RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 OR4C12Q96R67 309 aa8.81□□□□□ -1
CUX1-221ENST00000622516 RPS10P5Q9NQ39 176 aa8.81□□□□□ -1
CUX1-221ENST00000622516 CHTOPQ9Y3Y2 248 aaKnown RBP8.81□□□□□ -1
CUX1-221ENST00000622516 DSCAML1Q8TD84 2053 aa8.81□□□□□ -1
CUX1-221ENST00000622516 RAI1Q7Z5J4 1906 aaPredicted RBP8.81□□□□□ -1
CUX1-221ENST00000622516 LRRC30A6NM36 301 aa8.81□□□□□ -1
CUX1-221ENST00000622516 MARCH11A6NNE9 402 aa8.81□□□□□ -1
CUX1-221ENST00000622516 UMAD1C9J7I0 102 aa8.81□□□□□ -1
CUX1-221ENST00000622516 MGST3O14880 152 aa8.81□□□□□ -1
CUX1-221ENST00000622516 TAS2R30P59541 319 aa8.81□□□□□ -1
CUX1-221ENST00000622516 SELENOVP59797 346 aa8.81□□□□□ -1
CUX1-221ENST00000622516 LCN15Q6UWW0 184 aa8.81□□□□□ -1
CUX1-221ENST00000622516 ZNF525Q8N782 197 aa8.81□□□□□ -1
CUX1-221ENST00000622516 RPRMQ9NS64 109 aa8.81□□□□□ -1
CUX1-221ENST00000622516 DMRT1Q9Y5R6 373 aa8.81□□□□□ -1
CUX1-221ENST00000622516 SPTAN1Q13813 2472 aaKnown RBP8.81□□□□□ -1
CUX1-221ENST00000622516 GZMHP20718 246 aa8.8□□□□□ -1
CUX1-221ENST00000622516 G0S2P27469 103 aa8.8□□□□□ -1
CUX1-221ENST00000622516 LOXL3P58215 753 aa8.8□□□□□ -1
CUX1-221ENST00000622516 CYB5R2Q6BCY4 276 aa8.8□□□□□ -1
CUX1-221ENST00000622516 SSX7Q7RTT5 188 aa8.8□□□□□ -1
CUX1-221ENST00000622516 SCGB1C1Q8TD33 95 aa8.8□□□□□ -1
CUX1-221ENST00000622516 PUS1Q9Y606 427 aaKnown RBP eCLIP8.8□□□□□ -1
CUX1-221ENST00000622516 AKAP6Q13023 2319 aa8.8□□□□□ -1
CUX1-221ENST00000622516 A0A1B0GV90 55 aa8.8□□□□□ -1
CUX1-221ENST00000622516 MMP23AO75900 390 aa8.8□□□□□ -1
CUX1-221ENST00000622516 THBDP07204 575 aa8.8□□□□□ -1
CUX1-221ENST00000622516 OR4A8P0C604 315 aa8.8□□□□□ -1
CUX1-221ENST00000622516 DEFA4P12838 97 aa8.8□□□□□ -1
CUX1-221ENST00000622516 DUTP33316 252 aaKnown RBP8.8□□□□□ -1
CUX1-221ENST00000622516 GNG10P50151 68 aa8.8□□□□□ -1
CUX1-221ENST00000622516 HFEQ30201 348 aa8.8□□□□□ -1
CUX1-221ENST00000622516 AWAT1Q58HT5 328 aa8.8□□□□□ -1
CUX1-221ENST00000622516 SLC16A13Q7RTY0 426 aa8.8□□□□□ -1
CUX1-221ENST00000622516 RXFP4Q8TDU9 374 aa8.8□□□□□ -1
CUX1-221ENST00000622516 NEUROG1Q92886 237 aa8.8□□□□□ -1
CUX1-221ENST00000622516 GNPNAT1Q96EK6 184 aaPredicted RBP8.8□□□□□ -1
CUX1-221ENST00000622516 CLCC1Q96S66 551 aa8.8□□□□□ -1
CUX1-221ENST00000622516 RNF7Q9UBF6 113 aa8.8□□□□□ -1
CUX1-221ENST00000622516 TRAV3A0A0B4J244 114 aa8.79□□□□□ -1
CUX1-221ENST00000622516 TMPRSS2O15393 492 aa8.79□□□□□ -1
CUX1-221ENST00000622516 ADH4P08319 380 aa8.79□□□□□ -1
CUX1-221ENST00000622516 OR9G9P0C7N8 305 aa8.79□□□□□ -1
CUX1-221ENST00000622516 SMIM6P0DI80 62 aa8.79□□□□□ -1
CUX1-221ENST00000622516 S100PP25815 95 aa8.79□□□□□ -1
CUX1-221ENST00000622516 SSX2Q16385 188 aa8.79□□□□□ -1
CUX1-221ENST00000622516 EIF2S3LQ2VIR3 472 aaKnown RBP8.79□□□□□ -1
CUX1-221ENST00000622516 TMEM108Q6UXF1 575 aa8.79□□□□□ -1
CUX1-221ENST00000622516 C1orf174Q8IYL3 243 aa8.79□□□□□ -1
CUX1-221ENST00000622516 ZFP82Q8N141 532 aa8.79□□□□□ -1
CUX1-221ENST00000622516 ZBTB34Q8NCN2 500 aa8.79□□□□□ -1
CUX1-221ENST00000622516 QTRT1Q9BXR0 403 aaKnown RBP8.79□□□□□ -1
CUX1-221ENST00000622516 NIT2Q9NQR4 276 aa8.79□□□□□ -1
CUX1-221ENST00000622516 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.79□□□□□ -1
CUX1-221ENST00000622516 CALYQ9NYX4 217 aa8.79□□□□□ -1
CUX1-221ENST00000622516 TET2Q6N021 2002 aaPredicted RBP8.79□□□□□ -1
CUX1-221ENST00000622516 RBFOX3A6NFN3 312 aa8.79□□□□□ -1
CUX1-221ENST00000622516 CEBPZOSA8MTT3 80 aa8.79□□□□□ -1
CUX1-221ENST00000622516 DFFBO76075 338 aa8.79□□□□□ -1
CUX1-221ENST00000622516 WNT2P09544 360 aa8.79□□□□□ -1
CUX1-221ENST00000622516 HTD2P86397 168 aa8.79□□□□□ -1
CUX1-221ENST00000622516 SLC38A11Q08AI6 406 aa8.79□□□□□ -1
CUX1-221ENST00000622516 C17orf58Q2M2W7 97 aa8.79□□□□□ -1
CUX1-221ENST00000622516 DHRS7BQ6IAN0 325 aaPredicted RBP8.79□□□□□ -1
CUX1-221ENST00000622516 Q8TCH9 128 aa8.79□□□□□ -1
CUX1-221ENST00000622516 SLC35B3Q9H1N7 401 aa8.79□□□□□ -1
CUX1-221ENST00000622516 HSPB7Q9UBY9 170 aa8.79□□□□□ -1
CUX1-221ENST00000622516 MED13LQ71F56 2210 aa8.79□□□□□ -1
CUX1-221ENST00000622516 ZFP92A6NM28 416 aa8.79□□□□□ -1
CUX1-221ENST00000622516 P0C879 139 aa8.79□□□□□ -1
CUX1-221ENST00000622516 GPX4P36969 197 aaPredicted RBP8.79□□□□□ -1
CUX1-221ENST00000622516 ADIPOQQ15848 244 aa8.79□□□□□ -1
CUX1-221ENST00000622516 MRGPRGQ86SM5 289 aa8.79□□□□□ -1
CUX1-221ENST00000622516 PPP1R35Q8TAP8 253 aa8.79□□□□□ -1
CUX1-221ENST00000622516 DTD1Q8TEA8 209 aa8.79□□□□□ -1
CUX1-221ENST00000622516 R3HDM4Q96D70 268 aa8.79□□□□□ -1
CUX1-221ENST00000622516 PBDC1Q9BVG4 233 aa8.79□□□□□ -1
CUX1-221ENST00000622516 GNG13Q9P2W3 67 aa8.79□□□□□ -1
CUX1-221ENST00000622516 MAP1AP78559 2803 aaPredicted RBP8.78□□□□□ -1
CUX1-221ENST00000622516 C7orf77A4D0Y5 90 aa8.78□□□□□ -1
CUX1-221ENST00000622516 IFNA17P01571 189 aa8.78□□□□□ -1
CUX1-221ENST00000622516 IGHV2-70P01814 119 aa8.78□□□□□ -1
CUX1-221ENST00000622516 ARG1P05089 322 aa8.78□□□□□ -1
CUX1-221ENST00000622516 NDUFB7P17568 137 aa8.78□□□□□ -1
CUX1-221ENST00000622516 CFHR2P36980 270 aa8.78□□□□□ -1
CUX1-221ENST00000622516 HBG1P69891 147 aa8.78□□□□□ -1
CUX1-221ENST00000622516 HBG2P69892 147 aa8.78□□□□□ -1
CUX1-221ENST00000622516 MSMO1Q15800 293 aa8.78□□□□□ -1
CUX1-221ENST00000622516 ZNF726P1Q15940 193 aa8.78□□□□□ -1
CUX1-221ENST00000622516 CT45A1Q5HYN5 189 aa8.78□□□□□ -1
CUX1-221ENST00000622516 CT45A3Q8NHU0 189 aa8.78□□□□□ -1
CUX1-221ENST00000622516 C2CD4CQ8TF44 421 aa8.78□□□□□ -1
CUX1-221ENST00000622516 CCL17Q92583 94 aa8.78□□□□□ -1
CUX1-221ENST00000622516 C14orf79Q96F83 325 aa8.78□□□□□ -1
CUX1-221ENST00000622516 WFIKKN1Q96NZ8 548 aa8.78□□□□□ -1
CUX1-221ENST00000622516 IFI27L2Q9H2X8 130 aa8.78□□□□□ -1
CUX1-221ENST00000622516 IL19Q9UHD0 177 aa8.78□□□□□ -1
CUX1-221ENST00000622516 KPTNQ9Y664 436 aa8.78□□□□□ -1
CUX1-221ENST00000622516 LYG1Q8N1E2 194 aa8.78□□□□□ -1
CUX1-221ENST00000622516 EDARADDQ8WWZ3 215 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms