RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 LGALS7P47929 136 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 HERV-K104P61576 105 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 CX3CL1P78423 397 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 RNASE12Q5GAN4 147 aaKnown RBP11.43□□□□□ -0.58
VRK3-206ENST00000594090 LYSMD2Q8IV50 215 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 CLCC1Q96S66 551 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 ABHD1Q96SE0 405 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 SLIRPQ9GZT3 109 aaKnown RBP11.43□□□□□ -0.58
VRK3-206ENST00000594090 RBM38Q9H0Z9 239 aaKnown RBP11.43□□□□□ -0.58
VRK3-206ENST00000594090 CCL28Q9NRJ3 127 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 PRELID3BQ9Y3B1 194 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 FBXO7Q9Y3I1 522 aa11.43□□□□□ -0.58
VRK3-206ENST00000594090 CCDC160A6NGH7 325 aa11.42□□□□□ -0.58
VRK3-206ENST00000594090 SRRM4A7MD48 611 aaKnown RBP11.42□□□□□ -0.58
VRK3-206ENST00000594090 G3V318 75 aa11.42□□□□□ -0.58
VRK3-206ENST00000594090 FCGR3BO75015 233 aa11.42□□□□□ -0.58
VRK3-206ENST00000594090 IGHG4P01861 327 aa11.42□□□□□ -0.58
VRK3-206ENST00000594090 CRYGBP07316 175 aa11.42□□□□□ -0.58
VRK3-206ENST00000594090 CRIP2P52943 208 aaPredicted RBP11.42□□□□□ -0.58
VRK3-206ENST00000594090 RPL23AP62750 156 aaKnown RBP11.42□□□□□ -0.58
VRK3-206ENST00000594090 FOXE3Q13461 319 aa11.42□□□□□ -0.58
VRK3-206ENST00000594090 OR2B11Q5JQS5 317 aa11.42□□□□□ -0.58
VRK3-206ENST00000594090 DHRS11Q6UWP2 260 aa11.42□□□□□ -0.58
VRK3-206ENST00000594090 ZNF66Q6ZN08 573 aa11.42□□□□□ -0.58
VRK3-206ENST00000594090 TMEM17Q86X19 198 aa11.42□□□□□ -0.58
VRK3-206ENST00000594090 RNF152Q8N8N0 203 aa11.42□□□□□ -0.58
VRK3-206ENST00000594090 OSR1Q8TAX0 266 aaPredicted RBP11.42□□□□□ -0.58
VRK3-206ENST00000594090 TCTEX1D2Q8WW35 142 aa11.42□□□□□ -0.58
VRK3-206ENST00000594090 MOB3AQ96BX8 217 aa11.42□□□□□ -0.58
VRK3-206ENST00000594090 GPHA2Q96T91 129 aa11.42□□□□□ -0.58
VRK3-206ENST00000594090 ZNF2Q9BSG1 426 aaPredicted RBP11.42□□□□□ -0.58
VRK3-206ENST00000594090 WSB1Q9Y6I7 421 aa11.42□□□□□ -0.58
VRK3-206ENST00000594090 TRAV41A0A0B4J266 112 aa11.41□□□□□ -0.58
VRK3-206ENST00000594090 TNFSF12O43508 249 aa11.41□□□□□ -0.58
VRK3-206ENST00000594090 ELANEP08246 267 aa11.41□□□□□ -0.58
VRK3-206ENST00000594090 PF4V1P10720 104 aa11.41□□□□□ -0.58
VRK3-206ENST00000594090 PPIFP30405 207 aaKnown RBP11.41□□□□□ -0.58
VRK3-206ENST00000594090 CXorf66Q5JRM2 361 aaPredicted RBP11.41□□□□□ -0.58
VRK3-206ENST00000594090 ZNF562Q6V9R5 426 aa11.41□□□□□ -0.58
VRK3-206ENST00000594090 ZNF818PQ6ZRF7 136 aa11.41□□□□□ -0.58
VRK3-206ENST00000594090 LCNL1Q6ZST4 164 aa11.41□□□□□ -0.58
VRK3-206ENST00000594090 PPP1R27Q86WC6 154 aa11.41□□□□□ -0.58
VRK3-206ENST00000594090 MFSD4AQ8N468 514 aa11.41□□□□□ -0.58
VRK3-206ENST00000594090 ZBTB34Q8NCN2 500 aa11.41□□□□□ -0.58
VRK3-206ENST00000594090 OR52I2Q8NH67 350 aa11.41□□□□□ -0.58
VRK3-206ENST00000594090 OR4S2Q8NH73 311 aa11.41□□□□□ -0.58
VRK3-206ENST00000594090 ABHD5Q8WTS1 349 aa11.41□□□□□ -0.58
VRK3-206ENST00000594090 C15orf40Q8WUR7 153 aa11.41□□□□□ -0.58
VRK3-206ENST00000594090 C6orf62Q9GZU0 229 aaPredicted RBP11.41□□□□□ -0.58
VRK3-206ENST00000594090 FXYD6Q9H0Q3 95 aa11.41□□□□□ -0.58
VRK3-206ENST00000594090 ZFP57Q9NU63 452 aa11.41□□□□□ -0.58
VRK3-206ENST00000594090 RPLP1P05386 114 aaKnown RBP11.4□□□□□ -0.58
VRK3-206ENST00000594090 EGR2P11161 476 aaPredicted RBP11.4□□□□□ -0.58
VRK3-206ENST00000594090 PSMB8P28062 276 aa11.4□□□□□ -0.58
VRK3-206ENST00000594090 UBE2KP61086 200 aa11.4□□□□□ -0.58
VRK3-206ENST00000594090 SSBP2P81877 361 aaPredicted RBP11.4□□□□□ -0.58
VRK3-206ENST00000594090 ECSCRQ19T08 205 aa11.4□□□□□ -0.58
VRK3-206ENST00000594090 VMA21Q3ZAQ7 101 aa11.4□□□□□ -0.58
VRK3-206ENST00000594090 ACTBL2Q562R1 376 aa11.4□□□□□ -0.58
VRK3-206ENST00000594090 C19orf54Q5BKX5 351 aa11.4□□□□□ -0.58
VRK3-206ENST00000594090 C18orf65Q6ZTR6 163 aa11.4□□□□□ -0.58
VRK3-206ENST00000594090 OR6F1Q8NGZ6 308 aa11.4□□□□□ -0.58
VRK3-206ENST00000594090 ARPC1AQ92747 370 aa11.4□□□□□ -0.58
VRK3-206ENST00000594090 DCUN1D5Q9BTE7 237 aa11.4□□□□□ -0.58
VRK3-206ENST00000594090 FAM103A1Q9BTL3 118 aaKnown RBP11.4□□□□□ -0.58
VRK3-206ENST00000594090 NXF2Q9GZY0 626 aaKnown RBP11.4□□□□□ -0.58
VRK3-206ENST00000594090 KLK11Q9UBX7 282 aa11.4□□□□□ -0.58
VRK3-206ENST00000594090 MTFP1Q9UDX5 166 aa11.4□□□□□ -0.58
VRK3-206ENST00000594090 RSL24D1Q9UHA3 163 aaKnown RBP11.4□□□□□ -0.58
VRK3-206ENST00000594090 ARPC1BO15143 372 aaKnown RBP11.39□□□□□ -0.59
VRK3-206ENST00000594090 SAA1P0DJI8 122 aaPredicted RBP11.39□□□□□ -0.59
VRK3-206ENST00000594090 KIR2DS2P43631 304 aa11.39□□□□□ -0.59
VRK3-206ENST00000594090 BRWD1-AS2P59051 145 aa11.39□□□□□ -0.59
VRK3-206ENST00000594090 PJVKQ0ZLH3 352 aa11.39□□□□□ -0.59
VRK3-206ENST00000594090 VAX1Q5SQQ9 334 aa11.39□□□□□ -0.59
VRK3-206ENST00000594090 TEX45Q8NA69 505 aa11.39□□□□□ -0.59
VRK3-206ENST00000594090 KLHL30-AS1Q8NEE0 82 aa11.39□□□□□ -0.59
VRK3-206ENST00000594090 MCFD2Q8NI22 146 aa11.39□□□□□ -0.59
VRK3-206ENST00000594090 FCAMRQ8WWV6 532 aa11.39□□□□□ -0.59
VRK3-206ENST00000594090 BORCS5Q969J3 196 aa11.39□□□□□ -0.59
VRK3-206ENST00000594090 DIRAS2Q96HU8 199 aa11.39□□□□□ -0.59
VRK3-206ENST00000594090 A3GALT2U3KPV4 340 aa11.39□□□□□ -0.59
VRK3-206ENST00000594090 WNK1Q9H4A3 2382 aa11.38□□□□□ -0.59
VRK3-206ENST00000594090 A0A1W2PN81 502 aa11.38□□□□□ -0.59
VRK3-206ENST00000594090 NUDT19A8MXV4 375 aa11.38□□□□□ -0.59
VRK3-206ENST00000594090 GABARAPH6UMI1 98 aa11.38□□□□□ -0.59
VRK3-206ENST00000594090 ZNF701M0R085 212 aaPredicted RBP11.38□□□□□ -0.59
VRK3-206ENST00000594090 IGLV1-40P01703 118 aa11.38□□□□□ -0.59
VRK3-206ENST00000594090 PF4P02776 101 aa11.38□□□□□ -0.59
VRK3-206ENST00000594090 SLC6A1P30531 599 aa11.38□□□□□ -0.59
VRK3-206ENST00000594090 GNRHRP30968 328 aa11.38□□□□□ -0.59
VRK3-206ENST00000594090 CHRNA7P36544 502 aa11.38□□□□□ -0.59
VRK3-206ENST00000594090 TSPAN5P62079 268 aa11.38□□□□□ -0.59
VRK3-206ENST00000594090 GNB1P62873 340 aa11.38□□□□□ -0.59
VRK3-206ENST00000594090 MRPS10P82664 201 aaKnown RBP11.38□□□□□ -0.59
VRK3-206ENST00000594090 DGCR2P98153 550 aa11.38□□□□□ -0.59
VRK3-206ENST00000594090 TMEM267Q0VDI3 215 aaPredicted RBP11.38□□□□□ -0.59
VRK3-206ENST00000594090 CATR1Q13166 79 aa11.38□□□□□ -0.59
VRK3-206ENST00000594090 FXYD3Q14802 87 aa11.38□□□□□ -0.59
VRK3-206ENST00000594090 MRGPRG-AS1Q2M3A8 158 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms