RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 C18orf12Q96KH6 178 aa12.51□□□□□ -0.41
UPF1-206ENST00000598471 SPIN2AQ99865 258 aa12.51□□□□□ -0.41
UPF1-206ENST00000598471 SPIN2BQ9BPZ2 258 aa12.51□□□□□ -0.41
UPF1-206ENST00000598471 AIFM2Q9BRQ8 373 aa12.51□□□□□ -0.41
UPF1-206ENST00000598471 PDCD10Q9BUL8 212 aa12.51□□□□□ -0.41
UPF1-206ENST00000598471 PLEKHA2Q9HB19 425 aa12.51□□□□□ -0.41
UPF1-206ENST00000598471 WASHC3Q9Y3C0 194 aa12.51□□□□□ -0.41
UPF1-206ENST00000598471 CR1P17927 2039 aa12.5□□□□□ -0.41
UPF1-206ENST00000598471 MYO9AB2RTY4 2548 aa12.5□□□□□ -0.41
UPF1-206ENST00000598471 C5orf51A6NDU8 294 aa12.5□□□□□ -0.41
UPF1-206ENST00000598471 A8MV72 311 aaPredicted RBP12.5□□□□□ -0.41
UPF1-206ENST00000598471 FAM25EA8MYX2 175 aa12.5□□□□□ -0.41
UPF1-206ENST00000598471 H0YJW9 148 aa12.5□□□□□ -0.41
UPF1-206ENST00000598471 RAMP3O60896 148 aa12.5□□□□□ -0.41
UPF1-206ENST00000598471 S1PR2O95136 353 aa12.5□□□□□ -0.41
UPF1-206ENST00000598471 CRYZL1O95825 349 aa12.5□□□□□ -0.41
UPF1-206ENST00000598471 VDAC1P21796 283 aa12.5□□□□□ -0.41
UPF1-206ENST00000598471 LINC00205P59089 165 aa12.5□□□□□ -0.41
UPF1-206ENST00000598471 BPIFB3P59826 476 aa12.5□□□□□ -0.41
UPF1-206ENST00000598471 LYZL2Q7Z4W2 148 aa12.5□□□□□ -0.41
UPF1-206ENST00000598471 LHFPL4Q7Z7J7 247 aa12.5□□□□□ -0.41
UPF1-206ENST00000598471 CIARTQ8N365 385 aaPredicted RBP12.5□□□□□ -0.41
UPF1-206ENST00000598471 OR11H7Q8NGC8 314 aa12.5□□□□□ -0.41
UPF1-206ENST00000598471 LHFPL5Q8TAF8 219 aa12.5□□□□□ -0.41
UPF1-206ENST00000598471 HILPDAQ9Y5L2 63 aa12.5□□□□□ -0.41
UPF1-206ENST00000598471 MED13LQ71F56 2210 aa12.5□□□□□ -0.41
UPF1-206ENST00000598471 C13orf42A0A1B0GVH6 325 aa12.49□□□□□ -0.41
UPF1-206ENST00000598471 A0A1W2PPI3 338 aa12.49□□□□□ -0.41
UPF1-206ENST00000598471 CCSO14618 274 aa12.49□□□□□ -0.41
UPF1-206ENST00000598471 ADAP1O75689 374 aa12.49□□□□□ -0.41
UPF1-206ENST00000598471 HRASP01112 189 aa12.49□□□□□ -0.41
UPF1-206ENST00000598471 NQO2P16083 231 aa12.49□□□□□ -0.41
UPF1-206ENST00000598471 CXCL3P19876 107 aa12.49□□□□□ -0.41
UPF1-206ENST00000598471 CYCSP99999 105 aaKnown RBP12.49□□□□□ -0.41
UPF1-206ENST00000598471 CD83Q01151 205 aa12.49□□□□□ -0.41
UPF1-206ENST00000598471 SSX2Q16385 188 aa12.49□□□□□ -0.41
UPF1-206ENST00000598471 GGNBP1Q5YKI7 109 aa12.49□□□□□ -0.41
UPF1-206ENST00000598471 THOC7Q6I9Y2 204 aaKnown RBP12.49□□□□□ -0.41
UPF1-206ENST00000598471 FAM219AQ8IW50 185 aa12.49□□□□□ -0.41
UPF1-206ENST00000598471 LSM10Q969L4 123 aaKnown RBP12.49□□□□□ -0.41
UPF1-206ENST00000598471 R3HDM4Q96D70 268 aa12.49□□□□□ -0.41
UPF1-206ENST00000598471 ZNF436Q9C0F3 470 aaPredicted RBP12.49□□□□□ -0.41
UPF1-206ENST00000598471 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.48□□□□□ -0.412e-10■■■■□ 22.9
UPF1-206ENST00000598471 WNK2Q9Y3S1 2297 aa12.48□□□□□ -0.41
UPF1-206ENST00000598471 GIPP09681 153 aaPredicted RBP12.48□□□□□ -0.41
UPF1-206ENST00000598471 IGHV4-38-2P0DP08 117 aa12.48□□□□□ -0.41
UPF1-206ENST00000598471 BRS3P32247 399 aa12.48□□□□□ -0.41
UPF1-206ENST00000598471 BRWD1-AS2P59051 145 aa12.48□□□□□ -0.41
UPF1-206ENST00000598471 C2orf68Q2NKX9 166 aa12.48□□□□□ -0.41
UPF1-206ENST00000598471 OR4C13Q8NGP0 309 aa12.48□□□□□ -0.41
UPF1-206ENST00000598471 OSR1Q8TAX0 266 aaPredicted RBP12.48□□□□□ -0.41
UPF1-206ENST00000598471 FLYWCH2Q96CP2 140 aaKnown RBP12.48□□□□□ -0.41
UPF1-206ENST00000598471 TMUB1Q9BVT8 246 aa12.48□□□□□ -0.41
UPF1-206ENST00000598471 IGHV3OR16-10A0A075B7F0 116 aa12.47□□□□□ -0.41
UPF1-206ENST00000598471 TIMM23O14925 209 aa12.47□□□□□ -0.41
UPF1-206ENST00000598471 SHOXO15266 292 aa12.47□□□□□ -0.41
UPF1-206ENST00000598471 CD5LO43866 347 aa12.47□□□□□ -0.41
UPF1-206ENST00000598471 SIX6O95475 246 aa12.47□□□□□ -0.41
UPF1-206ENST00000598471 KRASP01116 189 aa12.47□□□□□ -0.41
UPF1-206ENST00000598471 IGKV1-39P01597 117 aa12.47□□□□□ -0.41
UPF1-206ENST00000598471 IGKV1D-39P04432 117 aa12.47□□□□□ -0.41
UPF1-206ENST00000598471 CD1BP29016 333 aa12.47□□□□□ -0.41
UPF1-206ENST00000598471 RAP2BP61225 183 aa12.47□□□□□ -0.41
UPF1-206ENST00000598471 IAH1Q2TAA2 248 aaPredicted RBP12.47□□□□□ -0.41
UPF1-206ENST00000598471 TMEM177Q53S58 311 aa12.47□□□□□ -0.41
UPF1-206ENST00000598471 LDLRAD2Q5SZI1 272 aa12.47□□□□□ -0.41
UPF1-206ENST00000598471 RUSC1-AS1Q66K80 236 aa12.47□□□□□ -0.41
UPF1-206ENST00000598471 H2BFWTQ7Z2G1 175 aa12.47□□□□□ -0.41
UPF1-206ENST00000598471 DMBX1Q8NFW5 382 aa12.47□□□□□ -0.41
UPF1-206ENST00000598471 NANPQ8TBE9 248 aa12.47□□□□□ -0.41
UPF1-206ENST00000598471 C2orf50Q96LR7 162 aa12.47□□□□□ -0.41
UPF1-206ENST00000598471 HARBI1Q96MB7 349 aa12.47□□□□□ -0.41
UPF1-206ENST00000598471 CHIAQ9BZP6 476 aa12.47□□□□□ -0.41
UPF1-206ENST00000598471 FAM96BQ9Y3D0 163 aa12.47□□□□□ -0.41
UPF1-206ENST00000598471 MMP24Q9Y5R2 645 aa12.47□□□□□ -0.41
UPF1-206ENST00000598471 VPS13CQ709C8 3753 aa12.47□□□□□ -0.41
UPF1-206ENST00000598471 IGHV3-72A0A0B4J1Y9 119 aa12.46□□□□□ -0.41
UPF1-206ENST00000598471 MARCH11A6NNE9 402 aa12.46□□□□□ -0.41
UPF1-206ENST00000598471 AVPP01185 164 aa12.46□□□□□ -0.41
UPF1-206ENST00000598471 SLC25A6P12236 298 aa12.46□□□□□ -0.41
UPF1-206ENST00000598471 CD99P14209 185 aa12.46□□□□□ -0.41
UPF1-206ENST00000598471 G6PCP35575 357 aa12.46□□□□□ -0.41
UPF1-206ENST00000598471 RPS16P62249 146 aaKnown RBP12.46□□□□□ -0.41
UPF1-206ENST00000598471 NMSQ5H8A3 153 aa12.46□□□□□ -0.41
UPF1-206ENST00000598471 BRD3OSQ6XYD6 125 aa12.46□□□□□ -0.41
UPF1-206ENST00000598471 PIP4P2Q8N4L2 257 aa12.46□□□□□ -0.41
UPF1-206ENST00000598471 SEC22AQ96IW7 307 aa12.46□□□□□ -0.41
UPF1-206ENST00000598471 NEURL2Q9BR09 285 aa12.46□□□□□ -0.41
UPF1-206ENST00000598471 MS4A7Q9GZW8 240 aaPredicted RBP12.46□□□□□ -0.41
UPF1-206ENST00000598471 RANBP3Q9H6Z4 567 aaPredicted RBP12.46□□□□□ -0.41
UPF1-206ENST00000598471 NUP50Q9UKX7 468 aa12.46□□□□□ -0.41
UPF1-206ENST00000598471 MAST4O15021 2626 aa12.45□□□□□ -0.42
UPF1-206ENST00000598471 A0A1B0GU03 582 aa12.45□□□□□ -0.42
UPF1-206ENST00000598471 OR2A4O95047 310 aa12.45□□□□□ -0.42
UPF1-206ENST00000598471 VENTXO95231 258 aa12.45□□□□□ -0.42
UPF1-206ENST00000598471 IGKV1-5P01602 117 aa12.45□□□□□ -0.42
UPF1-206ENST00000598471 IGKV1-16P04430 117 aa12.45□□□□□ -0.42
UPF1-206ENST00000598471 FBP1P09467 338 aa12.45□□□□□ -0.42
UPF1-206ENST00000598471 LGALS7P47929 136 aa12.45□□□□□ -0.42
UPF1-206ENST00000598471 H2BFSP57053 126 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms