RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 B4GALNT1Q00973 533 aa4.9□□□□□ -1.62
SCN1A-216ENST00000637968 EGR4Q05215 589 aa4.9□□□□□ -1.62
SCN1A-216ENST00000637968 ATP5G2Q06055 141 aa4.9□□□□□ -1.62
SCN1A-216ENST00000637968 DLX2Q07687 328 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-216ENST00000637968 KLRD1Q13241 179 aa4.9□□□□□ -1.62
SCN1A-216ENST00000637968 PRSS53Q2L4Q9 553 aa4.9□□□□□ -1.62
SCN1A-216ENST00000637968 CXorf66Q5JRM2 361 aaPredicted RBP4.9□□□□□ -1.62
SCN1A-216ENST00000637968 UFSP1Q6NVU6 142 aa4.9□□□□□ -1.62
SCN1A-216ENST00000637968 LHFPL1Q86WI0 220 aa4.9□□□□□ -1.62
SCN1A-216ENST00000637968 OR5AN1Q8NGI8 311 aa4.9□□□□□ -1.62
SCN1A-216ENST00000637968 OR52N5Q8NH56 324 aa4.9□□□□□ -1.62
SCN1A-216ENST00000637968 PLAGL1Q9UM63 463 aa4.9□□□□□ -1.62
SCN1A-216ENST00000637968 H0YJW9 148 aa4.9□□□□□ -1.63
SCN1A-216ENST00000637968 B3GALT2O43825 422 aa4.9□□□□□ -1.63
SCN1A-216ENST00000637968 NMUP48645 174 aa4.9□□□□□ -1.63
SCN1A-216ENST00000637968 MGAT2Q10469 447 aa4.9□□□□□ -1.63
SCN1A-216ENST00000637968 FUT7Q11130 342 aa4.9□□□□□ -1.63
SCN1A-216ENST00000637968 FAM166AQ6J272 317 aa4.9□□□□□ -1.63
SCN1A-216ENST00000637968 C10orf126Q8N4M7 172 aa4.9□□□□□ -1.63
SCN1A-216ENST00000637968 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-216ENST00000637968 OR1A2Q9Y585 309 aa4.9□□□□□ -1.63
SCN1A-216ENST00000637968 ARID1BQ8NFD5 2236 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-216ENST00000637968 FABP5P3A8MUU1 101 aa4.9□□□□□ -1.63
SCN1A-216ENST00000637968 F2Z2F3 143 aa4.9□□□□□ -1.63
SCN1A-216ENST00000637968 CHEK1O14757 476 aa4.9□□□□□ -1.63
SCN1A-216ENST00000637968 MLNRO43193 412 aa4.9□□□□□ -1.63
SCN1A-216ENST00000637968 DHHO43323 396 aa4.9□□□□□ -1.63
SCN1A-216ENST00000637968 EGR1P18146 543 aa4.9□□□□□ -1.63
SCN1A-216ENST00000637968 CFHR2P36980 270 aa4.9□□□□□ -1.63
SCN1A-216ENST00000637968 TMEM50BP56557 158 aa4.9□□□□□ -1.63
SCN1A-216ENST00000637968 ZNF77Q15935 545 aa4.9□□□□□ -1.63
SCN1A-216ENST00000637968 CDKN3Q16667 212 aa4.9□□□□□ -1.63
SCN1A-216ENST00000637968 ANXA2RQ3ZCQ2 193 aa4.9□□□□□ -1.63
SCN1A-216ENST00000637968 NRN1LQ496H8 165 aa4.9□□□□□ -1.63
SCN1A-216ENST00000637968 HAPLN4Q86UW8 402 aa4.9□□□□□ -1.63
SCN1A-216ENST00000637968 DCAF4L2Q8NA75 395 aa4.9□□□□□ -1.63
SCN1A-216ENST00000637968 TAF15Q92804 592 aaKnown RBP eCLIP4.9□□□□□ -1.63
SCN1A-216ENST00000637968 CFHR5Q9BXR6 569 aa4.9□□□□□ -1.63
SCN1A-216ENST00000637968 DECR2Q9NUI1 292 aa4.9□□□□□ -1.63
SCN1A-216ENST00000637968 TNRC6AQ8NDV7 1962 aaKnown RBP4.9□□□□□ -1.63
SCN1A-216ENST00000637968 THSD7AQ9UPZ6 1657 aa4.9□□□□□ -1.63
SCN1A-216ENST00000637968 PATJQ8NI35 1801 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 KIR2DS5A0A0G2JLQ3 304 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 A0A0G2JNG1 304 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 OTOL1A6NHN0 477 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-216ENST00000637968 M0QZQ0 153 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 P2RY2P41231 377 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 SPINT3P49223 89 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 CAMPP49913 170 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 KIR2DS5Q14953 304 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 ASCL4Q6XD76 172 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 CENPVQ7Z7K6 275 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-216ENST00000637968 VN1R2Q8NFZ6 395 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 FAM131CQ96AQ9 280 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 KCNK17Q96T54 332 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 RAB9BQ9NP90 201 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 PDCD11Q14690 1871 aaKnown RBP4.89□□□□□ -1.63
SCN1A-216ENST00000637968 MCM3APO60318 1980 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 TDRD15B5MCY1 1934 aaKnown RBP4.89□□□□□ -1.63
SCN1A-216ENST00000637968 SYS1-DBNDD2H3BUS1 97 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 TNXAQ16473 311 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 LYSMD4Q5XG99 296 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 LRTM2Q8N967 370 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 C1orf162Q8NEQ5 155 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-216ENST00000637968 MAFAQ8NHW3 353 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-216ENST00000637968 TMEM171Q8WVE6 324 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 ARPC1AQ92747 370 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 SPAG8Q99932 426 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-216ENST00000637968 TMEM147Q9BVK8 224 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 RARRES3Q9UL19 164 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 PTRH2Q9Y3E5 179 aaKnown RBP4.89□□□□□ -1.63
SCN1A-216ENST00000637968 R4GN57 208 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 ALPK3Q96L96 1907 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 A0A087WV48 116 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 SYNGR2O43760 224 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 DUX1O43812 170 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 CELA3BP08861 270 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 DRD3P35462 400 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 GLRXP35754 106 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 MFAP2P55001 183 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 MALLQ13021 153 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 COL9A2Q14055 689 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-216ENST00000637968 CLLU1OSQ5K130 101 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 SLC48A1Q6P1K1 146 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 ZNF502Q8TBZ5 544 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 SCAMP4Q969E2 229 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 DUX5Q96PT3 197 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 PRRG4Q9BZD6 226 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 NXF5Q9H1B4 397 aaKnown RBP4.89□□□□□ -1.63
SCN1A-216ENST00000637968 VPREB3Q9UKI3 123 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 TIMM9Q9Y5J7 89 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 HCFC2Q9Y5Z7 792 aa4.89□□□□□ -1.63
SCN1A-216ENST00000637968 F11RQ9Y624 299 aaKnown RBP4.89□□□□□ -1.63
SCN1A-216ENST00000637968 COL11A1P12107 1806 aaPredicted RBP4.89□□□□□ -1.63
SCN1A-216ENST00000637968 ZNF840PA6NDX5 716 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 SRSF10O75494 262 aaKnown RBP4.88□□□□□ -1.63
SCN1A-216ENST00000637968 COX8AP10176 69 aa4.88□□□□□ -1.63
SCN1A-216ENST00000637968 VDAC2P45880 294 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-216ENST00000637968 RPS15AP62244 130 aaKnown RBP4.88□□□□□ -1.63
SCN1A-216ENST00000637968 UNC119Q13432 240 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms