RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 DDB2Q92466 427 aa16.26■□□□□ 0.19
CLIP3-206ENST00000593074 TLN1Q9Y490 2541 aaKnown RBP16.26■□□□□ 0.19
CLIP3-206ENST00000593074 DYSFO75923 2080 aa16.25■□□□□ 0.19
CLIP3-206ENST00000593074 KIR2DS2P43631 304 aa16.25■□□□□ 0.19
CLIP3-206ENST00000593074 OR8G2PQ6IF36 304 aa16.25■□□□□ 0.19
CLIP3-206ENST00000593074 TAF15Q92804 592 aaKnown RBP eCLIP16.25■□□□□ 0.19
CLIP3-206ENST00000593074 RPRMQ9NS64 109 aa16.25■□□□□ 0.19
CLIP3-206ENST00000593074 UBE2L5PA0A1B0GUS4 154 aa16.25■□□□□ 0.19
CLIP3-206ENST00000593074 ZNF729A6NN14 1252 aaPredicted RBP16.25■□□□□ 0.19
CLIP3-206ENST00000593074 IGHV3-7P01780 117 aa16.25■□□□□ 0.19
CLIP3-206ENST00000593074 OR9G9P0C7N8 305 aa16.25■□□□□ 0.19
CLIP3-206ENST00000593074 RAB2AP61019 212 aa16.25■□□□□ 0.19
CLIP3-206ENST00000593074 ATP6V1FQ16864 119 aa16.25■□□□□ 0.19
CLIP3-206ENST00000593074 TMEM30BQ3MIR4 351 aa16.25■□□□□ 0.19
CLIP3-206ENST00000593074 CT45A1Q5HYN5 189 aa16.25■□□□□ 0.19
CLIP3-206ENST00000593074 ZNF439Q8NDP4 499 aa16.25■□□□□ 0.19
CLIP3-206ENST00000593074 CT45A3Q8NHU0 189 aa16.25■□□□□ 0.19
CLIP3-206ENST00000593074 CORO2AQ92828 525 aa16.25■□□□□ 0.19
CLIP3-206ENST00000593074 PRELID3BQ9Y3B1 194 aa16.25■□□□□ 0.19
CLIP3-206ENST00000593074 TIMM9Q9Y5J7 89 aa16.25■□□□□ 0.19
CLIP3-206ENST00000593074 IGF2RP11717 2491 aa16.24■□□□□ 0.19
CLIP3-206ENST00000593074 RBMXL2O75526 392 aaKnown RBP16.24■□□□□ 0.19
CLIP3-206ENST00000593074 NCMAPQ5T1S8 102 aa16.24■□□□□ 0.19
CLIP3-206ENST00000593074 C1orf229Q6ZS94 237 aaPredicted RBP16.24■□□□□ 0.19
CLIP3-206ENST00000593074 LEAP2Q969E1 77 aa16.24■□□□□ 0.19
CLIP3-206ENST00000593074 QTRT1Q9BXR0 403 aaKnown RBP16.24■□□□□ 0.19
CLIP3-206ENST00000593074 CCL21O00585 134 aa16.23■□□□□ 0.19
CLIP3-206ENST00000593074 AWAT1Q58HT5 328 aa16.23■□□□□ 0.19
CLIP3-206ENST00000593074 ZNF506Q5JVG8 444 aa16.23■□□□□ 0.19
CLIP3-206ENST00000593074 CENPVQ7Z7K6 275 aaPredicted RBP16.23■□□□□ 0.19
CLIP3-206ENST00000593074 CLDND2Q8NHS1 167 aa16.23■□□□□ 0.19
CLIP3-206ENST00000593074 PINX1Q96BK5 328 aaKnown RBP16.23■□□□□ 0.19
CLIP3-206ENST00000593074 S1PR3Q99500 378 aa16.23■□□□□ 0.19
CLIP3-206ENST00000593074 TMEM147Q9BVK8 224 aa16.23■□□□□ 0.19
CLIP3-206ENST00000593074 VSIRQ9H7M9 311 aa16.23■□□□□ 0.19
CLIP3-206ENST00000593074 ICE1Q9Y2F5 2266 aa16.23■□□□□ 0.19
CLIP3-206ENST00000593074 SAA2-SAA4A0A096LPE2 208 aa16.23■□□□□ 0.19
CLIP3-206ENST00000593074 CEBPZOSA8MTT3 80 aa16.23■□□□□ 0.19
CLIP3-206ENST00000593074 SAA2P0DJI9 122 aaPredicted RBP16.23■□□□□ 0.19
CLIP3-206ENST00000593074 TLE1Q04724 770 aa16.23■□□□□ 0.19
CLIP3-206ENST00000593074 EGLN1Q9GZT9 426 aa16.23■□□□□ 0.19
CLIP3-206ENST00000593074 IDI2-AS1Q9NZ38 188 aa16.23■□□□□ 0.19
CLIP3-206ENST00000593074 PCNX1Q96RV3 2341 aa16.22■□□□□ 0.19
CLIP3-206ENST00000593074 NKX6-3A6NJ46 265 aa16.22■□□□□ 0.19
CLIP3-206ENST00000593074 SCAF4O95104 1147 aaKnown RBP16.22■□□□□ 0.19
CLIP3-206ENST00000593074 LY86O95711 162 aa16.22■□□□□ 0.19
CLIP3-206ENST00000593074 HSPB1P04792 205 aaKnown RBP16.22■□□□□ 0.19
CLIP3-206ENST00000593074 C1QTNF9P0C862 333 aa16.22■□□□□ 0.19
CLIP3-206ENST00000593074 OR13C7P0DN81 318 aa16.22■□□□□ 0.19
CLIP3-206ENST00000593074 PAX6P26367 422 aa16.22■□□□□ 0.19
CLIP3-206ENST00000593074 OR2B8PP59922 312 aa16.22■□□□□ 0.19
CLIP3-206ENST00000593074 ICAM4Q14773 271 aa16.22■□□□□ 0.19
CLIP3-206ENST00000593074 ZNF726P1Q15940 193 aa16.22■□□□□ 0.19
CLIP3-206ENST00000593074 VWC2Q2TAL6 325 aa16.22■□□□□ 0.19
CLIP3-206ENST00000593074 PDLIM3Q53GG5 364 aaPredicted RBP16.22■□□□□ 0.19
CLIP3-206ENST00000593074 TMEM41BQ5BJD5 291 aa16.22■□□□□ 0.19
CLIP3-206ENST00000593074 PRAMEF5Q5TYX0 476 aa16.22■□□□□ 0.19
CLIP3-206ENST00000593074 ETV3LQ6ZN32 361 aa16.22■□□□□ 0.19
CLIP3-206ENST00000593074 ZCCHC24Q8N2G6 241 aaKnown RBP16.22■□□□□ 0.19
CLIP3-206ENST00000593074 OR10P1Q8NGE3 313 aa16.22■□□□□ 0.19
CLIP3-206ENST00000593074 MBD3L1Q8WWY6 194 aa16.22■□□□□ 0.19
CLIP3-206ENST00000593074 ZNF251Q9BRH9 671 aa16.22■□□□□ 0.19
CLIP3-206ENST00000593074 AIFM2Q9BRQ8 373 aa16.22■□□□□ 0.19
CLIP3-206ENST00000593074 SHISA9B4DS77 424 aa16.22■□□□□ 0.19
CLIP3-206ENST00000593074 NQO2P16083 231 aa16.22■□□□□ 0.19
CLIP3-206ENST00000593074 CHRNB4P30926 498 aa16.22■□□□□ 0.19
CLIP3-206ENST00000593074 ERVK-16P61578 105 aa16.22■□□□□ 0.19
CLIP3-206ENST00000593074 HAGHQ16775 308 aa16.22■□□□□ 0.19
CLIP3-206ENST00000593074 OR4S2Q8NH73 311 aa16.22■□□□□ 0.19
CLIP3-206ENST00000593074 RCC1LQ96I51 464 aaKnown RBP16.22■□□□□ 0.19
CLIP3-206ENST00000593074 SAP30LQ9HAJ7 183 aa16.22■□□□□ 0.19
CLIP3-206ENST00000593074 SMCO4Q9NRQ5 59 aa16.22■□□□□ 0.19
CLIP3-206ENST00000593074 TRAV38-1A0A0B4J264 116 aa16.21■□□□□ 0.19
CLIP3-206ENST00000593074 GNB2P62879 340 aa16.21■□□□□ 0.19
CLIP3-206ENST00000593074 SOHLH1Q5JUK2 328 aa16.21■□□□□ 0.19
CLIP3-206ENST00000593074 OR52E5Q8NH55 327 aa16.21■□□□□ 0.19
CLIP3-206ENST00000593074 LINC00312Q9Y6C7 94 aa16.21■□□□□ 0.19
CLIP3-206ENST00000593074 FAM90A27PA6NNH2 459 aa16.2■□□□□ 0.18
CLIP3-206ENST00000593074 C15orf62A8K5M9 175 aa16.2■□□□□ 0.18
CLIP3-206ENST00000593074 E7EQL1 145 aa16.2■□□□□ 0.18
CLIP3-206ENST00000593074 H7C2Y5 167 aa16.2■□□□□ 0.18
CLIP3-206ENST00000593074 TMPRSS2O15393 492 aa16.2■□□□□ 0.18
CLIP3-206ENST00000593074 ARG1P05089 322 aa16.2■□□□□ 0.18
CLIP3-206ENST00000593074 SRP19P09132 144 aaKnown RBP16.2■□□□□ 0.18
CLIP3-206ENST00000593074 SPCS3P61009 180 aa16.2■□□□□ 0.18
CLIP3-206ENST00000593074 FBXL19-AS1Q494R0 122 aa16.2■□□□□ 0.18
CLIP3-206ENST00000593074 SMUG1Q53HV7 270 aa16.2■□□□□ 0.18
CLIP3-206ENST00000593074 SPINK9Q5DT21 86 aa16.2■□□□□ 0.18
CLIP3-206ENST00000593074 DMRTC2Q8IXT2 367 aaPredicted RBP16.2■□□□□ 0.18
CLIP3-206ENST00000593074 UNKLQ9H9P5 680 aaKnown RBP16.2■□□□□ 0.18
CLIP3-206ENST00000593074 RPUSD1Q9UJJ7 312 aaKnown RBP16.2■□□□□ 0.18
CLIP3-206ENST00000593074 A0A1W2PPE3 182 aa16.2■□□□□ 0.18
CLIP3-206ENST00000593074 C7orf77A4D0Y5 90 aa16.2■□□□□ 0.18
CLIP3-206ENST00000593074 CD3EP07766 207 aa16.2■□□□□ 0.18
CLIP3-206ENST00000593074 THBS3P49746 956 aa16.2■□□□□ 0.18
CLIP3-206ENST00000593074 RELBQ01201 579 aa16.2■□□□□ 0.18
CLIP3-206ENST00000593074 RHEBQ15382 184 aa16.2■□□□□ 0.18
CLIP3-206ENST00000593074 KHDC3LQ587J8 217 aa16.2■□□□□ 0.18
CLIP3-206ENST00000593074 SSX9Q7RTT3 188 aa16.2■□□□□ 0.18
CLIP3-206ENST00000593074 SSX7Q7RTT5 188 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms