RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 OR11H1Q8NG94 326 aa8.11□□□□□ -1.11
LIG1-213ENST00000596672 C4orf3Q8WVX3 66 aa8.11□□□□□ -1.11
LIG1-213ENST00000596672 SDHCQ99643 169 aaPredicted RBP8.11□□□□□ -1.11
LIG1-213ENST00000596672 TOLLIPQ9H0E2 274 aa8.11□□□□□ -1.11
LIG1-213ENST00000596672 CHMP1AQ9HD42 196 aaPredicted RBP8.11□□□□□ -1.11
LIG1-213ENST00000596672 ZNF230Q9UIE0 474 aaPredicted RBP8.11□□□□□ -1.11
LIG1-213ENST00000596672 CSMD3Q7Z407 3707 aa8.1□□□□□ -1.11
LIG1-213ENST00000596672 SRRM4A7MD48 611 aaKnown RBP8.1□□□□□ -1.11
LIG1-213ENST00000596672 MFNGO00587 321 aa8.1□□□□□ -1.11
LIG1-213ENST00000596672 RAB29O14966 203 aa8.1□□□□□ -1.11
LIG1-213ENST00000596672 TMEM127O75204 238 aa8.1□□□□□ -1.11
LIG1-213ENST00000596672 CRYGBP07316 175 aa8.1□□□□□ -1.11
LIG1-213ENST00000596672 GSTT2P0CG29 244 aa8.1□□□□□ -1.11
LIG1-213ENST00000596672 GSTT2BP0CG30 244 aa8.1□□□□□ -1.11
LIG1-213ENST00000596672 VDAC1P21796 283 aa8.1□□□□□ -1.11
LIG1-213ENST00000596672 SLC6A1P30531 599 aa8.1□□□□□ -1.11
LIG1-213ENST00000596672 TALDO1P37837 337 aa8.1□□□□□ -1.11
LIG1-213ENST00000596672 RUNX1Q01196 453 aa8.1□□□□□ -1.11
LIG1-213ENST00000596672 CBX3Q13185 183 aa8.1□□□□□ -1.11
LIG1-213ENST00000596672 ZNF79Q15937 498 aa8.1□□□□□ -1.11
LIG1-213ENST00000596672 FAM71F2Q6NXP2 309 aa8.1□□□□□ -1.11
LIG1-213ENST00000596672 SLC25A38Q96DW6 304 aa8.1□□□□□ -1.11
LIG1-213ENST00000596672 CLCC1Q96S66 551 aa8.1□□□□□ -1.11
LIG1-213ENST00000596672 SRRQ9GZT4 340 aa8.1□□□□□ -1.11
LIG1-213ENST00000596672 RAB9BQ9NP90 201 aa8.1□□□□□ -1.11
LIG1-213ENST00000596672 RDH8Q9NYR8 311 aa8.1□□□□□ -1.11
LIG1-213ENST00000596672 MRPS7Q9Y2R9 242 aaKnown RBP8.1□□□□□ -1.11
LIG1-213ENST00000596672 ETV7Q9Y603 341 aa8.1□□□□□ -1.11
LIG1-213ENST00000596672 PLECQ15149 4684 aaKnown RBP8.1□□□□□ -1.11
LIG1-213ENST00000596672 TENM2Q9NT68 2774 aa8.1□□□□□ -1.11
LIG1-213ENST00000596672 SEC14L6B5MCN3 397 aa8.09□□□□□ -1.11
LIG1-213ENST00000596672 TRDCB7Z8K6 153 aa8.09□□□□□ -1.11
LIG1-213ENST00000596672 UPK1BO75841 260 aa8.09□□□□□ -1.11
LIG1-213ENST00000596672 RGS11O94810 467 aa8.09□□□□□ -1.11
LIG1-213ENST00000596672 FCGR3AP08637 254 aa8.09□□□□□ -1.11
LIG1-213ENST00000596672 GNB3P16520 340 aa8.09□□□□□ -1.11
LIG1-213ENST00000596672 SLURP1P55000 103 aa8.09□□□□□ -1.11
LIG1-213ENST00000596672 BAK1Q16611 211 aa8.09□□□□□ -1.11
LIG1-213ENST00000596672 ECSCRQ19T08 205 aa8.09□□□□□ -1.11
LIG1-213ENST00000596672 MOB1BQ7L9L4 216 aa8.09□□□□□ -1.11
LIG1-213ENST00000596672 OR1N2Q8NGR9 330 aa8.09□□□□□ -1.11
LIG1-213ENST00000596672 OR8U1Q8NH10 309 aa8.09□□□□□ -1.11
LIG1-213ENST00000596672 DCUN1D4Q92564 292 aa8.09□□□□□ -1.11
LIG1-213ENST00000596672 DLX4Q92988 240 aaPredicted RBP8.09□□□□□ -1.11
LIG1-213ENST00000596672 S100A16Q96FQ6 103 aaKnown RBP8.09□□□□□ -1.11
LIG1-213ENST00000596672 UBE2E2Q96LR5 201 aa8.09□□□□□ -1.11
LIG1-213ENST00000596672 CMTM3Q96MX0 182 aa8.09□□□□□ -1.11
LIG1-213ENST00000596672 B9D2Q9BPU9 175 aa8.09□□□□□ -1.11
LIG1-213ENST00000596672 CMSS1Q9BQ75 279 aaKnown RBP8.09□□□□□ -1.11
LIG1-213ENST00000596672 URM1Q9BTM9 101 aaKnown RBP8.09□□□□□ -1.11
LIG1-213ENST00000596672 CABLES2Q9BTV7 478 aa8.09□□□□□ -1.11
LIG1-213ENST00000596672 C12orf4Q9NQ89 552 aa8.09□□□□□ -1.11
LIG1-213ENST00000596672 PIPOXQ9P0Z9 390 aa8.09□□□□□ -1.11
LIG1-213ENST00000596672 IGHV4OR15-8A0A075B7B6 117 aa8.08□□□□□ -1.12
LIG1-213ENST00000596672 A0A087WW49 117 aa8.08□□□□□ -1.12
LIG1-213ENST00000596672 TRBV6-7A0A0A0MS04 114 aa8.08□□□□□ -1.12
LIG1-213ENST00000596672 LINC00854A0A1B0GVQ3 168 aa8.08□□□□□ -1.12
LIG1-213ENST00000596672 FABP7O15540 132 aa8.08□□□□□ -1.12
LIG1-213ENST00000596672 PTBP1P26599 531 aaKnown RBP eCLIP8.08□□□□□ -1.12
LIG1-213ENST00000596672 SCAND1P57086 179 aa8.08□□□□□ -1.12
LIG1-213ENST00000596672 DEFA1P59665 94 aa8.08□□□□□ -1.12
LIG1-213ENST00000596672 DEFA3P59666 94 aa8.08□□□□□ -1.12
LIG1-213ENST00000596672 DGCR2P98153 550 aa8.08□□□□□ -1.12
LIG1-213ENST00000596672 DEFA5Q01523 94 aa8.08□□□□□ -1.12
LIG1-213ENST00000596672 RNASE12Q5GAN4 147 aaKnown RBP8.08□□□□□ -1.12
LIG1-213ENST00000596672 VAX1Q5SQQ9 334 aa8.08□□□□□ -1.12
LIG1-213ENST00000596672 ZNF660Q6AZW8 331 aaPredicted RBP8.08□□□□□ -1.12
LIG1-213ENST00000596672 LYSMD2Q8IV50 215 aa8.08□□□□□ -1.12
LIG1-213ENST00000596672 GDPD1Q8N9F7 314 aa8.08□□□□□ -1.12
LIG1-213ENST00000596672 LFNGQ8NES3 379 aa8.08□□□□□ -1.12
LIG1-213ENST00000596672 OR56B1Q8NGI3 324 aa8.08□□□□□ -1.12
LIG1-213ENST00000596672 OR10R2Q8NGX6 335 aa8.08□□□□□ -1.12
LIG1-213ENST00000596672 ABHD1Q96SE0 405 aa8.08□□□□□ -1.12
LIG1-213ENST00000596672 NEURL2Q9BR09 285 aa8.08□□□□□ -1.12
LIG1-213ENST00000596672 CCDC32Q9BV29 185 aa8.08□□□□□ -1.12
LIG1-213ENST00000596672 GON7Q9BXV9 100 aa8.08□□□□□ -1.12
LIG1-213ENST00000596672 ATG5Q9H1Y0 275 aa8.08□□□□□ -1.12
LIG1-213ENST00000596672 RIMS4Q9H426 269 aaPredicted RBP8.08□□□□□ -1.12
LIG1-213ENST00000596672 SDHAF2Q9NX18 166 aa8.08□□□□□ -1.12
LIG1-213ENST00000596672 RAB22AQ9UL26 194 aa8.08□□□□□ -1.12
LIG1-213ENST00000596672 VSIG4Q9Y279 399 aa8.08□□□□□ -1.12
LIG1-213ENST00000596672 WASHC3Q9Y3C0 194 aa8.08□□□□□ -1.12
LIG1-213ENST00000596672 A0A1W2PN81 502 aa8.07□□□□□ -1.12
LIG1-213ENST00000596672 OR5H14A6NHG9 310 aa8.07□□□□□ -1.12
LIG1-213ENST00000596672 LINC00473A8K010 186 aa8.07□□□□□ -1.12
LIG1-213ENST00000596672 H7C2Y5 167 aa8.07□□□□□ -1.12
LIG1-213ENST00000596672 M0R1X1 148 aa8.07□□□□□ -1.12
LIG1-213ENST00000596672 SLC25A17O43808 307 aa8.07□□□□□ -1.12
LIG1-213ENST00000596672 CA2P00918 260 aa8.07□□□□□ -1.12
LIG1-213ENST00000596672 IGHV3-11P01762 117 aa8.07□□□□□ -1.12
LIG1-213ENST00000596672 OR8U9P0C7N5 309 aa8.07□□□□□ -1.12
LIG1-213ENST00000596672 IL7P13232 177 aa8.07□□□□□ -1.12
LIG1-213ENST00000596672 HIST1H1DP16402 221 aaKnown RBP8.07□□□□□ -1.12
LIG1-213ENST00000596672 ZBTB25P24278 435 aa8.07□□□□□ -1.12
LIG1-213ENST00000596672 CHRNA7P36544 502 aa8.07□□□□□ -1.12
LIG1-213ENST00000596672 ECI1P42126 302 aa8.07□□□□□ -1.12
LIG1-213ENST00000596672 ZNF260Q3ZCT1 412 aa8.07□□□□□ -1.12
LIG1-213ENST00000596672 PYHIN1Q6K0P9 492 aa8.07□□□□□ -1.12
LIG1-213ENST00000596672 HAPLN4Q86UW8 402 aa8.07□□□□□ -1.12
LIG1-213ENST00000596672 PPP1R27Q86WC6 154 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms