RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-223ENST00000601341 SYNGR2O43760 224 aa9.67□□□□□ -0.86
VRK3-223ENST00000601341 NDUFS6O75380 124 aaKnown RBP9.67□□□□□ -0.86
VRK3-223ENST00000601341 SCAF4O95104 1147 aaKnown RBP9.67□□□□□ -0.86
VRK3-223ENST00000601341 NFYBP25208 207 aa9.67□□□□□ -0.86
VRK3-223ENST00000601341 RAB5BP61020 215 aa9.67□□□□□ -0.86
VRK3-223ENST00000601341 SERF2P84101 59 aa9.67□□□□□ -0.86
VRK3-223ENST00000601341 PMS2P11Q13670 270 aa9.67□□□□□ -0.86
VRK3-223ENST00000601341 AWAT1Q58HT5 328 aa9.67□□□□□ -0.86
VRK3-223ENST00000601341 SOHLH1Q5JUK2 328 aa9.67□□□□□ -0.86
VRK3-223ENST00000601341 SPSB3Q6PJ21 355 aa9.67□□□□□ -0.86
VRK3-223ENST00000601341 RAB1CQ92928 201 aa9.67□□□□□ -0.86
VRK3-223ENST00000601341 TIMD4Q96H15 378 aa9.67□□□□□ -0.86
VRK3-223ENST00000601341 CCL19Q99731 98 aa9.67□□□□□ -0.86
VRK3-223ENST00000601341 CHODLQ9H9P2 273 aa9.67□□□□□ -0.86
VRK3-223ENST00000601341 A0A087WWC5 75 aa9.66□□□□□ -0.86
VRK3-223ENST00000601341 TNFRSF13BO14836 293 aaPredicted RBP9.66□□□□□ -0.86
VRK3-223ENST00000601341 LY6HO94772 140 aa9.66□□□□□ -0.86
VRK3-223ENST00000601341 GLIPR1P48060 266 aa9.66□□□□□ -0.86
VRK3-223ENST00000601341 EDDM3AQ14507 147 aa9.66□□□□□ -0.86
VRK3-223ENST00000601341 KHDC3LQ587J8 217 aa9.66□□□□□ -0.86
VRK3-223ENST00000601341 ZNF506Q5JVG8 444 aa9.66□□□□□ -0.86
VRK3-223ENST00000601341 TRAT1Q6PIZ9 186 aa9.66□□□□□ -0.86
VRK3-223ENST00000601341 FAM216BQ8N7L0 139 aa9.66□□□□□ -0.86
VRK3-223ENST00000601341 IL1F10Q8WWZ1 152 aa9.66□□□□□ -0.86
VRK3-223ENST00000601341 IGFBPL1Q8WX77 278 aa9.66□□□□□ -0.86
VRK3-223ENST00000601341 C14orf79Q96F83 325 aa9.66□□□□□ -0.86
VRK3-223ENST00000601341 PARP12Q9H0J9 701 aaKnown RBP9.66□□□□□ -0.86
VRK3-223ENST00000601341 MAGT1Q9H0U3 335 aa9.66□□□□□ -0.86
VRK3-223ENST00000601341 NCOR1P1Q9H4R4 102 aa9.66□□□□□ -0.86
VRK3-223ENST00000601341 RPS10P5Q9NQ39 176 aa9.66□□□□□ -0.86
VRK3-223ENST00000601341 OR1A1Q9P1Q5 309 aa9.66□□□□□ -0.86
VRK3-223ENST00000601341 KAAG1Q9UBP8 84 aa9.66□□□□□ -0.86
VRK3-223ENST00000601341 USP9YO00507 2555 aaPredicted RBP9.66□□□□□ -0.86
VRK3-223ENST00000601341 CST7O76096 145 aa9.65□□□□□ -0.86
VRK3-223ENST00000601341 LY86O95711 162 aa9.65□□□□□ -0.86
VRK3-223ENST00000601341 IGHV2-70P01814 119 aa9.65□□□□□ -0.86
VRK3-223ENST00000601341 SELLP14151 372 aa9.65□□□□□ -0.86
VRK3-223ENST00000601341 OMGP23515 440 aa9.65□□□□□ -0.86
VRK3-223ENST00000601341 PPP1CCP36873 323 aaKnown RBP9.65□□□□□ -0.86
VRK3-223ENST00000601341 EDDM3BP56851 147 aa9.65□□□□□ -0.86
VRK3-223ENST00000601341 ZNF585BQ52M93 769 aa9.65□□□□□ -0.86
VRK3-223ENST00000601341 ZNF295-AS1Q8N0V1 137 aa9.65□□□□□ -0.86
VRK3-223ENST00000601341 ZNF645Q8N7E2 425 aa9.65□□□□□ -0.86
VRK3-223ENST00000601341 OR51H1Q8NH63 302 aa9.65□□□□□ -0.86
VRK3-223ENST00000601341 RNASE11Q8TAA1 199 aaKnown RBP9.65□□□□□ -0.86
VRK3-223ENST00000601341 GALMQ96C23 342 aa9.65□□□□□ -0.86
VRK3-223ENST00000601341 RAI1Q7Z5J4 1906 aaPredicted RBP9.65□□□□□ -0.86
VRK3-223ENST00000601341 BAHCC1Q9P281 2608 aa9.65□□□□□ -0.86
VRK3-223ENST00000601341 DCHS2Q6V1P9 2916 aa9.65□□□□□ -0.86
VRK3-223ENST00000601341 TRAV39A0A0B4J263 110 aa9.65□□□□□ -0.87
VRK3-223ENST00000601341 A0A0G2JRQ6 117 aa9.65□□□□□ -0.87
VRK3-223ENST00000601341 ODAMA1E959 279 aa9.65□□□□□ -0.87
VRK3-223ENST00000601341 C1orf196B1AJZ1 125 aa9.65□□□□□ -0.87
VRK3-223ENST00000601341 PPIHO43447 177 aaKnown RBP9.65□□□□□ -0.87
VRK3-223ENST00000601341 TNFSF12O43508 249 aa9.65□□□□□ -0.87
VRK3-223ENST00000601341 NDUFB3O43676 98 aa9.65□□□□□ -0.87
VRK3-223ENST00000601341 NDUFS7O75251 213 aa9.65□□□□□ -0.87
VRK3-223ENST00000601341 IGKV1-39P01597 117 aa9.65□□□□□ -0.87
VRK3-223ENST00000601341 IGKV1D-39P04432 117 aa9.65□□□□□ -0.87
VRK3-223ENST00000601341 GZMHP20718 246 aa9.65□□□□□ -0.87
VRK3-223ENST00000601341 LRRC10Q5BKY1 277 aa9.65□□□□□ -0.87
VRK3-223ENST00000601341 DUX4L9Q6RFH8 374 aaPredicted RBP9.65□□□□□ -0.87
VRK3-223ENST00000601341 DRAM1Q8N682 238 aa9.65□□□□□ -0.87
VRK3-223ENST00000601341 TPRX1Q8N7U7 411 aa9.65□□□□□ -0.87
VRK3-223ENST00000601341 HIST1H2BAQ96A08 127 aa9.65□□□□□ -0.87
VRK3-223ENST00000601341 PINX1Q96BK5 328 aaKnown RBP9.65□□□□□ -0.87
VRK3-223ENST00000601341 LURAP1Q96LR2 239 aa9.65□□□□□ -0.87
VRK3-223ENST00000601341 OR6C3Q9NZP0 311 aa9.65□□□□□ -0.87
VRK3-223ENST00000601341 SLC25A10Q9UBX3 287 aaPredicted RBP9.65□□□□□ -0.87
VRK3-223ENST00000601341 CACNG5Q9UF02 275 aa9.65□□□□□ -0.87
VRK3-223ENST00000601341 FBXO7Q9Y3I1 522 aa9.65□□□□□ -0.87
VRK3-223ENST00000601341 USF3Q68DE3 2245 aa9.64□□□□□ -0.87
VRK3-223ENST00000601341 CXorf65A6NEN9 183 aa9.64□□□□□ -0.87
VRK3-223ENST00000601341 IGKV1-5P01602 117 aa9.64□□□□□ -0.87
VRK3-223ENST00000601341 NDUFB7P17568 137 aa9.64□□□□□ -0.87
VRK3-223ENST00000601341 CEACAM6P40199 344 aa9.64□□□□□ -0.87
VRK3-223ENST00000601341 CATR1Q13166 79 aa9.64□□□□□ -0.87
VRK3-223ENST00000601341 EIF4EBP1Q13541 118 aaPredicted RBP9.64□□□□□ -0.87
VRK3-223ENST00000601341 LYPD2Q6UXB3 125 aa9.64□□□□□ -0.87
VRK3-223ENST00000601341 C5orf24Q7Z6I8 188 aa9.64□□□□□ -0.87
VRK3-223ENST00000601341 C1QL4Q86Z23 238 aa9.64□□□□□ -0.87
VRK3-223ENST00000601341 SCGB1C1Q8TD33 95 aa9.64□□□□□ -0.87
VRK3-223ENST00000601341 MRGPRDQ8TDS7 321 aa9.64□□□□□ -0.87
VRK3-223ENST00000601341 MBD3L1Q8WWY6 194 aa9.64□□□□□ -0.87
VRK3-223ENST00000601341 CLCC1Q96S66 551 aa9.64□□□□□ -0.87
VRK3-223ENST00000601341 SAV1Q9H4B6 383 aaPredicted RBP9.64□□□□□ -0.87
VRK3-223ENST00000601341 RBM7Q9Y580 266 aaKnown RBP9.64□□□□□ -0.87
VRK3-223ENST00000601341 TIMM9Q9Y5J7 89 aa9.64□□□□□ -0.87
VRK3-223ENST00000601341 DSCAMO60469 2012 aa9.64□□□□□ -0.87
VRK3-223ENST00000601341 TANC2Q9HCD6 1990 aa9.64□□□□□ -0.87
VRK3-223ENST00000601341 HELZ2Q9BYK8 2649 aaKnown RBP9.63□□□□□ -0.87
VRK3-223ENST00000601341 B4DEV8 164 aa9.63□□□□□ -0.87
VRK3-223ENST00000601341 C12orf77C9JDV5 145 aa9.63□□□□□ -0.87
VRK3-223ENST00000601341 M0R036 132 aa9.63□□□□□ -0.87
VRK3-223ENST00000601341 P0C879 139 aa9.63□□□□□ -0.87
VRK3-223ENST00000601341 COL8A1P27658 744 aa9.63□□□□□ -0.87
VRK3-223ENST00000601341 ATP6V1FQ16864 119 aa9.63□□□□□ -0.87
VRK3-223ENST00000601341 CR1LQ2VPA4 569 aa9.63□□□□□ -0.87
VRK3-223ENST00000601341 LRRC75BQ2VPJ9 315 aa9.63□□□□□ -0.87
VRK3-223ENST00000601341 TMEM155Q4W5P6 130 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms