RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 VMO1Q7Z5L0 202 aa10.21□□□□□ -0.77
UPF1-208ENST00000600012 ODF3L1Q8IXM7 274 aa10.21□□□□□ -0.77
UPF1-208ENST00000600012 ABHD12Q8N2K0 398 aa10.21□□□□□ -0.77
UPF1-208ENST00000600012 PNKDQ8N490 385 aa10.21□□□□□ -0.77
UPF1-208ENST00000600012 PIP4P2Q8N4L2 257 aa10.21□□□□□ -0.77
UPF1-208ENST00000600012 C12orf45Q8N5I9 185 aaPredicted RBP10.21□□□□□ -0.77
UPF1-208ENST00000600012 TP53RKQ96S44 253 aa10.21□□□□□ -0.77
UPF1-208ENST00000600012 CLEC7AQ9BXN2 247 aa10.21□□□□□ -0.77
UPF1-208ENST00000600012 MED28Q9H204 178 aa10.21□□□□□ -0.77
UPF1-208ENST00000600012 C16orf95Q9H693 158 aa10.21□□□□□ -0.77
UPF1-208ENST00000600012 C3orf85A0A1B0GTC6 90 aa10.2□□□□□ -0.78
UPF1-208ENST00000600012 PROP1O75360 226 aa10.2□□□□□ -0.78
UPF1-208ENST00000600012 SLC22A5O76082 557 aa10.2□□□□□ -0.78
UPF1-208ENST00000600012 DUS4LO95620 317 aaKnown RBP10.2□□□□□ -0.78
UPF1-208ENST00000600012 TSPAN15O95858 294 aa10.2□□□□□ -0.78
UPF1-208ENST00000600012 S100GP29377 79 aa10.2□□□□□ -0.78
UPF1-208ENST00000600012 EIF4EBP1Q13541 118 aaPredicted RBP10.2□□□□□ -0.78
UPF1-208ENST00000600012 TMEM187Q14656 261 aa10.2□□□□□ -0.78
UPF1-208ENST00000600012 MSMO1Q15800 293 aa10.2□□□□□ -0.78
UPF1-208ENST00000600012 C2orf68Q2NKX9 166 aa10.2□□□□□ -0.78
UPF1-208ENST00000600012 OR2B11Q5JQS5 317 aa10.2□□□□□ -0.78
UPF1-208ENST00000600012 HCP5Q6MZN7 132 aa10.2□□□□□ -0.78
UPF1-208ENST00000600012 KCTD9Q7L273 389 aa10.2□□□□□ -0.78
UPF1-208ENST00000600012 PDZD9Q8IXQ8 264 aa10.2□□□□□ -0.78
UPF1-208ENST00000600012 LINC00311Q8N616 119 aa10.2□□□□□ -0.78
UPF1-208ENST00000600012 ZBTB34Q8NCN2 500 aa10.2□□□□□ -0.78
UPF1-208ENST00000600012 OR10X1Q8NGY0 326 aa10.2□□□□□ -0.78
UPF1-208ENST00000600012 ZNF596Q8TC21 504 aa10.2□□□□□ -0.78
UPF1-208ENST00000600012 MITD1Q8WV92 249 aa10.2□□□□□ -0.78
UPF1-208ENST00000600012 TCTEX1D2Q8WW35 142 aa10.2□□□□□ -0.78
UPF1-208ENST00000600012 GALNT14Q96FL9 552 aa10.2□□□□□ -0.78
UPF1-208ENST00000600012 METTL8Q9H825 291 aaKnown RBP10.2□□□□□ -0.78
UPF1-208ENST00000600012 VPREB3Q9UKI3 123 aa10.2□□□□□ -0.78
UPF1-208ENST00000600012 A0A1W2PRD5 423 aa10.19□□□□□ -0.78
UPF1-208ENST00000600012 A0A1W2PRF3 423 aa10.19□□□□□ -0.78
UPF1-208ENST00000600012 A0A1W2PRM7 423 aa10.19□□□□□ -0.78
UPF1-208ENST00000600012 HMX3A6NHT5 357 aa10.19□□□□□ -0.78
UPF1-208ENST00000600012 GOSR2O14653 212 aa10.19□□□□□ -0.78
UPF1-208ENST00000600012 TOR1AO14656 332 aa10.19□□□□□ -0.78
UPF1-208ENST00000600012 RAB29O14966 203 aa10.19□□□□□ -0.78
UPF1-208ENST00000600012 TSPAN9O75954 239 aa10.19□□□□□ -0.78
UPF1-208ENST00000600012 ANXA3P12429 323 aa10.19□□□□□ -0.78
UPF1-208ENST00000600012 F2RP25116 425 aa10.19□□□□□ -0.78
UPF1-208ENST00000600012 LINC00205P59089 165 aa10.19□□□□□ -0.78
UPF1-208ENST00000600012 C11orf88Q6PI97 169 aa10.19□□□□□ -0.78
UPF1-208ENST00000600012 C1orf122Q6ZSJ8 110 aa10.19□□□□□ -0.78
UPF1-208ENST00000600012 C8orf31Q8N9H6 132 aa10.19□□□□□ -0.78
UPF1-208ENST00000600012 DRAXINQ8NBI3 349 aaPredicted RBP10.19□□□□□ -0.78
UPF1-208ENST00000600012 ZNF436-AS1Q8NC38 126 aaPredicted RBP10.19□□□□□ -0.78
UPF1-208ENST00000600012 OR11H7Q8NGC8 314 aa10.19□□□□□ -0.78
UPF1-208ENST00000600012 OR13D1Q8NGV5 346 aa10.19□□□□□ -0.78
UPF1-208ENST00000600012 COQ8AQ8NI60 647 aa10.19□□□□□ -0.78
UPF1-208ENST00000600012 CHAC2Q8WUX2 184 aa10.19□□□□□ -0.78
UPF1-208ENST00000600012 TNFRSF14Q92956 283 aa10.19□□□□□ -0.78
UPF1-208ENST00000600012 PHB2Q99623 299 aa10.19□□□□□ -0.78
UPF1-208ENST00000600012 ZNF251Q9BRH9 671 aa10.19□□□□□ -0.78
UPF1-208ENST00000600012 LIN7CQ9NUP9 197 aaKnown RBP10.19□□□□□ -0.78
UPF1-208ENST00000600012 PIPOXQ9P0Z9 390 aa10.19□□□□□ -0.78
UPF1-208ENST00000600012 MGAT4CQ9UBM8 478 aa10.19□□□□□ -0.78
UPF1-208ENST00000600012 KCNIP3Q9Y2W7 256 aa10.19□□□□□ -0.78
UPF1-208ENST00000600012 LINC00473A8K010 186 aa10.18□□□□□ -0.78
UPF1-208ENST00000600012 H0Y980 276 aa10.18□□□□□ -0.78
UPF1-208ENST00000600012 CCSO14618 274 aa10.18□□□□□ -0.78
UPF1-208ENST00000600012 IGLV1-47P01700 117 aa10.18□□□□□ -0.78
UPF1-208ENST00000600012 SULT1A3P0DMM9 295 aa10.18□□□□□ -0.78
UPF1-208ENST00000600012 SULT1A4P0DMN0 295 aa10.18□□□□□ -0.78
UPF1-208ENST00000600012 CXCL3P19876 107 aa10.18□□□□□ -0.78
UPF1-208ENST00000600012 DUTP33316 252 aaKnown RBP10.18□□□□□ -0.78
UPF1-208ENST00000600012 REG1BP48304 166 aa10.18□□□□□ -0.78
UPF1-208ENST00000600012 PRRX1P54821 245 aa10.18□□□□□ -0.78
UPF1-208ENST00000600012 CATR1Q13166 79 aa10.18□□□□□ -0.78
UPF1-208ENST00000600012 DIAPH2-AS1Q14236 149 aa10.18□□□□□ -0.78
UPF1-208ENST00000600012 HLA-DRB5Q30154 266 aa10.18□□□□□ -0.78
UPF1-208ENST00000600012 ZNF66Q6ZN08 573 aa10.18□□□□□ -0.78
UPF1-208ENST00000600012 LIAT1Q6ZQX7 453 aa10.18□□□□□ -0.78
UPF1-208ENST00000600012 C1QL4Q86Z23 238 aa10.18□□□□□ -0.78
UPF1-208ENST00000600012 OR4P4Q8NGL7 312 aa10.18□□□□□ -0.78
UPF1-208ENST00000600012 OR5R1Q8NH85 324 aa10.18□□□□□ -0.78
UPF1-208ENST00000600012 LHFPL5Q8TAF8 219 aa10.18□□□□□ -0.78
UPF1-208ENST00000600012 GLYATL2Q8WU03 294 aa10.18□□□□□ -0.78
UPF1-208ENST00000600012 HEXA-AS1Q9H8Q6 139 aa10.18□□□□□ -0.78
UPF1-208ENST00000600012 GAB2Q9UQC2 676 aa10.18□□□□□ -0.78
UPF1-208ENST00000600012 A0A0B4J2A0 478 aa10.17□□□□□ -0.78
UPF1-208ENST00000600012 RNASEK-C17orf49H0YIS7 233 aa10.17□□□□□ -0.78
UPF1-208ENST00000600012 NPFFO15130 113 aa10.17□□□□□ -0.78
UPF1-208ENST00000600012 ADAP1O75689 374 aa10.17□□□□□ -0.78
UPF1-208ENST00000600012 SIX6O95475 246 aa10.17□□□□□ -0.78
UPF1-208ENST00000600012 ARG1P05089 322 aa10.17□□□□□ -0.78
UPF1-208ENST00000600012 TRAPPC2P0DI81 140 aa10.17□□□□□ -0.78
UPF1-208ENST00000600012 TRAPPC2BP0DI82 140 aa10.17□□□□□ -0.78
UPF1-208ENST00000600012 UCP1P25874 307 aa10.17□□□□□ -0.78
UPF1-208ENST00000600012 IL3RAP26951 378 aa10.17□□□□□ -0.78
UPF1-208ENST00000600012 CD300CQ08708 224 aa10.17□□□□□ -0.78
UPF1-208ENST00000600012 NCR3LG1Q68D85 454 aa10.17□□□□□ -0.78
UPF1-208ENST00000600012 ZNF833PQ6ZTB9 187 aa10.17□□□□□ -0.78
UPF1-208ENST00000600012 AKAP14Q86UN6 197 aa10.17□□□□□ -0.78
UPF1-208ENST00000600012 BEND2Q8NDZ0 799 aa10.17□□□□□ -0.78
UPF1-208ENST00000600012 FAM110DQ8TAY7 271 aaPredicted RBP10.17□□□□□ -0.78
UPF1-208ENST00000600012 RBMXL1Q96E39 390 aaKnown RBP10.17□□□□□ -0.78
UPF1-208ENST00000600012 S1PR3Q99500 378 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms