RNA–Protein interactions for RNA: ENST00000581383.1

SMCHD1-205, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 806 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-205ENST00000581383 PUS1Q9Y606 427 aaKnown RBP eCLIP1.9□□□□□ -2.11
SMCHD1-205ENST00000581383 PTPN23Q9H3S7 1636 aa1.9□□□□□ -2.11
SMCHD1-205ENST00000581383 EFCAB6Q5THR3 1501 aa1.9□□□□□ -2.11
SMCHD1-205ENST00000581383 DUOX2Q9NRD8 1548 aa1.9□□□□□ -2.11
SMCHD1-205ENST00000581383 RTEL1-TNFRSF6BF6WH68 1400 aa1.9□□□□□ -2.11
SMCHD1-205ENST00000581383 ERBINQ96RT1 1412 aa1.9□□□□□ -2.11
SMCHD1-205ENST00000581383 STRCP1A6NGW2 1772 aa1.9□□□□□ -2.11
SMCHD1-205ENST00000581383 RAD50Q92878 1312 aa1.9□□□□□ -2.11
SMCHD1-205ENST00000581383 ZC3H13Q5T200 1668 aaKnown RBP1.9□□□□□ -2.11
SMCHD1-205ENST00000581383 MED14O60244 1454 aa1.89□□□□□ -2.11
SMCHD1-205ENST00000581383 ARHGAP32A7KAX9 2087 aa1.89□□□□□ -2.11
SMCHD1-205ENST00000581383 MPDZO75970 2070 aa1.89□□□□□ -2.11
SMCHD1-205ENST00000581383 POLR1AO95602 1720 aaPredicted RBP1.89□□□□□ -2.11
SMCHD1-205ENST00000581383 TMEM2Q9UHN6 1383 aa1.89□□□□□ -2.11
SMCHD1-205ENST00000581383 KNCNA6PVL3 124 aa1.89□□□□□ -2.11
SMCHD1-205ENST00000581383 ATP5G1P05496 136 aa1.89□□□□□ -2.11
SMCHD1-205ENST00000581383 CDK9P50750 372 aaKnown RBP1.89□□□□□ -2.11
SMCHD1-205ENST00000581383 SS18Q15532 418 aa1.89□□□□□ -2.11
SMCHD1-205ENST00000581383 LRRC26Q2I0M4 334 aa1.89□□□□□ -2.11
SMCHD1-205ENST00000581383 DNM1P34Q6PK57 102 aa1.89□□□□□ -2.11
SMCHD1-205ENST00000581383 CD302Q8IX05 232 aa1.89□□□□□ -2.11
SMCHD1-205ENST00000581383 PSORS1C2Q9UIG4 136 aa1.89□□□□□ -2.11
SMCHD1-205ENST00000581383 HHLA2Q9UM44 414 aa1.89□□□□□ -2.11
SMCHD1-205ENST00000581383 HDGFL3Q9Y3E1 203 aa1.89□□□□□ -2.11
SMCHD1-205ENST00000581383 SLIT1O75093 1534 aa1.89□□□□□ -2.11
SMCHD1-205ENST00000581383 RGS12O14924 1447 aa1.89□□□□□ -2.11
SMCHD1-205ENST00000581383 CROCC2H7BZ55 1655 aa1.89□□□□□ -2.11
SMCHD1-205ENST00000581383 NWD1Q149M9 1564 aa1.89□□□□□ -2.11
SMCHD1-205ENST00000581383 UBR1Q8IWV7 1749 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 DEPDC5O75140 1603 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 EIF2AK4Q9P2K8 1649 aaKnown RBP1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 SLIT2O94813 1529 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 LMTK2Q8IWU2 1503 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 ROBO1Q9Y6N7 1651 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 UBFD1O14562 309 aaKnown RBP1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 HPGDSO60760 199 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 CXCL2P19875 107 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 CXCL3P19876 107 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 NPPCP23582 126 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 CRHBPP24387 322 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 CRYBB3P26998 211 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 CD40LGP29965 261 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 SERPINB10P48595 397 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 HPCAP84074 193 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 HES1Q14469 280 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 LGALS9CQ6DKI2 356 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 DRAM2Q6UX65 266 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 PLEKHG7Q6ZR37 379 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 Q8NDZ9 215 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 OR10D3Q8NH80 312 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 SLC37A2Q8TED4 501 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 DNAJC30Q96LL9 226 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 MBOAT7Q96N66 472 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 TXNDC17Q9BRA2 123 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 TIPINQ9BVW5 301 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 TTTY12Q9BZ98 90 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 NSRP1Q9H0G5 558 aaKnown RBP1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 MS4A6AQ9H2W1 248 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 ZFYVE9O95405 1425 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 ANKRD50Q9ULJ7 1429 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 ADGRL2O95490 1459 aa1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 NKTRP30414 1462 aaKnown RBP1.88□□□□□ -2.11
SMCHD1-205ENST00000581383 ANKRD30AQ9BXX3 1397 aa1.87□□□□□ -2.11
SMCHD1-205ENST00000581383 ASXL1Q8IXJ9 1541 aa1.87□□□□□ -2.11
SMCHD1-205ENST00000581383 TRAV8-1A0A0A6YYK1 113 aa1.87□□□□□ -2.11
SMCHD1-205ENST00000581383 A0A1W2PQL4 384 aaPredicted RBP1.87□□□□□ -2.11
SMCHD1-205ENST00000581383 OVOL1O14753 267 aa1.87□□□□□ -2.11
SMCHD1-205ENST00000581383 GSTZ1O43708 216 aaPredicted RBP1.87□□□□□ -2.11
SMCHD1-205ENST00000581383 DSCAMO60469 2012 aa1.87□□□□□ -2.11
SMCHD1-205ENST00000581383 PSMG1O95456 288 aa1.87□□□□□ -2.11
SMCHD1-205ENST00000581383 MIPP30301 263 aa1.87□□□□□ -2.11
SMCHD1-205ENST00000581383 OR10J1P30954 320 aa1.87□□□□□ -2.11
SMCHD1-205ENST00000581383 ZNF140P52738 457 aaPredicted RBP1.87□□□□□ -2.11
SMCHD1-205ENST00000581383 TAS2R45P59539 299 aa1.87□□□□□ -2.11
SMCHD1-205ENST00000581383 DEFB103AP81534 67 aa1.87□□□□□ -2.11
SMCHD1-205ENST00000581383 ARHGAP31Q2M1Z3 1444 aa1.87□□□□□ -2.11
SMCHD1-205ENST00000581383 FNDC9Q8TBE3 224 aa1.87□□□□□ -2.11
SMCHD1-205ENST00000581383 Q8WTZ3 238 aa1.87□□□□□ -2.11
SMCHD1-205ENST00000581383 IMP3Q9NV31 184 aaKnown RBP1.87□□□□□ -2.11
SMCHD1-205ENST00000581383 CRCT1Q9UGL9 99 aa1.87□□□□□ -2.11
SMCHD1-205ENST00000581383 TET3O43151 1660 aa1.86□□□□□ -2.11
SMCHD1-205ENST00000581383 KDM5AP29375 1690 aaKnown RBP1.86□□□□□ -2.11
SMCHD1-205ENST00000581383 GCC2Q8IWJ2 1684 aa1.86□□□□□ -2.11
SMCHD1-205ENST00000581383 UNC13BO14795 1591 aa1.86□□□□□ -2.11
SMCHD1-205ENST00000581383 DIP2AQ14689 1571 aa1.86□□□□□ -2.11
SMCHD1-205ENST00000581383 FAM135BQ49AJ0 1406 aa1.86□□□□□ -2.11
SMCHD1-205ENST00000581383 TINCRA0A1B0GVN0 87 aa1.86□□□□□ -2.11
SMCHD1-205ENST00000581383 LY6LH3BQJ8 138 aa1.86□□□□□ -2.11
SMCHD1-205ENST00000581383 SLC17A3O00476 420 aa1.86□□□□□ -2.11
SMCHD1-205ENST00000581383 COCHO43405 550 aa1.86□□□□□ -2.11
SMCHD1-205ENST00000581383 YEATS4O95619 227 aa1.86□□□□□ -2.11
SMCHD1-205ENST00000581383 IFI30P13284 250 aa1.86□□□□□ -2.11
SMCHD1-205ENST00000581383 UGT2B7P16662 529 aa1.86□□□□□ -2.11
SMCHD1-205ENST00000581383 CA7P43166 264 aa1.86□□□□□ -2.11
SMCHD1-205ENST00000581383 KRTAP12-1P59990 96 aa1.86□□□□□ -2.11
SMCHD1-205ENST00000581383 C2orf91Q6ZV80 131 aa1.86□□□□□ -2.11
SMCHD1-205ENST00000581383 BAP18Q8IXM2 172 aa1.86□□□□□ -2.11
SMCHD1-205ENST00000581383 RNASE11Q8TAA1 199 aaKnown RBP1.86□□□□□ -2.11
SMCHD1-205ENST00000581383 KLF6Q99612 283 aaPredicted RBP1.86□□□□□ -2.11
SMCHD1-205ENST00000581383 KRTAP4-1Q9BYQ7 146 aa1.86□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms