RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 J3QKU1 62 aa1.54□□□□□ -2.16
SMCHD1-209ENST00000583441 CXCR6O00574 342 aa1.54□□□□□ -2.16
SMCHD1-209ENST00000583441 KRT75O95678 551 aa1.54□□□□□ -2.16
SMCHD1-209ENST00000583441 RPL12P30050 165 aaKnown RBP1.54□□□□□ -2.16
SMCHD1-209ENST00000583441 ZNF140P52738 457 aaPredicted RBP1.54□□□□□ -2.16
SMCHD1-209ENST00000583441 CTBP2P56545 445 aa1.54□□□□□ -2.16
SMCHD1-209ENST00000583441 FXYD7P58549 80 aa1.54□□□□□ -2.16
SMCHD1-209ENST00000583441 TAS2R20P59543 309 aa1.54□□□□□ -2.16
SMCHD1-209ENST00000583441 CLVS2Q5SYC1 327 aa1.54□□□□□ -2.16
SMCHD1-209ENST00000583441 AGTRAPQ6RW13 159 aa1.54□□□□□ -2.16
SMCHD1-209ENST00000583441 SBSNQ6UWP8 590 aa1.54□□□□□ -2.16
SMCHD1-209ENST00000583441 C2orf91Q6ZV80 131 aa1.54□□□□□ -2.16
SMCHD1-209ENST00000583441 SLC35F6Q8N357 371 aa1.54□□□□□ -2.16
SMCHD1-209ENST00000583441 UBL4BQ8N7F7 174 aa1.54□□□□□ -2.16
SMCHD1-209ENST00000583441 RPS4Y2Q8TD47 263 aa1.54□□□□□ -2.16
SMCHD1-209ENST00000583441 HAVCR2Q8TDQ0 301 aa1.54□□□□□ -2.16
SMCHD1-209ENST00000583441 SMCR5Q8TEV8 140 aa1.54□□□□□ -2.16
SMCHD1-209ENST00000583441 EEF1AKMT1Q8WVE0 214 aa1.54□□□□□ -2.16
SMCHD1-209ENST00000583441 ARL5BQ96KC2 179 aa1.54□□□□□ -2.16
SMCHD1-209ENST00000583441 KLF6Q99612 283 aaPredicted RBP1.54□□□□□ -2.16
SMCHD1-209ENST00000583441 C3orf18Q9UK00 162 aa1.54□□□□□ -2.16
SMCHD1-209ENST00000583441 POLR3HQ9Y535 204 aaPredicted RBP1.54□□□□□ -2.16
SMCHD1-209ENST00000583441 KMT2EQ8IZD2 1858 aa1.54□□□□□ -2.16
SMCHD1-209ENST00000583441 A0A087WUU8 490 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 TMED7-TICAM2A0A0A6YYA0 188 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 ACOX3O15254 700 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 ISG15P05161 165 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 ZNF728P0DKX0 622 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 IFI30P13284 250 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 ALOX5APP20292 161 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 KRTAP12-4P60329 112 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 ZNF90Q03938 601 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 LGALS9BQ3B8N2 356 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 C9orf84Q5VXU9 1444 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 C5orf46Q6UWT4 87 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 Q6ZS52 159 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 RASSF6Q6ZTQ3 369 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 HIST2H3AQ71DI3 136 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 SPATA12Q7Z6I5 190 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 COMMD7Q86VX2 200 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 LHFPL1Q86WI0 220 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 TMEM161BQ8NDZ6 487 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 OR13C8Q8NGS7 320 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 OR5J2Q8NH18 312 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 RNF133Q8WVZ7 376 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 FGF13Q92913 245 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 RAB8BQ92930 207 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 TESCQ96BS2 214 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 SFRP2Q96HF1 295 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 ATAD5Q96QE3 1844 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 CCL13Q99616 98 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 MAP3K5Q99683 1374 aa1.53□□□□□ -2.16
SMCHD1-209ENST00000583441 GRIN2BQ13224 1484 aa1.52□□□□□ -2.17
SMCHD1-209ENST00000583441 TRGV5A0A0B4J1U4 118 aa1.52□□□□□ -2.17
SMCHD1-209ENST00000583441 TXNDC9O14530 226 aa1.52□□□□□ -2.17
SMCHD1-209ENST00000583441 DCTN3O75935 186 aa1.52□□□□□ -2.17
SMCHD1-209ENST00000583441 IGKV1-16P04430 117 aa1.52□□□□□ -2.17
SMCHD1-209ENST00000583441 UCHL3P15374 230 aa1.52□□□□□ -2.17
SMCHD1-209ENST00000583441 PSMD8P48556 350 aa1.52□□□□□ -2.17
SMCHD1-209ENST00000583441 HINT1P49773 126 aaPredicted RBP1.52□□□□□ -2.17
SMCHD1-209ENST00000583441 AP2S1P53680 142 aaPredicted RBP1.52□□□□□ -2.17
SMCHD1-209ENST00000583441 RELAQ04206 551 aa1.52□□□□□ -2.17
SMCHD1-209ENST00000583441 AKR1C1Q04828 323 aa1.52□□□□□ -2.17
SMCHD1-209ENST00000583441 LPCAT4Q643R3 524 aa1.52□□□□□ -2.17
SMCHD1-209ENST00000583441 C10orf67Q8IYJ2 551 aa1.52□□□□□ -2.17
SMCHD1-209ENST00000583441 OR4X2Q8NGF9 303 aa1.52□□□□□ -2.17
SMCHD1-209ENST00000583441 GNPNAT1Q96EK6 184 aaPredicted RBP1.52□□□□□ -2.17
SMCHD1-209ENST00000583441 TAAR3PQ9P1P4 343 aa1.52□□□□□ -2.17
SMCHD1-209ENST00000583441 AK3Q9UIJ7 227 aa1.52□□□□□ -2.17
SMCHD1-209ENST00000583441 THSD7AQ9UPZ6 1657 aa1.51□□□□□ -2.17
SMCHD1-209ENST00000583441 PLCH2O75038 1416 aa1.51□□□□□ -2.17
SMCHD1-209ENST00000583441 IGLV3-9A0A075B6K5 115 aa1.51□□□□□ -2.17
SMCHD1-209ENST00000583441 IGHV1-69-2A0A0G2JMI3 117 aa1.51□□□□□ -2.17
SMCHD1-209ENST00000583441 BHLHE40O14503 412 aa1.51□□□□□ -2.17
SMCHD1-209ENST00000583441 OVOL1O14753 267 aa1.51□□□□□ -2.17
SMCHD1-209ENST00000583441 SLCO1A2P46721 670 aa1.51□□□□□ -2.17
SMCHD1-209ENST00000583441 CDK9P50750 372 aaKnown RBP1.51□□□□□ -2.17
SMCHD1-209ENST00000583441 AP1S1P61966 158 aa1.51□□□□□ -2.17
SMCHD1-209ENST00000583441 POLR2GP62487 172 aaKnown RBP eCLIP1.51□□□□□ -2.17
SMCHD1-209ENST00000583441 DEFB103AP81534 67 aa1.51□□□□□ -2.17
SMCHD1-209ENST00000583441 CDKL4Q5MAI5 379 aa1.51□□□□□ -2.17
SMCHD1-209ENST00000583441 CD200R1LQ6Q8B3 271 aa1.51□□□□□ -2.17
SMCHD1-209ENST00000583441 Q6ZTI0 123 aa1.51□□□□□ -2.17
SMCHD1-209ENST00000583441 GPHB5Q86YW7 130 aa1.51□□□□□ -2.17
SMCHD1-209ENST00000583441 OR2T27Q8NH04 317 aa1.51□□□□□ -2.17
SMCHD1-209ENST00000583441 RAB2BQ8WUD1 216 aa1.51□□□□□ -2.17
SMCHD1-209ENST00000583441 MRPS26Q9BYN8 205 aaKnown RBP1.51□□□□□ -2.17
SMCHD1-209ENST00000583441 PARVGQ9HBI0 331 aa1.51□□□□□ -2.17
SMCHD1-209ENST00000583441 HRASLSQ9HDD0 168 aa1.51□□□□□ -2.17
SMCHD1-209ENST00000583441 GPR84Q9NQS5 396 aa1.51□□□□□ -2.17
SMCHD1-209ENST00000583441 PRO2289Q9P1D8 64 aa1.51□□□□□ -2.17
SMCHD1-209ENST00000583441 LCTP09848 1927 aa1.5□□□□□ -2.17
SMCHD1-209ENST00000583441 NUP160Q12769 1436 aa1.5□□□□□ -2.17
SMCHD1-209ENST00000583441 KIF15Q9NS87 1388 aa1.5□□□□□ -2.17
SMCHD1-209ENST00000583441 IGHV3-64A0A075B6Q5 118 aa1.5□□□□□ -2.17
SMCHD1-209ENST00000583441 TRAV41A0A0B4J266 112 aa1.5□□□□□ -2.17
SMCHD1-209ENST00000583441 A0A1B0GV50 99 aa1.5□□□□□ -2.17
SMCHD1-209ENST00000583441 ARRDC5A6NEK1 342 aa1.5□□□□□ -2.17
SMCHD1-209ENST00000583441 SMIM23A6NLE4 172 aa1.5□□□□□ -2.17
SMCHD1-209ENST00000583441 C21orf140B9A014 251 aa1.5□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms