RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 HSPB8Q9UJY1 196 aa9.7□□□□□ -0.86
CLIP1-219ENST00000620786 EGR4Q05215 589 aa9.7□□□□□ -0.86
CLIP1-219ENST00000620786 RGP1Q92546 391 aaPredicted RBP9.7□□□□□ -0.86
CLIP1-219ENST00000620786 MIEN1Q9BRT3 115 aa9.7□□□□□ -0.86
CLIP1-219ENST00000620786 PHLDA3Q9Y5J5 127 aa9.7□□□□□ -0.86
CLIP1-219ENST00000620786 ZIC3O60481 467 aa9.7□□□□□ -0.86
CLIP1-219ENST00000620786 MPDU1O75352 247 aa9.7□□□□□ -0.86
CLIP1-219ENST00000620786 ACAA1P09110 424 aaPredicted RBP9.7□□□□□ -0.86
CLIP1-219ENST00000620786 CHAC2Q8WUX2 184 aa9.7□□□□□ -0.86
CLIP1-219ENST00000620786 GPHA2Q96T91 129 aa9.7□□□□□ -0.86
CLIP1-219ENST00000620786 NEURL2Q9BR09 285 aa9.7□□□□□ -0.86
CLIP1-219ENST00000620786 OPN4Q9UHM6 478 aa9.7□□□□□ -0.86
CLIP1-219ENST00000620786 B4DEV8 164 aa9.69□□□□□ -0.86
CLIP1-219ENST00000620786 RUNX1Q01196 453 aa9.69□□□□□ -0.86
CLIP1-219ENST00000620786 HERPUD1Q15011 391 aa9.69□□□□□ -0.86
CLIP1-219ENST00000620786 MIC13Q5XKP0 118 aa9.69□□□□□ -0.86
CLIP1-219ENST00000620786 MRPL14Q6P1L8 145 aaKnown RBP9.69□□□□□ -0.86
CLIP1-219ENST00000620786 SLC16A13Q7RTY0 426 aa9.69□□□□□ -0.86
CLIP1-219ENST00000620786 JMJD8Q96S16 334 aa9.69□□□□□ -0.86
CLIP1-219ENST00000620786 CBLN4Q9NTU7 201 aa9.69□□□□□ -0.86
CLIP1-219ENST00000620786 IGHV3-35A0A0C4DH35 117 aa9.69□□□□□ -0.86
CLIP1-219ENST00000620786 SNURFLB1AK76 121 aa9.69□□□□□ -0.86
CLIP1-219ENST00000620786 M0R3E3 92 aa9.69□□□□□ -0.86
CLIP1-219ENST00000620786 KLF7O75840 302 aaPredicted RBP9.69□□□□□ -0.86
CLIP1-219ENST00000620786 RTN4RL2Q86UN3 420 aa9.69□□□□□ -0.86
CLIP1-219ENST00000620786 Q96M66 194 aa9.69□□□□□ -0.86
CLIP1-219ENST00000620786 TUBGCP6Q96RT7 1819 aa9.69□□□□□ -0.86
CLIP1-219ENST00000620786 SRSF9Q13242 221 aaKnown RBP eCLIP9.69□□□□□ -0.86
CLIP1-219ENST00000620786 HSF4Q9ULV5 492 aa9.69□□□□□ -0.86
CLIP1-219ENST00000620786 GCM2O75603 506 aaPredicted RBP9.69□□□□□ -0.86
CLIP1-219ENST00000620786 RPL39P5Q59GN2 51 aa9.69□□□□□ -0.86
CLIP1-219ENST00000620786 OR1N2Q8NGR9 330 aa9.69□□□□□ -0.86
CLIP1-219ENST00000620786 AQP3Q92482 292 aa9.69□□□□□ -0.86
CLIP1-219ENST00000620786 IMMP1LQ96LU5 166 aa9.69□□□□□ -0.86
CLIP1-219ENST00000620786 RSG1Q9BU20 258 aa9.69□□□□□ -0.86
CLIP1-219ENST00000620786 ZNF324O75467 553 aaPredicted RBP9.69□□□□□ -0.86
CLIP1-219ENST00000620786 CFDP00746 253 aaPredicted RBP9.69□□□□□ -0.86
CLIP1-219ENST00000620786 BTF3P20290 206 aaKnown RBP9.69□□□□□ -0.86
CLIP1-219ENST00000620786 ANOS1P23352 680 aa9.69□□□□□ -0.86
CLIP1-219ENST00000620786 C1QTNF12Q5T7M4 302 aa9.69□□□□□ -0.86
CLIP1-219ENST00000620786 ANGPTL6Q8NI99 470 aa9.69□□□□□ -0.86
CLIP1-219ENST00000620786 DPM3Q9P2X0 92 aa9.69□□□□□ -0.86
CLIP1-219ENST00000620786 TRBV5-7A0A0A0MS05 114 aa9.68□□□□□ -0.86
CLIP1-219ENST00000620786 ZG16O60844 167 aa9.68□□□□□ -0.86
CLIP1-219ENST00000620786 VDAC2P45880 294 aaPredicted RBP9.68□□□□□ -0.86
CLIP1-219ENST00000620786 CD81P60033 236 aa9.68□□□□□ -0.86
CLIP1-219ENST00000620786 FAM216BQ8N7L0 139 aa9.68□□□□□ -0.86
CLIP1-219ENST00000620786 IGHV3-66A0A0C4DH42 116 aa9.68□□□□□ -0.86
CLIP1-219ENST00000620786 RPL29P47914 159 aaKnown RBP9.68□□□□□ -0.86
CLIP1-219ENST00000620786 ZNF146Q15072 292 aa9.68□□□□□ -0.86
CLIP1-219ENST00000620786 C1orf100Q5SVJ3 147 aa9.68□□□□□ -0.86
CLIP1-219ENST00000620786 ITLN2Q8WWU7 325 aaPredicted RBP9.68□□□□□ -0.86
CLIP1-219ENST00000620786 BRCA1P38398 1863 aaKnown RBP9.68□□□□□ -0.86
CLIP1-219ENST00000620786 SEC11BP0C7V7 166 aa9.68□□□□□ -0.86
CLIP1-219ENST00000620786 HIST1H1AQ02539 215 aaPredicted RBP9.68□□□□□ -0.86
CLIP1-219ENST00000620786 SCN10AQ9Y5Y9 1956 aa9.68□□□□□ -0.86
CLIP1-219ENST00000620786 OR4C46A6NHA9 309 aa9.68□□□□□ -0.86
CLIP1-219ENST00000620786 NUTF2P61970 127 aaKnown RBP9.68□□□□□ -0.86
CLIP1-219ENST00000620786 VPS25Q9BRG1 176 aa9.68□□□□□ -0.86
CLIP1-219ENST00000620786 MOB4Q9Y3A3 225 aa9.68□□□□□ -0.86
CLIP1-219ENST00000620786 LOC285556D6RIA3 1793 aa9.68□□□□□ -0.86
CLIP1-219ENST00000620786 A0A0B4J293 547 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 LOC390937A0A1W2PQ73 354 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 H3BQ15 152 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 HOXA6P31267 233 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 SERF2P84101 59 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 PPP1R27Q86WC6 154 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 DNAJC4Q9NNZ3 241 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 LYRM2Q9NU23 88 aaPredicted RBP9.67□□□□□ -0.86
CLIP1-219ENST00000620786 TNFSF18Q9UNG2 199 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 FUT9Q9Y231 359 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 IGKV3OR2-268A0A0C4DH90 116 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 TGFBR3LH3BV60 316 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 RAB9AP51151 201 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 HSD17B13Q7Z5P4 300 aaPredicted RBP9.67□□□□□ -0.86
CLIP1-219ENST00000620786 WDFY1Q8IWB7 410 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 KNL1Q8NG31 2342 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 TMEM262E9PQX1 116 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 H0YL77 283 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 TM4SF5O14894 197 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 KBTBD11O94819 623 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 CELA3BP08861 270 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 UNQ6494/PRO21346Q6UXR6 183 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 ZNF818PQ6ZRF7 136 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 METRNQ9UJH8 293 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 IGHV3OR16-13A0A075B7E8 117 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 IGHV3-74A0A0B4J1X5 117 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 H3BTX0 84 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 EFEMP2O95967 443 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 IGHV3-48P01763 117 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 TNFRSF9Q07011 255 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 COLCA1Q6ZS62 124 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 H1FOOQ8IZA3 346 aaPredicted RBP9.67□□□□□ -0.86
CLIP1-219ENST00000620786 C12orf57Q99622 126 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 FBXL15Q9H469 300 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 OR5AC2Q9NZP5 309 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 MRPS18CQ9Y3D5 142 aaKnown RBP9.67□□□□□ -0.86
CLIP1-219ENST00000620786 C17orf100A8MU93 164 aa9.67□□□□□ -0.86
CLIP1-219ENST00000620786 PTBP3O95758 552 aaKnown RBP9.67□□□□□ -0.86
CLIP1-219ENST00000620786 S4R3C0 116 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms