RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 AKR1C2P52895 323 aa12.35□□□□□ -0.43
TRIM28-209ENST00000597423 CD83Q01151 205 aa12.35□□□□□ -0.43
TRIM28-209ENST00000597423 GGNBP1Q5YKI7 109 aa12.35□□□□□ -0.43
TRIM28-209ENST00000597423 SLC35G3Q8N808 338 aa12.35□□□□□ -0.43
TRIM28-209ENST00000597423 OR4C13Q8NGP0 309 aa12.35□□□□□ -0.43
TRIM28-209ENST00000597423 OSR1Q8TAX0 266 aaPredicted RBP12.35□□□□□ -0.43
TRIM28-209ENST00000597423 C2orf50Q96LR7 162 aa12.35□□□□□ -0.43
TRIM28-209ENST00000597423 RNF5Q99942 180 aa12.35□□□□□ -0.43
TRIM28-209ENST00000597423 ZFP57Q9NU63 452 aa12.35□□□□□ -0.43
TRIM28-209ENST00000597423 CACFD1Q9UGQ2 172 aa12.35□□□□□ -0.43
TRIM28-209ENST00000597423 HILPDAQ9Y5L2 63 aa12.35□□□□□ -0.43
TRIM28-209ENST00000597423 HECTD1Q9ULT8 2610 aa12.35□□□□□ -0.43
TRIM28-209ENST00000597423 H0YJW9 148 aa12.34□□□□□ -0.43
TRIM28-209ENST00000597423 RAMP3O60896 148 aa12.34□□□□□ -0.43
TRIM28-209ENST00000597423 ADAP1O75689 374 aa12.34□□□□□ -0.43
TRIM28-209ENST00000597423 OR2A4O95047 310 aa12.34□□□□□ -0.43
TRIM28-209ENST00000597423 CRYZL1O95825 349 aa12.34□□□□□ -0.43
TRIM28-209ENST00000597423 KRASP01116 189 aa12.34□□□□□ -0.43
TRIM28-209ENST00000597423 SLC25A6P12236 298 aa12.34□□□□□ -0.43
TRIM28-209ENST00000597423 CXCL3P19876 107 aa12.34□□□□□ -0.43
TRIM28-209ENST00000597423 CD1BP29016 333 aa12.34□□□□□ -0.43
TRIM28-209ENST00000597423 BRS3P32247 399 aa12.34□□□□□ -0.43
TRIM28-209ENST00000597423 SSX2Q16385 188 aa12.34□□□□□ -0.43
TRIM28-209ENST00000597423 H2BFWTQ7Z2G1 175 aa12.34□□□□□ -0.43
TRIM28-209ENST00000597423 DMBX1Q8NFW5 382 aa12.34□□□□□ -0.43
TRIM28-209ENST00000597423 NANPQ8TBE9 248 aa12.34□□□□□ -0.43
TRIM28-209ENST00000597423 OR2A7Q96R45 310 aa12.34□□□□□ -0.43
TRIM28-209ENST00000597423 CHIAQ9BZP6 476 aa12.34□□□□□ -0.43
TRIM28-209ENST00000597423 FAM96BQ9Y3D0 163 aa12.34□□□□□ -0.43
TRIM28-209ENST00000597423 MMP24Q9Y5R2 645 aa12.34□□□□□ -0.43
TRIM28-209ENST00000597423 A0A1B0GU03 582 aa12.33□□□□□ -0.44
TRIM28-209ENST00000597423 SHOXO15266 292 aa12.33□□□□□ -0.44
TRIM28-209ENST00000597423 S1PR2O95136 353 aa12.33□□□□□ -0.44
TRIM28-209ENST00000597423 LGALS7P47929 136 aa12.33□□□□□ -0.44
TRIM28-209ENST00000597423 BRWD1-AS2P59051 145 aa12.33□□□□□ -0.44
TRIM28-209ENST00000597423 LINC00205P59089 165 aa12.33□□□□□ -0.44
TRIM28-209ENST00000597423 FGL1Q08830 312 aa12.33□□□□□ -0.44
TRIM28-209ENST00000597423 DIAPH2-AS1Q14236 149 aa12.33□□□□□ -0.44
TRIM28-209ENST00000597423 C2orf68Q2NKX9 166 aa12.33□□□□□ -0.44
TRIM28-209ENST00000597423 IAH1Q2TAA2 248 aaPredicted RBP12.33□□□□□ -0.44
TRIM28-209ENST00000597423 LHFPL5Q8TAF8 219 aa12.33□□□□□ -0.44
TRIM28-209ENST00000597423 R3HDM4Q96D70 268 aa12.33□□□□□ -0.44
TRIM28-209ENST00000597423 NEURL2Q9BR09 285 aa12.33□□□□□ -0.44
TRIM28-209ENST00000597423 NMES1Q9C002 83 aa12.33□□□□□ -0.44
TRIM28-209ENST00000597423 GSKIPQ9P0R6 139 aa12.33□□□□□ -0.44
TRIM28-209ENST00000597423 FAM90A9PA6NNJ1 464 aa12.32□□□□□ -0.44
TRIM28-209ENST00000597423 A8MV72 311 aaPredicted RBP12.32□□□□□ -0.44
TRIM28-209ENST00000597423 SIX6O95475 246 aa12.32□□□□□ -0.44
TRIM28-209ENST00000597423 FAM106CPP0CH98 169 aa12.32□□□□□ -0.44
TRIM28-209ENST00000597423 SAA4P35542 130 aa12.32□□□□□ -0.44
TRIM28-209ENST00000597423 RPS16P62249 146 aaKnown RBP12.32□□□□□ -0.44
TRIM28-209ENST00000597423 SRSF4Q08170 494 aaKnown RBP12.32□□□□□ -0.44
TRIM28-209ENST00000597423 TMEM177Q53S58 311 aa12.32□□□□□ -0.44
TRIM28-209ENST00000597423 LHFPL4Q7Z7J7 247 aa12.32□□□□□ -0.44
TRIM28-209ENST00000597423 TCTE3Q8IZS6 198 aa12.32□□□□□ -0.44
TRIM28-209ENST00000597423 SEC22AQ96IW7 307 aa12.32□□□□□ -0.44
TRIM28-209ENST00000597423 TSNAXQ99598 290 aaKnown RBP12.32□□□□□ -0.44
TRIM28-209ENST00000597423 RANBP3Q9H6Z4 567 aaPredicted RBP12.32□□□□□ -0.44
TRIM28-209ENST00000597423 TRAV40A0A0B4J280 105 aa12.31□□□□□ -0.44
TRIM28-209ENST00000597423 MARCH11A6NNE9 402 aa12.31□□□□□ -0.44
TRIM28-209ENST00000597423 CCSO14618 274 aa12.31□□□□□ -0.44
TRIM28-209ENST00000597423 TIMM23O14925 209 aa12.31□□□□□ -0.44
TRIM28-209ENST00000597423 SNAPC5O75971 98 aa12.31□□□□□ -0.44
TRIM28-209ENST00000597423 IGKV1-39P01597 117 aa12.31□□□□□ -0.44
TRIM28-209ENST00000597423 IGKV1D-39P04432 117 aa12.31□□□□□ -0.44
TRIM28-209ENST00000597423 G6PCP35575 357 aa12.31□□□□□ -0.44
TRIM28-209ENST00000597423 H2BFSP57053 126 aa12.31□□□□□ -0.44
TRIM28-209ENST00000597423 SMCO1Q147U7 214 aa12.31□□□□□ -0.44
TRIM28-209ENST00000597423 NMSQ5H8A3 153 aa12.31□□□□□ -0.44
TRIM28-209ENST00000597423 CIARTQ8N365 385 aaPredicted RBP12.31□□□□□ -0.44
TRIM28-209ENST00000597423 VSTM2AQ8TAG5 236 aa12.31□□□□□ -0.44
TRIM28-209ENST00000597423 GPR146Q96CH1 333 aa12.31□□□□□ -0.44
TRIM28-209ENST00000597423 ST6GAL2Q96JF0 529 aa12.31□□□□□ -0.44
TRIM28-209ENST00000597423 MS4A7Q9GZW8 240 aaPredicted RBP12.31□□□□□ -0.44
TRIM28-209ENST00000597423 RANGRFQ9HD47 186 aaPredicted RBP12.31□□□□□ -0.44
TRIM28-209ENST00000597423 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.31□□□□□ -0.44
TRIM28-209ENST00000597423 ARHGAP32A7KAX9 2087 aa12.31□□□□□ -0.44
TRIM28-209ENST00000597423 PRRC2AP48634 2157 aaKnown RBP12.3□□□□□ -0.44
TRIM28-209ENST00000597423 MED13LQ71F56 2210 aa12.3□□□□□ -0.44
TRIM28-209ENST00000597423 A0A1W2PPI3 338 aa12.3□□□□□ -0.44
TRIM28-209ENST00000597423 MOSP00540 346 aa12.3□□□□□ -0.44
TRIM28-209ENST00000597423 IGKV1-5P01602 117 aa12.3□□□□□ -0.44
TRIM28-209ENST00000597423 RLN2P04090 185 aa12.3□□□□□ -0.44
TRIM28-209ENST00000597423 HABP2Q14520 560 aaPredicted RBP12.3□□□□□ -0.44
TRIM28-209ENST00000597423 POU2AF1Q16633 256 aa12.3□□□□□ -0.44
TRIM28-209ENST00000597423 VMA21Q3ZAQ7 101 aa12.3□□□□□ -0.44
TRIM28-209ENST00000597423 THNSL2Q86YJ6 484 aa12.3□□□□□ -0.44
TRIM28-209ENST00000597423 PIP4P2Q8N4L2 257 aa12.3□□□□□ -0.44
TRIM28-209ENST00000597423 ZBTB8BQ8NAP8 495 aaPredicted RBP12.3□□□□□ -0.44
TRIM28-209ENST00000597423 OR2T35Q8NGX2 323 aa12.3□□□□□ -0.44
TRIM28-209ENST00000597423 OR2T10Q8NGZ9 312 aa12.3□□□□□ -0.44
TRIM28-209ENST00000597423 OR4A16Q8NH70 328 aa12.3□□□□□ -0.44
TRIM28-209ENST00000597423 OR4A5Q8NH83 315 aa12.3□□□□□ -0.44
TRIM28-209ENST00000597423 OR1S1Q8NH92 325 aa12.3□□□□□ -0.44
TRIM28-209ENST00000597423 OR10C1Q96KK4 312 aa12.3□□□□□ -0.44
TRIM28-209ENST00000597423 RHOVQ96L33 236 aa12.3□□□□□ -0.44
TRIM28-209ENST00000597423 HARBI1Q96MB7 349 aa12.3□□□□□ -0.44
TRIM28-209ENST00000597423 COA4Q9NYJ1 87 aa12.3□□□□□ -0.44
TRIM28-209ENST00000597423 NUP50Q9UKX7 468 aa12.3□□□□□ -0.44
TRIM28-209ENST00000597423 IGHV3OR16-10A0A075B7F0 116 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 132.5 ms