RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 SMRP1Q8NCR6 262 aa10.54□□□□□ -0.72
LIG1-207ENST00000594759 FAM234AQ9H0X4 552 aa10.54□□□□□ -0.72
LIG1-207ENST00000594759 FSCN3Q9NQT6 498 aa10.54□□□□□ -0.72
LIG1-207ENST00000594759 CLEC5AQ9NY25 188 aa10.54□□□□□ -0.72
LIG1-207ENST00000594759 IGHV5-51A0A0C4DH38 117 aa10.53□□□□□ -0.72
LIG1-207ENST00000594759 AMY1AP04745 511 aa10.53□□□□□ -0.72
LIG1-207ENST00000594759 SCTP09683 121 aa10.53□□□□□ -0.72
LIG1-207ENST00000594759 PCBD1P61457 104 aa10.53□□□□□ -0.72
LIG1-207ENST00000594759 QRFPP83859 136 aa10.53□□□□□ -0.72
LIG1-207ENST00000594759 TPPP3Q9BW30 176 aa10.53□□□□□ -0.72
LIG1-207ENST00000594759 TRAV9-1A0A075B6T8 112 aa10.53□□□□□ -0.72
LIG1-207ENST00000594759 PGLYRP1O75594 196 aaPredicted RBP10.53□□□□□ -0.72
LIG1-207ENST00000594759 FAM89BQ8N5H3 189 aa10.53□□□□□ -0.72
LIG1-207ENST00000594759 OR4P4Q8NGL7 312 aa10.53□□□□□ -0.72
LIG1-207ENST00000594759 PYGO2Q9BRQ0 406 aa10.53□□□□□ -0.72
LIG1-207ENST00000594759 MUC21A0A0G2JKD1 596 aa10.53□□□□□ -0.72
LIG1-207ENST00000594759 MUC21A0A140T8X8 626 aa10.53□□□□□ -0.72
LIG1-207ENST00000594759 DHHO43323 396 aa10.53□□□□□ -0.72
LIG1-207ENST00000594759 EFEMP2O95967 443 aa10.53□□□□□ -0.72
LIG1-207ENST00000594759 CLEC3BP05452 202 aa10.53□□□□□ -0.72
LIG1-207ENST00000594759 PLGLB1Q02325 96 aa10.53□□□□□ -0.72
LIG1-207ENST00000594759 LTC4SQ16873 150 aa10.53□□□□□ -0.72
LIG1-207ENST00000594759 MUC21Q5SSG8 566 aa10.53□□□□□ -0.72
LIG1-207ENST00000594759 FER1L6-AS1Q8NA97 138 aa10.53□□□□□ -0.72
LIG1-207ENST00000594759 SSMEM1Q8WWF3 244 aa10.53□□□□□ -0.72
LIG1-207ENST00000594759 M0R296 226 aa10.52□□□□□ -0.72
LIG1-207ENST00000594759 NUPR1O60356 82 aa10.52□□□□□ -0.72
LIG1-207ENST00000594759 HLA-DRB1P01911 266 aa10.52□□□□□ -0.72
LIG1-207ENST00000594759 PRSS8Q16651 343 aa10.52□□□□□ -0.72
LIG1-207ENST00000594759 C16orf47Q6ZP98 133 aaPredicted RBP10.52□□□□□ -0.72
LIG1-207ENST00000594759 PRSS3P2Q8NHM4 247 aa10.52□□□□□ -0.72
LIG1-207ENST00000594759 OR2W1Q9Y3N9 320 aa10.52□□□□□ -0.72
LIG1-207ENST00000594759 GPR183P32249 361 aa10.52□□□□□ -0.73
LIG1-207ENST00000594759 CA7P43166 264 aa10.52□□□□□ -0.73
LIG1-207ENST00000594759 RPL31P62899 125 aaKnown RBP10.52□□□□□ -0.73
LIG1-207ENST00000594759 ZNF658BQ4V348 819 aaPredicted RBP10.52□□□□□ -0.73
LIG1-207ENST00000594759 RPP25LQ8N5L8 163 aaKnown RBP10.52□□□□□ -0.73
LIG1-207ENST00000594759 OR10AG1Q8NH19 301 aa10.52□□□□□ -0.73
LIG1-207ENST00000594759 TM4SF19Q96DZ7 209 aa10.52□□□□□ -0.73
LIG1-207ENST00000594759 SCARF2Q96GP6 870 aaPredicted RBP10.52□□□□□ -0.73
LIG1-207ENST00000594759 OR2V2Q96R30 315 aa10.52□□□□□ -0.73
LIG1-207ENST00000594759 SCRT1Q9BWW7 348 aa10.52□□□□□ -0.73
LIG1-207ENST00000594759 UCP1P25874 307 aa10.52□□□□□ -0.73
LIG1-207ENST00000594759 IBA57Q5T440 356 aaKnown RBP10.52□□□□□ -0.73
LIG1-207ENST00000594759 OR1B1Q8NGR6 318 aa10.52□□□□□ -0.73
LIG1-207ENST00000594759 TM2D1Q9BX74 207 aa10.52□□□□□ -0.73
LIG1-207ENST00000594759 COL25A1Q9BXS0 654 aaPredicted RBP10.52□□□□□ -0.73
LIG1-207ENST00000594759 TMEM56-RWDD3S4R434 201 aa10.52□□□□□ -0.73
LIG1-207ENST00000594759 WIPF3A6NGB9 483 aa10.52□□□□□ -0.73
LIG1-207ENST00000594759 LMO7DNF2Z398 122 aa10.52□□□□□ -0.73
LIG1-207ENST00000594759 STAG3L3P0CL85 134 aa10.52□□□□□ -0.73
LIG1-207ENST00000594759 DMWDQ09019 674 aa10.52□□□□□ -0.73
LIG1-207ENST00000594759 PSG5Q15238 335 aa10.52□□□□□ -0.73
LIG1-207ENST00000594759 PQLC2Q6ZP29 291 aa10.52□□□□□ -0.73
LIG1-207ENST00000594759 KCNK17Q96T54 332 aa10.52□□□□□ -0.73
LIG1-207ENST00000594759 DUSP23Q9BVJ7 150 aa10.52□□□□□ -0.73
LIG1-207ENST00000594759 SMIM10L1P0DMW3 83 aa10.51□□□□□ -0.73
LIG1-207ENST00000594759 FOXL2P58012 376 aa10.51□□□□□ -0.73
LIG1-207ENST00000594759 PSG9Q00887 426 aa10.51□□□□□ -0.73
LIG1-207ENST00000594759 C10orf35Q96D05 121 aa10.51□□□□□ -0.73
LIG1-207ENST00000594759 SMIM10Q96HG1 83 aa10.51□□□□□ -0.73
LIG1-207ENST00000594759 IGKV1D-43A0A0B4J1Z2 117 aa10.51□□□□□ -0.73
LIG1-207ENST00000594759 IGHV1OR15-9A0A0B4J2B8 117 aa10.51□□□□□ -0.73
LIG1-207ENST00000594759 PLAURQ03405 335 aa10.51□□□□□ -0.73
LIG1-207ENST00000594759 SRYQ05066 204 aa10.51□□□□□ -0.73
LIG1-207ENST00000594759 SPEM1Q8N4L4 309 aa10.51□□□□□ -0.73
LIG1-207ENST00000594759 OCC1Q8TAD7 63 aa10.51□□□□□ -0.73
LIG1-207ENST00000594759 NAA38Q9BRA0 125 aaKnown RBP10.51□□□□□ -0.73
LIG1-207ENST00000594759 TIMM9Q9Y5J7 89 aa10.51□□□□□ -0.73
LIG1-207ENST00000594759 LHFPL6Q9Y693 200 aa10.51□□□□□ -0.73
LIG1-207ENST00000594759 ACACAQ13085 2346 aa10.51□□□□□ -0.73
LIG1-207ENST00000594759 PHF3Q92576 2039 aaKnown RBP10.51□□□□□ -0.73
LIG1-207ENST00000594759 OR10J3Q5JRS4 329 aa10.51□□□□□ -0.73
LIG1-207ENST00000594759 SAXO1Q8IYX7 474 aa10.51□□□□□ -0.73
LIG1-207ENST00000594759 PIAS2O75928 621 aa10.5□□□□□ -0.73
LIG1-207ENST00000594759 GOSR1O95249 250 aa10.5□□□□□ -0.73
LIG1-207ENST00000594759 ARL14EPLP0DKL9 152 aa10.5□□□□□ -0.73
LIG1-207ENST00000594759 LMO1P25800 156 aa10.5□□□□□ -0.73
LIG1-207ENST00000594759 NPY1RP25929 384 aa10.5□□□□□ -0.73
LIG1-207ENST00000594759 CSN1S1P47710 185 aa10.5□□□□□ -0.73
LIG1-207ENST00000594759 GFRA1P56159 465 aa10.5□□□□□ -0.73
LIG1-207ENST00000594759 ZDHHC23Q8IYP9 409 aa10.5□□□□□ -0.73
LIG1-207ENST00000594759 FAM216AQ8WUB2 273 aa10.5□□□□□ -0.73
LIG1-207ENST00000594759 MTCL1Q9Y4B5 1905 aaKnown RBP10.5□□□□□ -0.73
LIG1-207ENST00000594759 CD1BP29016 333 aa10.5□□□□□ -0.73
LIG1-207ENST00000594759 C9orf135Q5VTT2 229 aa10.5□□□□□ -0.73
LIG1-207ENST00000594759 DOLPP1Q86YN1 238 aa10.5□□□□□ -0.73
LIG1-207ENST00000594759 A0A1B0GX78 115 aa10.5□□□□□ -0.73
LIG1-207ENST00000594759 SCO2A0A1W2PP80 73 aa10.5□□□□□ -0.73
LIG1-207ENST00000594759 KCNMB1Q16558 191 aa10.5□□□□□ -0.73
LIG1-207ENST00000594759 GAB4Q2WGN9 574 aa10.5□□□□□ -0.73
LIG1-207ENST00000594759 OR10G3Q8NGC4 313 aa10.5□□□□□ -0.73
LIG1-207ENST00000594759 OR5A2Q8NGI9 324 aa10.5□□□□□ -0.73
LIG1-207ENST00000594759 ADTRPQ96IZ2 230 aa10.5□□□□□ -0.73
LIG1-207ENST00000594759 GNB1LQ9BYB4 327 aa10.5□□□□□ -0.73
LIG1-207ENST00000594759 STRADBQ9C0K7 418 aa10.5□□□□□ -0.73
LIG1-207ENST00000594759 ST20Q9HBF5 79 aa10.5□□□□□ -0.73
LIG1-207ENST00000594759 KIAA2026Q5HYC2 2103 aa10.49□□□□□ -0.73
LIG1-207ENST00000594759 CD5LO43866 347 aa10.49□□□□□ -0.73
LIG1-207ENST00000594759 RSPO4Q2I0M5 234 aaPredicted RBP10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms