RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 RXRAP19793 462 aa14.38□□□□□ -0.11
NUP88-201ENST00000225696 KIF23Q02241 960 aaPredicted RBP14.38□□□□□ -0.11
NUP88-201ENST00000225696 ZRSR1Q15695 479 aaKnown RBP14.38□□□□□ -0.11
NUP88-201ENST00000225696 ARHGAP29Q52LW3 1261 aa14.38□□□□□ -0.11
NUP88-201ENST00000225696 ANO1Q5XXA6 986 aa14.38□□□□□ -0.11
NUP88-201ENST00000225696 TRIM65Q6PJ69 517 aa14.38□□□□□ -0.11
NUP88-201ENST00000225696 CCDC150Q8NCX0 1101 aa14.38□□□□□ -0.11
NUP88-201ENST00000225696 PLBD2Q8NHP8 589 aa14.38□□□□□ -0.11
NUP88-201ENST00000225696 PUS7LQ9H0K6 701 aaKnown RBP14.38□□□□□ -0.11
NUP88-201ENST00000225696 UBE2Q2LH0YL09 131 aa14.37□□□□□ -0.11
NUP88-201ENST00000225696 YEATS4O95619 227 aa14.37□□□□□ -0.11
NUP88-201ENST00000225696 PNOCQ13519 176 aa14.37□□□□□ -0.11
NUP88-201ENST00000225696 HSP90AA4PQ58FG1 418 aa14.37□□□□□ -0.11
NUP88-201ENST00000225696 MB21D2Q8IYB1 491 aaPredicted RBP14.37□□□□□ -0.11
NUP88-201ENST00000225696 CAMTA1Q9Y6Y1 1673 aa14.37□□□□□ -0.11
NUP88-201ENST00000225696 SCN11AQ9UI33 1791 aa14.37□□□□□ -0.11
NUP88-201ENST00000225696 WASHC4Q2M389 1173 aa14.37□□□□□ -0.11
NUP88-201ENST00000225696 HOMER1Q86YM7 354 aa14.37□□□□□ -0.11
NUP88-201ENST00000225696 DDX17Q92841 729 aaKnown RBP14.37□□□□□ -0.11
NUP88-201ENST00000225696 CLIC6Q96NY7 704 aa14.37□□□□□ -0.11
NUP88-201ENST00000225696 CCDC85AQ96PX6 553 aaPredicted RBP14.37□□□□□ -0.11
NUP88-201ENST00000225696 SENP2Q9HC62 589 aa14.37□□□□□ -0.11
NUP88-201ENST00000225696 KIF2AO00139 706 aaPredicted RBP14.36□□□□□ -0.11
NUP88-201ENST00000225696 EYA2O00167 538 aa14.36□□□□□ -0.11
NUP88-201ENST00000225696 CMA1P23946 247 aa14.36□□□□□ -0.11
NUP88-201ENST00000225696 ETF1P62495 437 aaKnown RBP14.36□□□□□ -0.11
NUP88-201ENST00000225696 SHC4Q6S5L8 630 aa14.36□□□□□ -0.11
NUP88-201ENST00000225696 KRT28Q7Z3Y7 464 aa14.36□□□□□ -0.11
NUP88-201ENST00000225696 FOXP4Q8IVH2 680 aaPredicted RBP14.36□□□□□ -0.11
NUP88-201ENST00000225696 KDM4FA0A1W2PPD8 638 aa14.36□□□□□ -0.11
NUP88-201ENST00000225696 IL15P40933 162 aaPredicted RBP14.36□□□□□ -0.11
NUP88-201ENST00000225696 PLA2G4AP47712 749 aa14.36□□□□□ -0.11
NUP88-201ENST00000225696 SYNE3Q6ZMZ3 975 aa14.36□□□□□ -0.11
NUP88-201ENST00000225696 FBXL16Q8N461 479 aa14.36□□□□□ -0.11
NUP88-201ENST00000225696 UTP14AQ9BVJ6 771 aaKnown RBP14.36□□□□□ -0.11
NUP88-201ENST00000225696 NBPF3Q9H094 633 aa14.36□□□□□ -0.11
NUP88-201ENST00000225696 ZBTB3Q9H5J0 574 aa14.36□□□□□ -0.11
NUP88-201ENST00000225696 SEC31AO94979 1220 aaKnown RBP14.35□□□□□ -0.11
NUP88-201ENST00000225696 A1BGP04217 495 aa14.35□□□□□ -0.11
NUP88-201ENST00000225696 PNMA6AP0CW24 399 aaPredicted RBP14.35□□□□□ -0.11
NUP88-201ENST00000225696 TATP17735 454 aaPredicted RBP14.35□□□□□ -0.11
NUP88-201ENST00000225696 CDC27P30260 824 aa14.35□□□□□ -0.11
NUP88-201ENST00000225696 REXO1L1PQ8IX06 675 aa14.35□□□□□ -0.11
NUP88-201ENST00000225696 IFNL2Q8IZJ0 200 aa14.35□□□□□ -0.11
NUP88-201ENST00000225696 FAM177A1Q8N128 213 aaPredicted RBP14.35□□□□□ -0.11
NUP88-201ENST00000225696 TMX1Q9H3N1 280 aa14.35□□□□□ -0.11
NUP88-201ENST00000225696 INTS13Q9NVM9 706 aa14.35□□□□□ -0.11
NUP88-201ENST00000225696 CPLX1O14810 134 aa14.34□□□□□ -0.11
NUP88-201ENST00000225696 FOXN1O15353 648 aa14.34□□□□□ -0.11
NUP88-201ENST00000225696 BMP6P22004 513 aa14.34□□□□□ -0.11
NUP88-201ENST00000225696 UBASH3AP57075 661 aa14.34□□□□□ -0.11
NUP88-201ENST00000225696 SLC39A14Q15043 492 aa14.34□□□□□ -0.11
NUP88-201ENST00000225696 CABLES1Q8TDN4 633 aa14.34□□□□□ -0.11
NUP88-201ENST00000225696 GPR108Q9NPR9 543 aa14.34□□□□□ -0.11
NUP88-201ENST00000225696 SYKP43405 635 aa14.34□□□□□ -0.11
NUP88-201ENST00000225696 PDE4BQ07343 736 aa14.34□□□□□ -0.11
NUP88-201ENST00000225696 IMMTQ16891 758 aaKnown RBP14.34□□□□□ -0.11
NUP88-201ENST00000225696 BRAPQ7Z569 592 aa14.34□□□□□ -0.11
NUP88-201ENST00000225696 PHKBQ93100 1093 aa14.34□□□□□ -0.11
NUP88-201ENST00000225696 FANCLQ9NW38 375 aa14.34□□□□□ -0.11
NUP88-201ENST00000225696 CWC25Q9NXE8 425 aaPredicted RBP14.34□□□□□ -0.11
NUP88-201ENST00000225696 TUBE1Q9UJT0 475 aa14.34□□□□□ -0.11
NUP88-201ENST00000225696 ZAP70P43403 619 aa14.33□□□□□ -0.11
NUP88-201ENST00000225696 KCNJ6P48051 423 aa14.33□□□□□ -0.11
NUP88-201ENST00000225696 CHRNA2Q15822 529 aa14.33□□□□□ -0.11
NUP88-201ENST00000225696 CFAP100Q494V2 611 aa14.33□□□□□ -0.11
NUP88-201ENST00000225696 SPECC1Q5M775 1068 aa14.33□□□□□ -0.11
NUP88-201ENST00000225696 METTL16Q86W50 562 aaKnown RBP14.33□□□□□ -0.11
NUP88-201ENST00000225696 TMEM139Q8IV31 216 aa14.33□□□□□ -0.11
NUP88-201ENST00000225696 CARD6Q9BX69 1037 aa14.33□□□□□ -0.11
NUP88-201ENST00000225696 HPSEQ9Y251 543 aa14.33□□□□□ -0.11
NUP88-201ENST00000225696 IKBKBO14920 756 aa14.33□□□□□ -0.12
NUP88-201ENST00000225696 URI1O94763 535 aaPredicted RBP14.33□□□□□ -0.12
NUP88-201ENST00000225696 ZRANB2O95218 330 aaKnown RBP eCLIP14.33□□□□□ -0.12
NUP88-201ENST00000225696 SERPINC1P01008 464 aa14.33□□□□□ -0.12
NUP88-201ENST00000225696 BMS1Q14692 1282 aaKnown RBP14.33□□□□□ -0.12
NUP88-201ENST00000225696 PTPAQ15257 358 aa14.33□□□□□ -0.12
NUP88-201ENST00000225696 LONRF3Q496Y0 759 aa14.33□□□□□ -0.12
NUP88-201ENST00000225696 VPS37DQ86XT2 251 aa14.33□□□□□ -0.12
NUP88-201ENST00000225696 XAGE2Q96GT9 111 aa14.33□□□□□ -0.12
NUP88-201ENST00000225696 DCAF5Q96JK2 942 aa14.33□□□□□ -0.12
NUP88-201ENST00000225696 INCENPQ9NQS7 918 aa14.33□□□□□ -0.12
NUP88-201ENST00000225696 PODXL2Q9NZ53 605 aa14.33□□□□□ -0.12
NUP88-201ENST00000225696 PARP3Q9Y6F1 533 aa14.33□□□□□ -0.12
NUP88-201ENST00000225696 VWA3AA6NCI4 1184 aa14.32□□□□□ -0.12
NUP88-201ENST00000225696 CABP4P57796 275 aa14.32□□□□□ -0.12
NUP88-201ENST00000225696 CYB5R4Q7L1T6 521 aa14.32□□□□□ -0.12
NUP88-201ENST00000225696 WDR24Q96S15 920 aa14.32□□□□□ -0.12
NUP88-201ENST00000225696 NOL10Q9BSC4 688 aaKnown RBP14.32□□□□□ -0.12
NUP88-201ENST00000225696 LMTK3Q96Q04 1460 aa14.32□□□□□ -0.12
NUP88-201ENST00000225696 GLI3P10071 1580 aa14.32□□□□□ -0.12
NUP88-201ENST00000225696 TADA3O75528 432 aa14.32□□□□□ -0.12
NUP88-201ENST00000225696 MYL5Q02045 173 aa14.32□□□□□ -0.12
NUP88-201ENST00000225696 TBC1D10CQ8IV04 446 aa14.32□□□□□ -0.12
NUP88-201ENST00000225696 VSTM4Q8IW00 320 aa14.32□□□□□ -0.12
NUP88-201ENST00000225696 MAP3K14Q99558 947 aa14.32□□□□□ -0.12
NUP88-201ENST00000225696 ALG1Q9BT22 464 aa14.32□□□□□ -0.12
NUP88-201ENST00000225696 GPAA1O43292 621 aa14.31□□□□□ -0.12
NUP88-201ENST00000225696 DHX16O60231 1041 aaKnown RBP14.31□□□□□ -0.12
NUP88-201ENST00000225696 SASH3O75995 380 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 268.4 ms