -0.2
USHBP1-201ENST00000252597 ZAP70P43403 619 aa13.82□□□□□ -0.2
USHBP1-201ENST00000252597 EVCP57679 992 aa13.82□□□□□ -0.2
USHBP1-201ENST00000252597 MCM6Q14566 821 aa13.82□□□□□ -0.2
USHBP1-201ENST00000252597 ANO1Q5XXA6 986 aa13.82□□□□□ -0.2
USHBP1-201ENST00000252597 STAMQ92783 540 aa13.82□□□□□ -0.2
USHBP1-201ENST00000252597 CCDC66A2RUB6 948 aa13.81□□□□□ -0.2
USHBP1-201ENST00000252597 FDPSP14324 419 aaKnown RBP13.81□□□□□ -0.2
USHBP1-201ENST00000252597 TNNT3P45378 269 aaPredicted RBP13.81□□□□□ -0.2
USHBP1-201ENST00000252597 BMS1Q14692 1282 aaKnown RBP13.81□□□□□ -0.2
USHBP1-201ENST00000252597 FMR1NBQ8N0W7 255 aaPredicted RBP13.81□□□□□ -0.2
USHBP1-201ENST00000252597 SYNE4Q8N205 404 aa13.81□□□□□ -0.2
USHBP1-201ENST00000252597 LINC00301Q8NCQ3 95 aa13.81□□□□□ -0.2
USHBP1-201ENST00000252597 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.81□□□□□ -0.2
USHBP1-201ENST00000252597 SRCAPQ6ZRS2 3230 aa13.81□□□□□ -0.2
USHBP1-201ENST00000252597 DHX16O60231 1041 aaKnown RBP13.81□□□□□ -0.2
USHBP1-201ENST00000252597 CAVIN2O95810 425 aa13.81□□□□□ -0.2
USHBP1-201ENST00000252597 SLFN14P0C7P3 912 aa13.81□□□□□ -0.2
USHBP1-201ENST00000252597 PDIA4P13667 645 aaKnown RBP13.81□□□□□ -0.2
USHBP1-201ENST00000252597 AFMP43652 599 aa13.81□□□□□ -0.2
USHBP1-201ENST00000252597 ADALQ6DHV7 355 aa13.81□□□□□ -0.2
USHBP1-201ENST00000252597 ILDR1Q86SU0 546 aaPredicted RBP13.81□□□□□ -0.2
USHBP1-201ENST00000252597 KCNB2Q92953 911 aa13.81□□□□□ -0.2
USHBP1-201ENST00000252597 COPRSQ9NQ92 184 aa13.81□□□□□ -0.2
USHBP1-201ENST00000252597 STRN4Q9NRL3 753 aa13.81□□□□□ -0.2
USHBP1-201ENST00000252597 IQSEC3Q9UPP2 1182 aaPredicted RBP13.81□□□□□ -0.2
USHBP1-201ENST00000252597 METAP2P50579 478 aaKnown RBP eCLIP13.8□□□□□ -0.2
USHBP1-201ENST00000252597 LONRF3Q496Y0 759 aa13.8□□□□□ -0.2
USHBP1-201ENST00000252597 CPLX2Q6PUV4 134 aaKnown RBP13.8□□□□□ -0.2
USHBP1-201ENST00000252597 NBPF11Q86T75 865 aa13.8□□□□□ -0.2
USHBP1-201ENST00000252597 KCNG4Q8TDN1 519 aa13.8□□□□□ -0.2
USHBP1-201ENST00000252597 IRX2Q9BZI1 471 aaPredicted RBP13.8□□□□□ -0.2
USHBP1-201ENST00000252597 CNNM1Q9NRU3 951 aa13.8□□□□□ -0.2
USHBP1-201ENST00000252597 KCNJ14Q9UNX9 436 aa13.8□□□□□ -0.2
USHBP1-201ENST00000252597 C1orf167Q5SNV9 1468 aa13.8□□□□□ -0.2
USHBP1-201ENST00000252597 SNAP23O00161 211 aa13.8□□□□□ -0.2
USHBP1-201ENST00000252597 SCARF1Q14162 830 aa13.8□□□□□ -0.2
USHBP1-201ENST00000252597 HINFPQ9BQA5 517 aa13.8□□□□□ -0.2
USHBP1-201ENST00000252597 PUS7LQ9H0K6 701 aaKnown RBP13.8□□□□□ -0.2
USHBP1-201ENST00000252597 SLC52A2Q9HAB3 445 aa13.8□□□□□ -0.2
USHBP1-201ENST00000252597 MARF1Q9Y4F3 1742 aaKnown RBP13.8□□□□□ -0.2
USHBP1-201ENST00000252597 WDHD1O75717 1129 aaPredicted RBP13.8□□□□□ -0.2
USHBP1-201ENST00000252597 METTL24Q5JXM2 366 aa13.8□□□□□ -0.2
USHBP1-201ENST00000252597 SLC9C2Q5TAH2 1124 aa13.8□□□□□ -0.2
USHBP1-201ENST00000252597 CCDC12Q8WUD4 166 aaPredicted RBP13.8□□□□□ -0.2
USHBP1-201ENST00000252597 IL17RAQ96F46 866 aa13.8□□□□□ -0.2
USHBP1-201ENST00000252597 SLC4A8Q2Y0W8 1093 aa13.79□□□□□ -0.2
USHBP1-201ENST00000252597 ARHGEF25Q86VW2 580 aa13.79□□□□□ -0.2
USHBP1-201ENST00000252597 GPIHBP1Q8IV16 184 aa13.79□□□□□ -0.2
USHBP1-201ENST00000252597 CCDC150Q8NCX0 1101 aa13.79□□□□□ -0.2
USHBP1-201ENST00000252597 SENP2Q9HC62 589 aa13.79□□□□□ -0.2
USHBP1-201ENST00000252597 CWC25Q9NXE8 425 aaPredicted RBP13.79□□□□□ -0.2
USHBP1-201ENST00000252597 CASQ1P31415 396 aa13.79□□□□□ -0.2
USHBP1-201ENST00000252597 NYAP1Q6ZVC0 841 aa13.79□□□□□ -0.2
USHBP1-201ENST00000252597 VPS37DQ86XT2 251 aa13.79□□□□□ -0.2
USHBP1-201ENST00000252597 CEMIPQ8WUJ3 1361 aa13.79□□□□□ -0.2
USHBP1-201ENST00000252597 CASP1P29466 404 aa13.79□□□□□ -0.2
USHBP1-201ENST00000252597 ENGASEQ8NFI3 743 aa13.79□□□□□ -0.2
USHBP1-201ENST00000252597 FBXO18Q8NFZ0 1043 aa13.79□□□□□ -0.2
USHBP1-201ENST00000252597 NCOA7Q8NI08 942 aa13.79□□□□□ -0.2
USHBP1-201ENST00000252597 SMARCC2Q8TAQ2 1214 aa13.79□□□□□ -0.2
USHBP1-201ENST00000252597 ZNF446Q9NWS9 450 aa13.79□□□□□ -0.2
USHBP1-201ENST00000252597 LMAN1P49257 510 aa13.78□□□□□ -0.2
USHBP1-201ENST00000252597 ETF1P62495 437 aaKnown RBP13.78□□□□□ -0.2
USHBP1-201ENST00000252597 RBM43Q6ZSC3 357 aaKnown RBP13.78□□□□□ -0.2
USHBP1-201ENST00000252597 LLPHQ9BRT6 129 aaKnown RBP13.78□□□□□ -0.2
USHBP1-201ENST00000252597 LTN1O94822 1766 aa13.78□□□□□ -0.2
USHBP1-201ENST00000252597 GPAA1O43292 621 aa13.78□□□□□ -0.2
USHBP1-201ENST00000252597 NLRP12P59046 1061 aa13.78□□□□□ -0.2
USHBP1-201ENST00000252597 GABPB1Q06547 395 aaPredicted RBP13.78□□□□□ -0.2
USHBP1-201ENST00000252597 GOLGA8AA7E2F4 631 aa13.77□□□□□ -0.2
USHBP1-201ENST00000252597 IARSP41252 1262 aaKnown RBP13.77□□□□□ -0.2
USHBP1-201ENST00000252597 KRT40Q6A162 431 aa13.77□□□□□ -0.2
USHBP1-201ENST00000252597 SARM1Q6SZW1 724 aa13.77□□□□□ -0.2
USHBP1-201ENST00000252597 IFNL2Q8IZJ0 200 aa13.77□□□□□ -0.2
USHBP1-201ENST00000252597 XAGE2Q96GT9 111 aa13.77□□□□□ -0.2
USHBP1-201ENST00000252597 TIGD1Q96MW7 591 aa13.77□□□□□ -0.2
USHBP1-201ENST00000252597 PCDHA5Q9Y5H7 936 aa13.77□□□□□ -0.2
USHBP1-201ENST00000252597 MORC2Q9Y6X9 1032 aaPredicted RBP13.77□□□□□ -0.2
USHBP1-201ENST00000252597 MYL5Q02045 173 aa13.77□□□□□ -0.21
USHBP1-201ENST00000252597 IFIT3O14879 490 aaKnown RBP13.77□□□□□ -0.21
USHBP1-201ENST00000252597 RHOXF2BP0C7M4 288 aa13.77□□□□□ -0.21
USHBP1-201ENST00000252597 TMEM67Q5HYA8 995 aa13.77□□□□□ -0.21
USHBP1-201ENST00000252597 USPL1Q5W0Q7 1092 aa13.77□□□□□ -0.21
USHBP1-201ENST00000252597 CCDC102BQ68D86 513 aa13.77□□□□□ -0.21
USHBP1-201ENST00000252597 LDHAL6AQ6ZMR3 332 aa13.77□□□□□ -0.21
USHBP1-201ENST00000252597 EEF2KMTQ96G04 330 aa13.77□□□□□ -0.21
USHBP1-201ENST00000252597 RHOXF2Q9BQY4 288 aa13.77□□□□□ -0.21
USHBP1-201ENST00000252597 PXDNQ92626 1479 aa13.77□□□□□ -0.21
USHBP1-201ENST00000252597 NWD1Q149M9 1564 aa13.76□□□□□ -0.21
USHBP1-201ENST00000252597 EYA2O00167 538 aa13.76□□□□□ -0.21
USHBP1-201ENST00000252597 POLR2DO15514 142 aaKnown RBP13.76□□□□□ -0.21
USHBP1-201ENST00000252597 PNMA6AP0CW24 399 aaPredicted RBP13.76□□□□□ -0.21
USHBP1-201ENST00000252597 CDC25BP30305 580 aa13.76□□□□□ -0.21
USHBP1-201ENST00000252597 RTEL1Q9NZ71 1219 aa13.76□□□□□ -0.21
USHBP1-201ENST00000252597 NFAT5O94916 1531 aa13.76□□□□□ -0.21
USHBP1-201ENST00000252597 KIF2AO00139 706 aaPredicted RBP13.76□□□□□ -0.21
USHBP1-201ENST00000252597 TFRCP02786 760 aaKnown RBP13.76□□□□□ -0.21
USHBP1-201ENST00000252597 RFX5P48382 616 aaPredicted RBP13.76□□□□□ -0.21
USHBP1-201ENST00000252597 CTDSPL2Q05D32 466 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms