RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 ZNF430Q9H8G1 570 aaPredicted RBP2.43□□□□□ -2.02
SCN1A-219ENST00000641575 TMED7-TICAM2A0A0A6YYA0 188 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 TMEM250H0YL14 139 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 TMPRSS11DO60235 418 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 CR2P20023 1033 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 CAMPP49913 170 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 CLDN10P78369 228 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 INSM1Q01101 510 aaPredicted RBP2.43□□□□□ -2.02
SCN1A-219ENST00000641575 EGR3Q06889 387 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 GAGE2BQ13066 116 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF750Q32MQ0 723 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 PQLC2Q6ZP29 291 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 PTX4Q96A99 478 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 MISP3Q96FF7 219 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 LRRC61Q9BV99 259 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 TM2D2Q9BX73 214 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 TREX1Q9NSU2 369 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 ATP5G2Q06055 141 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 SNAI3Q3KNW1 292 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 ACP7Q6ZNF0 438 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 SLCO4C1Q6ZQN7 724 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 COMMD6Q7Z4G1 85 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 RAB40CQ96S21 281 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 DHCR7Q9UBM7 475 aaKnown RBP2.43□□□□□ -2.02
SCN1A-219ENST00000641575 ADAMTS20P59510 1910 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF840PA6NDX5 716 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 F12P00748 615 aaPredicted RBP2.43□□□□□ -2.02
SCN1A-219ENST00000641575 TNFRSF1BP20333 461 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 PMP22Q01453 160 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 PRDX1Q06830 199 aaKnown RBP2.43□□□□□ -2.02
SCN1A-219ENST00000641575 MMDQ15546 238 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 PNLIPRP3Q17RR3 467 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 SFTA2Q6UW10 78 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 OR2C3Q8N628 320 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 DNAJC19Q96DA6 116 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF414Q96IQ9 312 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 GGACTQ9BVM4 153 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 RSPO3Q9BXY4 272 aaPredicted RBP2.43□□□□□ -2.02
SCN1A-219ENST00000641575 MEGF9Q9H1U4 602 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 PRSS16Q9NQE7 514 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 MBNL3Q9NUK0 354 aaKnown RBP2.43□□□□□ -2.02
SCN1A-219ENST00000641575 BCL9LQ86UU0 1499 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 HMX2A2RU54 273 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 ATP5LO75964 103 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 HLA-DRB1P01911 266 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 RPS24P62847 133 aaKnown RBP2.43□□□□□ -2.02
SCN1A-219ENST00000641575 FAM219BQ5XKK7 198 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 Q71RC1 249 aaPredicted RBP2.43□□□□□ -2.02
SCN1A-219ENST00000641575 TCF23Q7RTU1 214 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 BCORQ6W2J9 1755 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 hCG_38984A0A1B0GV85 526 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 H3BQ85 93 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 SLC6A1P30531 599 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 CCL18P55774 89 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 GLDNQ6ZMI3 551 aaPredicted RBP2.43□□□□□ -2.02
SCN1A-219ENST00000641575 DUSP15Q9H1R2 295 aaPredicted RBP2.43□□□□□ -2.02
SCN1A-219ENST00000641575 CYSLTR1Q9Y271 337 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 LOC390937A0A1W2PQ73 354 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 TCRBV4S1A1TA0A5B7 111 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 MBLAC1A4D2B0 266 aaPredicted RBP2.43□□□□□ -2.02
SCN1A-219ENST00000641575 CEACAM4O75871 244 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 SLC2A10O95528 541 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 PSG2P11465 335 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 PIPP12273 146 aaPredicted RBP2.43□□□□□ -2.02
SCN1A-219ENST00000641575 CDKN1BP46527 198 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 DAPP51397 102 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 NCBP2-AS2Q69YL0 99 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 VKORC1L1Q8N0U8 176 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 LRTM2Q8N967 370 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 OR10S1Q8NGN2 331 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 OR6X1Q8NH79 312 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 OPALINQ96PE5 141 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 CLEC2DQ9UHP7 191 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 KCNE5Q9UJ90 142 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 COL14A1Q05707 1796 aaKnown RBP2.43□□□□□ -2.02
SCN1A-219ENST00000641575 RNF225M0QZC1 329 aaPredicted RBP2.43□□□□□ -2.02
SCN1A-219ENST00000641575 EIF3GO75821 320 aaKnown RBP eCLIP2.43□□□□□ -2.02
SCN1A-219ENST00000641575 NDUFB8O95169 186 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 RGNQ15493 299 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 MPV17LQ2QL34 196 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 SLC23A3Q6PIS1 610 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 LINC00518Q8N0U6 118 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 GLIS1Q8NBF1 620 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 OR52N4Q8NGI2 321 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 OR1B1Q8NGR6 318 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 ASB16Q96NS5 453 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 PAXXQ9BUH6 204 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 PDZD7Q9H5P4 517 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 SLC25A10Q9UBX3 287 aaPredicted RBP2.43□□□□□ -2.02
SCN1A-219ENST00000641575 PQLC2LA1A4F0 135 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 FCMRO60667 390 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 ZNF253O75346 499 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 KBTBD11O94819 623 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 HBZP02008 142 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 CCL3P10147 92 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 EVI2AP22794 236 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 OTX1P32242 354 aaPredicted RBP2.43□□□□□ -2.02
SCN1A-219ENST00000641575 LY6DQ14210 128 aa2.43□□□□□ -2.02
SCN1A-219ENST00000641575 SURF2Q15527 256 aaPredicted RBP2.43□□□□□ -2.02
SCN1A-219ENST00000641575 ITLN2Q8WWU7 325 aaPredicted RBP2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms