RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 CCDC88CQ9P219 2028 aa1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 DOCK10Q96BY6 2186 aa1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 COL4A1P02462 1669 aa1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 A0A0A6YYH2 397 aa1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 IGKV2-29A2NJV5 120 aaPredicted RBP1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 OR6C6A6NF89 314 aa1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 A6NJ64 397 aa1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 C11orf86A6NJI1 115 aa1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 C21orf140B9A014 251 aa1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 ARL14EPLP0DKL9 152 aa1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 ZNF728P0DKX0 622 aa1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 CCL1P22362 96 aa1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 ATP6V0CP27449 155 aa1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 CD200P41217 278 aa1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 REG1BP48304 166 aa1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 CDC34P49427 236 aaPredicted RBP1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 CDK9P50750 372 aaKnown RBP1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 BLVRAP53004 296 aa1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 TMEM33P57088 247 aa1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 TAS2R45P59539 299 aa1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 BAP18Q8IXM2 172 aa1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 DAND5Q8N907 189 aa1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 OR2D3Q8NGH3 330 aa1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 RPS4Y2Q8TD47 263 aa1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 Q9BRP9 147 aa1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 TMEM109Q9BVC6 243 aa1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 SPANXB1Q9NS25 103 aaPredicted RBP1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 COQ4Q9Y3A0 265 aa1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 FAM215AQ9Y5M1 114 aa1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 RALGAPA2Q2PPJ7 1873 aa1.37□□□□□ -2.19
SMCHD1-204ENST00000581226 MAST2Q6P0Q8 1798 aa1.36□□□□□ -2.19
SMCHD1-204ENST00000581226 CUL9Q8IWT3 2517 aa1.36□□□□□ -2.19
SMCHD1-204ENST00000581226 MAP3K5Q99683 1374 aa1.36□□□□□ -2.19
SMCHD1-204ENST00000581226 EVPLLA8MZ36 301 aa1.36□□□□□ -2.19
SMCHD1-204ENST00000581226 H0Y980 276 aa1.36□□□□□ -2.19
SMCHD1-204ENST00000581226 H3BPC8 53 aa1.36□□□□□ -2.19
SMCHD1-204ENST00000581226 GNRH2O43555 120 aa1.36□□□□□ -2.19
SMCHD1-204ENST00000581226 PSMG1O95456 288 aa1.36□□□□□ -2.19
SMCHD1-204ENST00000581226 MT-CO2P00403 227 aa1.36□□□□□ -2.19
SMCHD1-204ENST00000581226 IGHV1-69P01742 117 aa1.36□□□□□ -2.19
SMCHD1-204ENST00000581226 EBPQ15125 230 aaKnown RBP1.36□□□□□ -2.19
SMCHD1-204ENST00000581226 C1orf194Q5T5A4 169 aa1.36□□□□□ -2.19
SMCHD1-204ENST00000581226 N4BP2L1Q5TBK1 243 aaPredicted RBP1.36□□□□□ -2.19
SMCHD1-204ENST00000581226 CST9Q5W186 159 aa1.36□□□□□ -2.19
SMCHD1-204ENST00000581226 AMTNQ6UX39 209 aa1.36□□□□□ -2.19
SMCHD1-204ENST00000581226 SPACA4Q8TDM5 124 aa1.36□□□□□ -2.19
SMCHD1-204ENST00000581226 SFRP2Q96HF1 295 aa1.36□□□□□ -2.19
SMCHD1-204ENST00000581226 MND1Q9BWT6 205 aa1.36□□□□□ -2.19
SMCHD1-204ENST00000581226 PRO2289Q9P1D8 64 aa1.36□□□□□ -2.19
SMCHD1-204ENST00000581226 ABCC11Q96J66 1382 aa1.35□□□□□ -2.19
SMCHD1-204ENST00000581226 A0A087WUU8 490 aa1.35□□□□□ -2.19
SMCHD1-204ENST00000581226 C5orf49A4QMS7 147 aa1.35□□□□□ -2.19
SMCHD1-204ENST00000581226 ALOX5APP20292 161 aa1.35□□□□□ -2.19
SMCHD1-204ENST00000581226 RPL12P30050 165 aaKnown RBP1.35□□□□□ -2.19
SMCHD1-204ENST00000581226 XCL1P47992 114 aa1.35□□□□□ -2.19
SMCHD1-204ENST00000581226 RBM11P57052 281 aaKnown RBP1.35□□□□□ -2.19
SMCHD1-204ENST00000581226 SBSNQ6UWP8 590 aa1.35□□□□□ -2.19
SMCHD1-204ENST00000581226 GPR32P1Q8NGA4 272 aa1.35□□□□□ -2.19
SMCHD1-204ENST00000581226 SMCR5Q8TEV8 140 aa1.35□□□□□ -2.19
SMCHD1-204ENST00000581226 MS4A6EQ96DS6 147 aa1.35□□□□□ -2.19
SMCHD1-204ENST00000581226 SLC35G5Q96KT7 338 aa1.35□□□□□ -2.19
SMCHD1-204ENST00000581226 TTTY13Q9BZ97 58 aa1.35□□□□□ -2.19
SMCHD1-204ENST00000581226 HES4Q9HCC6 221 aa1.35□□□□□ -2.19
SMCHD1-204ENST00000581226 NDUFB11Q9NX14 153 aa1.35□□□□□ -2.19
SMCHD1-204ENST00000581226 DKKL1Q9UK85 242 aa1.35□□□□□ -2.19
SMCHD1-204ENST00000581226 POLR3HQ9Y535 204 aaPredicted RBP1.35□□□□□ -2.19
SMCHD1-204ENST00000581226 RTEL1-TNFRSF6BF6WH68 1400 aa1.34□□□□□ -2.19
SMCHD1-204ENST00000581226 PRRC2BQ5JSZ5 2229 aaKnown RBP1.34□□□□□ -2.19
SMCHD1-204ENST00000581226 IGLV3-9A0A075B6K5 115 aa1.34□□□□□ -2.19
SMCHD1-204ENST00000581226 C9JCJ5 164 aa1.34□□□□□ -2.19
SMCHD1-204ENST00000581226 M0QZ92 97 aa1.34□□□□□ -2.19
SMCHD1-204ENST00000581226 NDUFB2O95178 105 aa1.34□□□□□ -2.19
SMCHD1-204ENST00000581226 DEXIO95424 95 aa1.34□□□□□ -2.19
SMCHD1-204ENST00000581226 APOMO95445 188 aa1.34□□□□□ -2.19
SMCHD1-204ENST00000581226 HLA-DQB2P05538 268 aa1.34□□□□□ -2.19
SMCHD1-204ENST00000581226 IL3P08700 152 aa1.34□□□□□ -2.19
SMCHD1-204ENST00000581226 HINT1P49773 126 aaPredicted RBP1.34□□□□□ -2.19
SMCHD1-204ENST00000581226 TNFAIP6P98066 277 aaPredicted RBP1.34□□□□□ -2.19
SMCHD1-204ENST00000581226 PLPPR5Q32ZL2 321 aa1.34□□□□□ -2.19
SMCHD1-204ENST00000581226 SFXN4Q6P4A7 337 aa1.34□□□□□ -2.19
SMCHD1-204ENST00000581226 COMMD7Q86VX2 200 aa1.34□□□□□ -2.19
SMCHD1-204ENST00000581226 UMODL1-AS1Q8N2C9 162 aa1.34□□□□□ -2.19
SMCHD1-204ENST00000581226 DEFB119Q8N690 84 aa1.34□□□□□ -2.19
SMCHD1-204ENST00000581226 OR4X2Q8NGF9 303 aa1.34□□□□□ -2.19
SMCHD1-204ENST00000581226 SGMS2Q8NHU3 365 aa1.34□□□□□ -2.19
SMCHD1-204ENST00000581226 FGF13Q92913 245 aa1.34□□□□□ -2.19
SMCHD1-204ENST00000581226 MRPS24Q96EL2 167 aaKnown RBP1.34□□□□□ -2.19
SMCHD1-204ENST00000581226 ANKRD36BP1Q96IX9 119 aa1.34□□□□□ -2.19
SMCHD1-204ENST00000581226 HRASLSQ9HDD0 168 aa1.34□□□□□ -2.19
SMCHD1-204ENST00000581226 XPNPEP1Q9NQW7 623 aa1.34□□□□□ -2.19
SMCHD1-204ENST00000581226 ANAPC10Q9UM13 185 aa1.34□□□□□ -2.19
SMCHD1-204ENST00000581226 MYH11P35749 1972 aa1.34□□□□□ -2.2
SMCHD1-204ENST00000581226 A0A1W2PQD3 144 aa1.33□□□□□ -2.2
SMCHD1-204ENST00000581226 ARRDC5A6NEK1 342 aa1.33□□□□□ -2.2
SMCHD1-204ENST00000581226 UBFD1O14562 309 aaKnown RBP1.33□□□□□ -2.2
SMCHD1-204ENST00000581226 PFDN6O15212 129 aa1.33□□□□□ -2.2
SMCHD1-204ENST00000581226 GPX1P07203 203 aa1.33□□□□□ -2.2
SMCHD1-204ENST00000581226 RPS12P25398 132 aaKnown RBP1.33□□□□□ -2.2
SMCHD1-204ENST00000581226 TNFAIP8L2Q6P589 184 aaPredicted RBP1.33□□□□□ -2.2
SMCHD1-204ENST00000581226 LRRN1Q6UXK5 716 aa1.33□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms