RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 DYRK1AQ13627 763 aa13.22□□□□□ -0.29
TRIM28-215ENST00000601150 CXorf66Q5JRM2 361 aaPredicted RBP13.22□□□□□ -0.29
TRIM28-215ENST00000601150 CLCC1Q96S66 551 aa13.22□□□□□ -0.29
TRIM28-215ENST00000601150 SLC5A7Q9GZV3 580 aa13.22□□□□□ -0.29
TRIM28-215ENST00000601150 MIXL1Q9H2W2 232 aa13.22□□□□□ -0.29
TRIM28-215ENST00000601150 CCL28Q9NRJ3 127 aa13.22□□□□□ -0.29
TRIM28-215ENST00000601150 FCGR3BO75015 233 aa13.21□□□□□ -0.29
TRIM28-215ENST00000601150 CA2P00918 260 aa13.21□□□□□ -0.29
TRIM28-215ENST00000601150 ELANEP08246 267 aa13.21□□□□□ -0.29
TRIM28-215ENST00000601150 RCVRNP35243 200 aa13.21□□□□□ -0.29
TRIM28-215ENST00000601150 RFX2P48378 723 aa13.21□□□□□ -0.29
TRIM28-215ENST00000601150 HERV-K104P61576 105 aa13.21□□□□□ -0.29
TRIM28-215ENST00000601150 RPL30P62888 115 aaKnown RBP13.21□□□□□ -0.29
TRIM28-215ENST00000601150 NDPQ00604 133 aa13.21□□□□□ -0.29
TRIM28-215ENST00000601150 EIF4EBP1Q13541 118 aaPredicted RBP13.21□□□□□ -0.29
TRIM28-215ENST00000601150 DHRS11Q6UWP2 260 aa13.21□□□□□ -0.29
TRIM28-215ENST00000601150 ZNF562Q6V9R5 426 aa13.21□□□□□ -0.29
TRIM28-215ENST00000601150 ZNF66Q6ZN08 573 aa13.21□□□□□ -0.29
TRIM28-215ENST00000601150 PPP1R27Q86WC6 154 aa13.21□□□□□ -0.29
TRIM28-215ENST00000601150 LYSMD2Q8IV50 215 aa13.21□□□□□ -0.29
TRIM28-215ENST00000601150 RNF152Q8N8N0 203 aa13.21□□□□□ -0.29
TRIM28-215ENST00000601150 ZBTB34Q8NCN2 500 aa13.21□□□□□ -0.29
TRIM28-215ENST00000601150 OSR1Q8TAX0 266 aaPredicted RBP13.21□□□□□ -0.29
TRIM28-215ENST00000601150 ABHD5Q8WTS1 349 aa13.21□□□□□ -0.29
TRIM28-215ENST00000601150 C15orf40Q8WUR7 153 aa13.21□□□□□ -0.29
TRIM28-215ENST00000601150 TCTEX1D2Q8WW35 142 aa13.21□□□□□ -0.29
TRIM28-215ENST00000601150 TPSG1Q9NRR2 321 aa13.21□□□□□ -0.29
TRIM28-215ENST00000601150 TAS2R8Q9NYW2 309 aa13.21□□□□□ -0.29
TRIM28-215ENST00000601150 CEPT1Q9Y6K0 416 aa13.21□□□□□ -0.29
TRIM28-215ENST00000601150 G3V318 75 aa13.2□□□□□ -0.3
TRIM28-215ENST00000601150 CTDSP2O14595 271 aa13.2□□□□□ -0.3
TRIM28-215ENST00000601150 RPLP1P05386 114 aaKnown RBP13.2□□□□□ -0.3
TRIM28-215ENST00000601150 CRYGBP07316 175 aa13.2□□□□□ -0.3
TRIM28-215ENST00000601150 HLA-DMAP28067 261 aa13.2□□□□□ -0.3
TRIM28-215ENST00000601150 PPIFP30405 207 aaKnown RBP13.2□□□□□ -0.3
TRIM28-215ENST00000601150 SLC6A1P30531 599 aa13.2□□□□□ -0.3
TRIM28-215ENST00000601150 HRH1P35367 487 aa13.2□□□□□ -0.3
TRIM28-215ENST00000601150 CRIP2P52943 208 aaPredicted RBP13.2□□□□□ -0.3
TRIM28-215ENST00000601150 VMA21Q3ZAQ7 101 aa13.2□□□□□ -0.3
TRIM28-215ENST00000601150 OR2B11Q5JQS5 317 aa13.2□□□□□ -0.3
TRIM28-215ENST00000601150 LAX1Q8IWV1 398 aa13.2□□□□□ -0.3
TRIM28-215ENST00000601150 MFSD4AQ8N468 514 aa13.2□□□□□ -0.3
TRIM28-215ENST00000601150 BORCS5Q969J3 196 aa13.2□□□□□ -0.3
TRIM28-215ENST00000601150 DCUN1D5Q9BTE7 237 aa13.2□□□□□ -0.3
TRIM28-215ENST00000601150 FBXO7Q9Y3I1 522 aa13.2□□□□□ -0.3
TRIM28-215ENST00000601150 SRRM4A7MD48 611 aaKnown RBP13.19□□□□□ -0.3
TRIM28-215ENST00000601150 NUDT19A8MXV4 375 aa13.19□□□□□ -0.3
TRIM28-215ENST00000601150 PF4P02776 101 aa13.19□□□□□ -0.3
TRIM28-215ENST00000601150 EGR2P11161 476 aaPredicted RBP13.19□□□□□ -0.3
TRIM28-215ENST00000601150 PSMB8P28062 276 aa13.19□□□□□ -0.3
TRIM28-215ENST00000601150 UBE2KP61086 200 aa13.19□□□□□ -0.3
TRIM28-215ENST00000601150 TMEM267Q0VDI3 215 aaPredicted RBP13.19□□□□□ -0.3
TRIM28-215ENST00000601150 ECSCRQ19T08 205 aa13.19□□□□□ -0.3
TRIM28-215ENST00000601150 LCNL1Q6ZST4 164 aa13.19□□□□□ -0.3
TRIM28-215ENST00000601150 TMEM17Q86X19 198 aa13.19□□□□□ -0.3
TRIM28-215ENST00000601150 TCTEX1D1Q8N7M0 179 aa13.19□□□□□ -0.3
TRIM28-215ENST00000601150 TEX45Q8NA69 505 aa13.19□□□□□ -0.3
TRIM28-215ENST00000601150 MINDY2Q8NBR6 621 aa13.19□□□□□ -0.3
TRIM28-215ENST00000601150 KLHL30-AS1Q8NEE0 82 aa13.19□□□□□ -0.3
TRIM28-215ENST00000601150 OR6F1Q8NGZ6 308 aa13.19□□□□□ -0.3
TRIM28-215ENST00000601150 OR4S2Q8NH73 311 aa13.19□□□□□ -0.3
TRIM28-215ENST00000601150 MOB3AQ96BX8 217 aa13.19□□□□□ -0.3
TRIM28-215ENST00000601150 ZNF2Q9BSG1 426 aaPredicted RBP13.19□□□□□ -0.3
TRIM28-215ENST00000601150 NUBP2Q9Y5Y2 271 aa13.19□□□□□ -0.3
TRIM28-215ENST00000601150 A3GALT2U3KPV4 340 aa13.19□□□□□ -0.3
TRIM28-215ENST00000601150 CCDC160A6NGH7 325 aa13.18□□□□□ -0.3
TRIM28-215ENST00000601150 TNFSF12O43508 249 aa13.18□□□□□ -0.3
TRIM28-215ENST00000601150 CNIH1O95406 144 aa13.18□□□□□ -0.3
TRIM28-215ENST00000601150 KIR2DS2P43631 304 aa13.18□□□□□ -0.3
TRIM28-215ENST00000601150 FXYD3Q14802 87 aa13.18□□□□□ -0.3
TRIM28-215ENST00000601150 ACTBL2Q562R1 376 aa13.18□□□□□ -0.3
TRIM28-215ENST00000601150 C19orf54Q5BKX5 351 aa13.18□□□□□ -0.3
TRIM28-215ENST00000601150 RNASE12Q5GAN4 147 aaKnown RBP13.18□□□□□ -0.3
TRIM28-215ENST00000601150 TMEM65Q6PI78 240 aa13.18□□□□□ -0.3
TRIM28-215ENST00000601150 ZNF695Q8IW36 515 aa13.18□□□□□ -0.3
TRIM28-215ENST00000601150 OR52I2Q8NH67 350 aa13.18□□□□□ -0.3
TRIM28-215ENST00000601150 ARPC1AQ92747 370 aa13.18□□□□□ -0.3
TRIM28-215ENST00000601150 ABHD1Q96SE0 405 aa13.18□□□□□ -0.3
TRIM28-215ENST00000601150 GPHA2Q96T91 129 aa13.18□□□□□ -0.3
TRIM28-215ENST00000601150 FOXA2Q9Y261 457 aaPredicted RBP13.18□□□□□ -0.3
TRIM28-215ENST00000601150 A0A1W2PN81 502 aa13.17□□□□□ -0.3
TRIM28-215ENST00000601150 ARPC1BO15143 372 aaKnown RBP13.17□□□□□ -0.3
TRIM28-215ENST00000601150 IGLV1-40P01703 118 aa13.17□□□□□ -0.3
TRIM28-215ENST00000601150 CHRNA7P36544 502 aa13.17□□□□□ -0.3
TRIM28-215ENST00000601150 CDX1P47902 265 aaPredicted RBP13.17□□□□□ -0.3
TRIM28-215ENST00000601150 TSPAN5P62079 268 aa13.17□□□□□ -0.3
TRIM28-215ENST00000601150 GNB1P62873 340 aa13.17□□□□□ -0.3
TRIM28-215ENST00000601150 PJVKQ0ZLH3 352 aa13.17□□□□□ -0.3
TRIM28-215ENST00000601150 CATR1Q13166 79 aa13.17□□□□□ -0.3
TRIM28-215ENST00000601150 AKIRIN2Q53H80 203 aa13.17□□□□□ -0.3
TRIM28-215ENST00000601150 UNQ5815/PRO19632Q6UWF5 114 aa13.17□□□□□ -0.3
TRIM28-215ENST00000601150 ZNF818PQ6ZRF7 136 aa13.17□□□□□ -0.3
TRIM28-215ENST00000601150 C18orf65Q6ZTR6 163 aa13.17□□□□□ -0.3
TRIM28-215ENST00000601150 C8orf86Q6ZUL3 223 aa13.17□□□□□ -0.3
TRIM28-215ENST00000601150 GRPEL2Q8TAA5 225 aa13.17□□□□□ -0.3
TRIM28-215ENST00000601150 FCAMRQ8WWV6 532 aa13.17□□□□□ -0.3
TRIM28-215ENST00000601150 FAM103A1Q9BTL3 118 aaKnown RBP13.17□□□□□ -0.3
TRIM28-215ENST00000601150 SLIRPQ9GZT3 109 aaKnown RBP13.17□□□□□ -0.3
TRIM28-215ENST00000601150 C6orf62Q9GZU0 229 aaPredicted RBP13.17□□□□□ -0.3
TRIM28-215ENST00000601150 KLK11Q9UBX7 282 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms