RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 KRTDAPP60985 99 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 FAM213BQ8TBF2 198 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 ASB13Q8WXK3 278 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 LYZL4Q96KX0 146 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 RCL1Q9Y2P8 373 aaKnown RBP8.31□□□□□ -1.08
LIG3-216ENST00000593099 WASHC3Q9Y3C0 194 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 PLXND1Q9Y4D7 1925 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 K7EQM0 130 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 NPY1RP25929 384 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 CD1BP29016 333 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 CLEC12BQ2HXU8 276 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 VAX1Q5SQQ9 334 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 ZNF66Q6ZN08 573 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 OR1L8Q8NGR8 309 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 ZNF418Q8TF45 676 aaPredicted RBP8.31□□□□□ -1.08
LIG3-216ENST00000593099 TMEM186Q96B77 213 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 RHOVQ96L33 236 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 DMRT1Q9Y5R6 373 aa8.31□□□□□ -1.08
LIG3-216ENST00000593099 PRR32B1ATL7 298 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 WISP1O95388 367 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 RBP4P02753 201 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 EFNB1P98172 346 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 LIAT1Q6ZQX7 453 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 BVESQ8NE79 360 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 RNF138Q8WVD3 245 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 CREBBPQ92793 2442 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 TGIF2-C20orf24A0A0A6YYL0 155 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 TAAR5O14804 337 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 UBE2G2P60604 165 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 SLC35B1P78383 322 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 ADIPOQQ15848 244 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 FAM74A1Q5RGS3 127 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 MARVELD3Q96A59 401 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 SLC25A38Q96DW6 304 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 GNPNAT1Q96EK6 184 aaPredicted RBP8.3□□□□□ -1.08
LIG3-216ENST00000593099 SPG11Q96JI7 2443 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 E7EQL1 145 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 HLA-DQB1P01920 261 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 TAS2R45P59539 299 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 EXOSC2Q13868 293 aaKnown RBP8.3□□□□□ -1.08
LIG3-216ENST00000593099 CLLU1Q5K131 121 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 PPP1R1CQ8WVI7 109 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 DPM3Q9P2X0 92 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 MED13Q9UHV7 2174 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 V9GYH0 126 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 HPRT1P00492 218 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 FBP1P09467 338 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 ELLP55199 621 aaPredicted RBP8.3□□□□□ -1.08
LIG3-216ENST00000593099 OR2F1Q13607 317 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 ECSCRQ19T08 205 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 C3orf36Q3SXR2 165 aa8.3□□□□□ -1.08
LIG3-216ENST00000593099 JTBO76095 146 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 TPPP2P59282 170 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 ACOT7LQ6ZUV0 252 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 SLC25A42Q86VD7 318 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 SELENOHQ8IZQ5 122 aaKnown RBP8.29□□□□□ -1.08
LIG3-216ENST00000593099 OR2G3Q8NGZ4 309 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 GAGE10A6NGK3 116 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 HPXP02790 462 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 SSTR5P35346 364 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 LY6EQ16553 131 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 OR10W1Q8NGF6 305 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 RAB24Q969Q5 203 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 NTNG2Q96CW9 530 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 ZNF48Q96MX3 618 aaPredicted RBP8.29□□□□□ -1.08
LIG3-216ENST00000593099 TM2D1Q9BX74 207 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 LINC00312Q9Y6C7 94 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 HGFACQ04756 655 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 NEUROG1Q92886 237 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 SPSB4Q96A44 273 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 YTHDF2Q9Y5A9 579 aaKnown RBP8.29□□□□□ -1.08
LIG3-216ENST00000593099 DBX1A6NMT0 343 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 CEACAM18A8MTB9 384 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 J3QRE1 110 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 OR13C7P0DN81 318 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 ZNF250P15622 560 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 NPBWR1P48145 328 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 RPS11P62280 158 aaKnown RBP eCLIP8.29□□□□□ -1.08
LIG3-216ENST00000593099 FAM219AQ8IW50 185 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 WDFY1Q8IWB7 410 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 OR13C6PQ8NH95 151 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 MRGPRFQ96AM1 343 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 ZNF524Q96C55 264 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 SFRP2Q96HF1 295 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 PNRC2Q9NPJ4 139 aaKnown RBP8.29□□□□□ -1.08
LIG3-216ENST00000593099 SERTAD4Q9NUC0 356 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 FER1L5A0AVI2 2057 aa8.29□□□□□ -1.08
LIG3-216ENST00000593099 MUC22E2RYF6 1773 aaPredicted RBP8.28□□□□□ -1.08
LIG3-216ENST00000593099 HEATR5AQ86XA9 2040 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 LINC00587B1AMM8 73 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 CST7O76096 145 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 GOSR1O95249 250 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 SCGB1C2P0DMR2 95 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 SLC25A16P16260 332 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 IGFBP3P17936 291 aaPredicted RBP8.28□□□□□ -1.08
LIG3-216ENST00000593099 AGAP20933 346 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 RPL27AP46776 148 aaKnown RBP8.28□□□□□ -1.08
LIG3-216ENST00000593099 CSN1S1P47710 185 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 PPOXP50336 477 aa8.28□□□□□ -1.08
LIG3-216ENST00000593099 ASPHD2Q6ICH7 369 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms