RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 C9orf135Q5VTT2 229 aa8.12□□□□□ -1.11
CCDC40-212ENST00000574799 LCN12Q6JVE5 192 aa8.12□□□□□ -1.11
CCDC40-212ENST00000574799 MRPL21Q7Z2W9 205 aaKnown RBP8.12□□□□□ -1.11
CCDC40-212ENST00000574799 PLEKHA3Q9HB20 300 aa8.12□□□□□ -1.11
CCDC40-212ENST00000574799 LIN7CQ9NUP9 197 aaKnown RBP8.12□□□□□ -1.11
CCDC40-212ENST00000574799 IGKV1-27A0A075B6S5 117 aa8.12□□□□□ -1.11
CCDC40-212ENST00000574799 A0A1W2PRS3 328 aa8.12□□□□□ -1.11
CCDC40-212ENST00000574799 F2Z2F3 143 aa8.12□□□□□ -1.11
CCDC40-212ENST00000574799 RNASEKQ6P5S7 137 aaKnown RBP8.12□□□□□ -1.11
CCDC40-212ENST00000574799 C10orf35Q96D05 121 aa8.12□□□□□ -1.11
CCDC40-212ENST00000574799 QTRT1Q9BXR0 403 aaKnown RBP8.12□□□□□ -1.11
CCDC40-212ENST00000574799 DEFB126Q9BYW3 111 aa8.12□□□□□ -1.11
CCDC40-212ENST00000574799 OR2W1Q9Y3N9 320 aa8.12□□□□□ -1.11
CCDC40-212ENST00000574799 ATRXP46100 2492 aa8.12□□□□□ -1.11
CCDC40-212ENST00000574799 ZNF407Q9C0G0 2248 aa8.12□□□□□ -1.11
CCDC40-212ENST00000574799 RALGAPA1Q6GYQ0 2036 aa8.12□□□□□ -1.11
CCDC40-212ENST00000574799 CELA2AP08217 269 aa8.12□□□□□ -1.11
CCDC40-212ENST00000574799 IGLC2P0DOY2 106 aa8.12□□□□□ -1.11
CCDC40-212ENST00000574799 IGLC3P0DOY3 106 aa8.12□□□□□ -1.11
CCDC40-212ENST00000574799 RAC2P15153 192 aa8.12□□□□□ -1.11
CCDC40-212ENST00000574799 BCL3P20749 454 aa8.12□□□□□ -1.11
CCDC40-212ENST00000574799 DUSP3P51452 185 aaPredicted RBP8.12□□□□□ -1.11
CCDC40-212ENST00000574799 TFF3Q07654 80 aa8.12□□□□□ -1.11
CCDC40-212ENST00000574799 LYSMD4Q5XG99 296 aa8.12□□□□□ -1.11
CCDC40-212ENST00000574799 Q6ZRM9 215 aa8.12□□□□□ -1.11
CCDC40-212ENST00000574799 OR10G3Q8NGC4 313 aa8.12□□□□□ -1.11
CCDC40-212ENST00000574799 OR1F12Q8NHA8 337 aa8.12□□□□□ -1.11
CCDC40-212ENST00000574799 HIPK2Q9H2X6 1198 aa8.12□□□□□ -1.11
CCDC40-212ENST00000574799 PNRC2Q9NPJ4 139 aaKnown RBP8.12□□□□□ -1.11
CCDC40-212ENST00000574799 NPIPB13A6NJU9 1138 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 NPIPB4C9JG80 1138 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 IGHV3-9P01782 118 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 CLEC2AQ6UVW9 174 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 GCNT2Q8N0V5 402 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 ZPBPQ9BS86 351 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 LRFN3Q9BTN0 628 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 GNB4Q9HAV0 340 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 PROK2Q9HC23 129 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 RNF115Q9Y4L5 304 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 M0R1X1 148 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 M0R2Z0 102 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 PSG1P11464 419 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 ZNF32P17041 273 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 TSPOP30536 169 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 SUMO3P55854 103 aaPredicted RBP8.11□□□□□ -1.11
CCDC40-212ENST00000574799 CLDN15P56746 228 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 RPL15P61313 204 aaKnown RBP8.11□□□□□ -1.11
CCDC40-212ENST00000574799 GNB1P62873 340 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 RELBQ01201 579 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 MMD2Q8IY49 270 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 UBALD2Q8IYN6 164 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 OR2M3Q8NG83 312 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 MRGPRDQ8TDS7 321 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 HSPB7Q9UBY9 170 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 CACNA1GO43497 2377 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 IGHV3-64DA0A0J9YX35 117 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 KALRNO60229 2985 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 KLF7O75840 302 aaPredicted RBP8.11□□□□□ -1.11
CCDC40-212ENST00000574799 MT-CO2P00403 227 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 FOXL1Q12952 345 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 Q5PR19 223 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 NIT1Q86X76 327 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 NINJ1Q92982 152 aa8.11□□□□□ -1.11
CCDC40-212ENST00000574799 ZNF703Q9H7S9 590 aaPredicted RBP8.11□□□□□ -1.11
CCDC40-212ENST00000574799 OTX1P32242 354 aaPredicted RBP8.1□□□□□ -1.11
CCDC40-212ENST00000574799 TIGITQ495A1 244 aa8.1□□□□□ -1.11
CCDC40-212ENST00000574799 SAXO1Q8IYX7 474 aa8.1□□□□□ -1.11
CCDC40-212ENST00000574799 PLSCR2Q9NRY7 297 aa8.1□□□□□ -1.11
CCDC40-212ENST00000574799 A0A1W2PNU3 283 aaPredicted RBP8.1□□□□□ -1.11
CCDC40-212ENST00000574799 SCO2A0A1W2PP80 73 aa8.1□□□□□ -1.11
CCDC40-212ENST00000574799 NUDT3O95989 172 aa8.1□□□□□ -1.11
CCDC40-212ENST00000574799 GPX1P07203 203 aa8.1□□□□□ -1.11
CCDC40-212ENST00000574799 FABP6P51161 128 aa8.1□□□□□ -1.11
CCDC40-212ENST00000574799 H2BFWTQ7Z2G1 175 aa8.1□□□□□ -1.11
CCDC40-212ENST00000574799 ODF3L1Q8IXM7 274 aa8.1□□□□□ -1.11
CCDC40-212ENST00000574799 ZNF114Q8NC26 417 aa8.1□□□□□ -1.11
CCDC40-212ENST00000574799 UCN2Q96RP3 112 aa8.1□□□□□ -1.11
CCDC40-212ENST00000574799 HINT2Q9BX68 163 aa8.1□□□□□ -1.11
CCDC40-212ENST00000574799 CST9LQ9H4G1 147 aa8.1□□□□□ -1.11
CCDC40-212ENST00000574799 C19orf25Q9UFG5 118 aaPredicted RBP8.1□□□□□ -1.11
CCDC40-212ENST00000574799 IL19Q9UHD0 177 aa8.1□□□□□ -1.11
CCDC40-212ENST00000574799 AKAP13Q12802 2813 aa8.1□□□□□ -1.11
CCDC40-212ENST00000574799 S1PR2O95136 353 aa8.1□□□□□ -1.11
CCDC40-212ENST00000574799 C3orf79P0CE67 100 aa8.1□□□□□ -1.11
CCDC40-212ENST00000574799 G6PCP35575 357 aa8.1□□□□□ -1.11
CCDC40-212ENST00000574799 FXYD3Q14802 87 aa8.1□□□□□ -1.11
CCDC40-212ENST00000574799 KRTCAP3Q53RY4 240 aa8.1□□□□□ -1.11
CCDC40-212ENST00000574799 OCIAD2Q56VL3 154 aa8.1□□□□□ -1.11
CCDC40-212ENST00000574799 GCSAMLQ5JQS6 135 aa8.1□□□□□ -1.11
CCDC40-212ENST00000574799 WDR73Q6P4I2 378 aa8.1□□□□□ -1.11
CCDC40-212ENST00000574799 OCC1Q8TAD7 63 aa8.1□□□□□ -1.11
CCDC40-212ENST00000574799 C11orf1Q9H5F2 150 aa8.1□□□□□ -1.11
CCDC40-212ENST00000574799 HEYLQ9NQ87 328 aaPredicted RBP8.1□□□□□ -1.11
CCDC40-212ENST00000574799 PRRC2CQ9Y520 2896 aaKnown RBP8.1□□□□□ -1.11
CCDC40-212ENST00000574799 SCRG1O75711 98 aa8.09□□□□□ -1.11
CCDC40-212ENST00000574799 NDUFB8O95169 186 aa8.09□□□□□ -1.11
CCDC40-212ENST00000574799 S100A7AQ86SG5 101 aa8.09□□□□□ -1.11
CCDC40-212ENST00000574799 DEFB123Q8N688 67 aa8.09□□□□□ -1.11
CCDC40-212ENST00000574799 TMEM105Q8N8V8 129 aa8.09□□□□□ -1.11
CCDC40-212ENST00000574799 MEGF9Q9H1U4 602 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms