RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 GAR1Q9NY12 217 aaKnown RBP7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 NAT1P18440 290 aa7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 DPPA3Q6W0C5 159 aa7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 GINS3Q9BRX5 216 aa7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 METRNQ9UJH8 293 aa7.53□□□□□ -1.2
PDLIM5-222ENST00000615540 HOXD4P09016 255 aaPredicted RBP7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 GAMTQ14353 236 aa7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 WDR82Q6UXN9 313 aa7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 ZNF497Q6ZNH5 498 aa7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 FUT9Q9Y231 359 aa7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 A0A1W2PN81 502 aa7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 PGA5P0DJD9 388 aa7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 HIST1H3AP68431 136 aa7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 PMS2P11Q13670 270 aa7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 ZNF324BQ6AW86 544 aaPredicted RBP7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 SSX7Q7RTT5 188 aa7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 SIGLECL1Q8N7X8 197 aa7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 MDS2Q8NDY4 140 aa7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 LURAP1Q96LR2 239 aa7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 SIRT7Q9NRC8 400 aa7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 CTXND1A0A1B0GTU2 59 aa7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 CXorf1O96002 111 aa7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 FAM157CP0CG43 387 aa7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 ARL14EPLP0DKL9 152 aa7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 PEAR1Q5VY43 1037 aaPredicted RBP7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 MRPL37Q9BZE1 423 aaKnown RBP7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 MRGPRGQ86SM5 289 aa7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 FAM57AQ8TBR7 257 aa7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 RAB1CQ92928 201 aa7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 TECRQ9NZ01 308 aaKnown RBP7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 CRIM1Q9NZV1 1036 aa7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 METTL1Q9UBP6 276 aaKnown RBP7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 RAXQ9Y2V3 346 aa7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 CACNA1IQ9P0X4 2223 aa7.52□□□□□ -1.21
PDLIM5-222ENST00000615540 OR10J1P30954 320 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 ETFRF1Q6IPR1 90 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 KCNMB2Q9Y691 235 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 CHD7Q9P2D1 2997 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 IGHV3OR16-10A0A075B7F0 116 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 H3BTX0 84 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 FCN1O00602 326 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 EGR1P18146 543 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 ECSCRQ19T08 205 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 LSM10Q969L4 123 aaKnown RBP7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 MS4A5Q9H3V2 200 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 REV3LO60673 3130 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 NDUFB4O95168 129 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 CD55P08174 381 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 LINC00205P59089 165 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 SLC35B1P78383 322 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 CLEC5AQ9NY25 188 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 NAT8BQ9UHF3 227 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 IGKV3D-15A0A087WSY6 115 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 J3KRW8 73 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 MMDQ15546 238 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 KHDC3LQ587J8 217 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 ZNF343Q6P1L6 599 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 PDPNQ86YL7 162 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 OR1L4Q8NGR5 311 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 JPT1Q9UK76 154 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 SLC25A17O43808 307 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 CEACAM1P13688 526 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 SPCS3P61009 180 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 RNF212Q495C1 297 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 RNASEKQ6P5S7 137 aaKnown RBP7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 C20orf204Q6ZNR8 217 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 SCNM1Q9BWG6 230 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 FBLN5Q9UBX5 448 aa7.51□□□□□ -1.21
PDLIM5-222ENST00000615540 TIMM23BQ5SRD1 257 aa7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 OR2T6Q8NHC8 308 aa7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 TRBV6-7A0A0A0MS04 114 aa7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 IGHV1-69-2A0A0G2JMI3 117 aa7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 AP4M1O00189 453 aa7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 CT45A10P0DMU9 189 aa7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 MEOX2P50222 304 aa7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 FAM3BP58499 235 aaPredicted RBP7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 MRPL54Q6P161 138 aaKnown RBP7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 OR4F17Q8NGA8 305 aa7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 SMIM8Q96KF7 97 aa7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 CTDSP1Q9GZU7 261 aa7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 VSIRQ9H7M9 311 aa7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 SEBOXQ9HB31 216 aaPredicted RBP7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 CEACAM18A8MTB9 384 aa7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 IGHV3-23P01764 117 aa7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 CAMPP49913 170 aa7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 PARD6AQ9NPB6 346 aa7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 A8MXK9 166 aa7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 LYNX1G3V0Z9 82 aa7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 PHOX2AO14813 284 aa7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 LYNX1P0DP58 116 aa7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 LHFPL5Q8TAF8 219 aa7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 IL22RA2Q969J5 263 aa7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 AP1S3Q96PC3 154 aa7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 S4R3C0 116 aa7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 SELLP14151 372 aa7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 MPZP25189 248 aa7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 OR1L8Q8NGR8 309 aa7.5□□□□□ -1.21
PDLIM5-222ENST00000615540 PDE6DO43924 150 aa7.49□□□□□ -1.21
PDLIM5-222ENST00000615540 CA2P00918 260 aa7.49□□□□□ -1.21
PDLIM5-222ENST00000615540 GATAD1Q8WUU5 269 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms