RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 GTF3AQ92664 365 aaKnown RBP10.65□□□□□ -0.7
LIG1-221ENST00000613670 NPCDR1Q9BY65 106 aa10.65□□□□□ -0.7
LIG1-221ENST00000613670 H0Y8G0 127 aa10.65□□□□□ -0.7
LIG1-221ENST00000613670 OR4A8P0C604 315 aa10.65□□□□□ -0.7
LIG1-221ENST00000613670 OR1L6Q8NGR2 347 aa10.65□□□□□ -0.7
LIG1-221ENST00000613670 SLC17A3O00476 420 aa10.65□□□□□ -0.71
LIG1-221ENST00000613670 PDE6DO43924 150 aa10.65□□□□□ -0.71
LIG1-221ENST00000613670 RNPS1Q15287 305 aaKnown RBP10.65□□□□□ -0.71
LIG1-221ENST00000613670 ZNF124Q15973 351 aa10.65□□□□□ -0.71
LIG1-221ENST00000613670 ABHD12Q8N2K0 398 aa10.65□□□□□ -0.71
LIG1-221ENST00000613670 OR2Z1Q8NG97 314 aa10.65□□□□□ -0.71
LIG1-221ENST00000613670 HSD17B10Q99714 261 aaKnown RBP10.65□□□□□ -0.71
LIG1-221ENST00000613670 TTTY12Q9BZ98 90 aa10.65□□□□□ -0.71
LIG1-221ENST00000613670 OR6C3Q9NZP0 311 aa10.65□□□□□ -0.71
LIG1-221ENST00000613670 RNF115Q9Y4L5 304 aa10.65□□□□□ -0.71
LIG1-221ENST00000613670 TRAV1-1A0A0B4J248 108 aa10.64□□□□□ -0.71
LIG1-221ENST00000613670 ARL14EPLP0DKL9 152 aa10.64□□□□□ -0.71
LIG1-221ENST00000613670 IL3RAP26951 378 aa10.64□□□□□ -0.71
LIG1-221ENST00000613670 TMEM183BQ1AE95 376 aa10.64□□□□□ -0.71
LIG1-221ENST00000613670 SMIM21Q3B7S5 101 aa10.64□□□□□ -0.71
LIG1-221ENST00000613670 FOXL2NBQ6ZUU3 175 aa10.64□□□□□ -0.71
LIG1-221ENST00000613670 OR5AU1Q8NGC0 362 aa10.64□□□□□ -0.71
LIG1-221ENST00000613670 DCTN5Q9BTE1 182 aa10.64□□□□□ -0.71
LIG1-221ENST00000613670 ZNF331Q9NQX6 463 aaPredicted RBP10.64□□□□□ -0.71
LIG1-221ENST00000613670 KLF13Q9Y2Y9 288 aaPredicted RBP10.64□□□□□ -0.71
LIG1-221ENST00000613670 TRGV5A0A0B4J1U4 118 aa10.64□□□□□ -0.71
LIG1-221ENST00000613670 OOEPA6NGQ2 149 aa10.64□□□□□ -0.71
LIG1-221ENST00000613670 SRP14P37108 136 aaKnown RBP10.64□□□□□ -0.71
LIG1-221ENST00000613670 FAM53AQ6NSI3 398 aaPredicted RBP10.64□□□□□ -0.71
LIG1-221ENST00000613670 LINC00596Q86U02 117 aa10.64□□□□□ -0.71
LIG1-221ENST00000613670 LRRC29Q8WV35 223 aa10.64□□□□□ -0.71
LIG1-221ENST00000613670 DERL1Q9BUN8 251 aa10.64□□□□□ -0.71
LIG1-221ENST00000613670 SEMA5BQ9P283 1151 aa10.64□□□□□ -0.71
LIG1-221ENST00000613670 PXMP4Q9Y6I8 212 aa10.64□□□□□ -0.71
LIG1-221ENST00000613670 LOC102723996A0A087X1L8 192 aa10.64□□□□□ -0.71
LIG1-221ENST00000613670 MARCH11A6NNE9 402 aa10.64□□□□□ -0.71
LIG1-221ENST00000613670 C12orf77C9JDV5 145 aa10.64□□□□□ -0.71
LIG1-221ENST00000613670 ZNF253O75346 499 aa10.64□□□□□ -0.71
LIG1-221ENST00000613670 TRA2AQ13595 282 aaKnown RBP eCLIP10.64□□□□□ -0.713e-6■□□□□ 10
LIG1-221ENST00000613670 PCSK4Q6UW60 755 aa10.64□□□□□ -0.71
LIG1-221ENST00000613670 TMEM256Q8N2U0 113 aa10.64□□□□□ -0.71
LIG1-221ENST00000613670 ZNF645Q8N7E2 425 aa10.64□□□□□ -0.71
LIG1-221ENST00000613670 PROK2Q9HC23 129 aa10.64□□□□□ -0.71
LIG1-221ENST00000613670 CLCF1Q9UBD9 225 aa10.64□□□□□ -0.71
LIG1-221ENST00000613670 PRUNE2Q8WUY3 3088 aa10.63□□□□□ -0.71
LIG1-221ENST00000613670 GNG4P50150 75 aa10.63□□□□□ -0.71
LIG1-221ENST00000613670 SELENOVP59797 346 aa10.63□□□□□ -0.71
LIG1-221ENST00000613670 PSG5Q15238 335 aa10.63□□□□□ -0.71
LIG1-221ENST00000613670 KCNIP2Q9NS61 270 aa10.63□□□□□ -0.71
LIG1-221ENST00000613670 GNG10P50151 68 aa10.63□□□□□ -0.71
LIG1-221ENST00000613670 CCL11P51671 97 aa10.63□□□□□ -0.71
LIG1-221ENST00000613670 ABLIM2Q6H8Q1 611 aa10.63□□□□□ -0.71
LIG1-221ENST00000613670 OR5R1Q8NH85 324 aa10.63□□□□□ -0.71
LIG1-221ENST00000613670 TMEM170AQ8WVE7 144 aa10.63□□□□□ -0.71
LIG1-221ENST00000613670 POM121L2Q96KW2 1035 aa10.63□□□□□ -0.71
LIG1-221ENST00000613670 TMEM242Q9NWH2 141 aa10.63□□□□□ -0.71
LIG1-221ENST00000613670 HEATR1Q9H583 2144 aaKnown RBP10.63□□□□□ -0.71
LIG1-221ENST00000613670 CELA3BP08861 270 aa10.63□□□□□ -0.71
LIG1-221ENST00000613670 FBXW9Q5XUX1 488 aa10.63□□□□□ -0.71
LIG1-221ENST00000613670 LYG1Q8N1E2 194 aa10.63□□□□□ -0.71
LIG1-221ENST00000613670 QTRT1Q9BXR0 403 aaKnown RBP10.63□□□□□ -0.71
LIG1-221ENST00000613670 SLC35D1Q9NTN3 355 aa10.63□□□□□ -0.71
LIG1-221ENST00000613670 IFNL4K9M1U5 179 aa10.62□□□□□ -0.71
LIG1-221ENST00000613670 IGKV1D-33P01593 117 aa10.62□□□□□ -0.71
LIG1-221ENST00000613670 IGKV1-33P01594 117 aa10.62□□□□□ -0.71
LIG1-221ENST00000613670 GZMHP20718 246 aa10.62□□□□□ -0.71
LIG1-221ENST00000613670 RND2P52198 227 aa10.62□□□□□ -0.71
LIG1-221ENST00000613670 HOXA4Q00056 320 aaPredicted RBP10.62□□□□□ -0.71
LIG1-221ENST00000613670 OR8I2Q8N0Y5 310 aa10.62□□□□□ -0.71
LIG1-221ENST00000613670 LEAP2Q969E1 77 aa10.62□□□□□ -0.71
LIG1-221ENST00000613670 RHOBP62745 196 aa10.62□□□□□ -0.71
LIG1-221ENST00000613670 GNB2P62879 340 aa10.62□□□□□ -0.71
LIG1-221ENST00000613670 ZNF718Q3SXZ3 478 aa10.62□□□□□ -0.71
LIG1-221ENST00000613670 TGIF2LYQ8IUE0 185 aa10.62□□□□□ -0.71
LIG1-221ENST00000613670 PKIBQ9C010 78 aa10.62□□□□□ -0.71
LIG1-221ENST00000613670 PRRC2CQ9Y520 2896 aaKnown RBP10.62□□□□□ -0.71
LIG1-221ENST00000613670 VCANP13611 3396 aa10.62□□□□□ -0.71
LIG1-221ENST00000613670 FAM90A26D6RGX4 464 aa10.62□□□□□ -0.71
LIG1-221ENST00000613670 EREGO14944 169 aa10.62□□□□□ -0.71
LIG1-221ENST00000613670 IGKV1-39P01597 117 aa10.62□□□□□ -0.71
LIG1-221ENST00000613670 IGKV1D-39P04432 117 aa10.62□□□□□ -0.71
LIG1-221ENST00000613670 FXYD3Q14802 87 aa10.62□□□□□ -0.71
LIG1-221ENST00000613670 LBHQ53QV2 105 aaPredicted RBP10.62□□□□□ -0.71
LIG1-221ENST00000613670 Q6ZPA2 131 aa10.62□□□□□ -0.71
LIG1-221ENST00000613670 SFRP2Q96HF1 295 aa10.62□□□□□ -0.71
LIG1-221ENST00000613670 MRPL18Q9H0U6 180 aaKnown RBP10.62□□□□□ -0.71
LIG1-221ENST00000613670 ADAMTS9Q9P2N4 1935 aa10.61□□□□□ -0.71
LIG1-221ENST00000613670 EML6Q6ZMW3 1958 aa10.61□□□□□ -0.71
LIG1-221ENST00000613670 NBASA2RRP1 2371 aa10.61□□□□□ -0.71
LIG1-221ENST00000613670 RIF1Q5UIP0 2472 aaKnown RBP10.61□□□□□ -0.71
LIG1-221ENST00000613670 IGHV3OR15-7A0A075B7D8 119 aa10.61□□□□□ -0.71
LIG1-221ENST00000613670 SCO2A0A1W2PP80 73 aa10.61□□□□□ -0.71
LIG1-221ENST00000613670 HSBP1O75506 76 aa10.61□□□□□ -0.71
LIG1-221ENST00000613670 RPLP1P05386 114 aaKnown RBP10.61□□□□□ -0.71
LIG1-221ENST00000613670 B3GALT5-AS1P59052 145 aa10.61□□□□□ -0.71
LIG1-221ENST00000613670 RPL30P62888 115 aaKnown RBP10.61□□□□□ -0.71
LIG1-221ENST00000613670 TRIOO75962 3097 aa10.61□□□□□ -0.71
LIG1-221ENST00000613670 PCNX1Q96RV3 2341 aa10.61□□□□□ -0.71
LIG1-221ENST00000613670 IRF2P14316 349 aa10.61□□□□□ -0.71
LIG1-221ENST00000613670 HNRNPA3P51991 378 aaKnown RBP10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms