RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 MXD1Q05195 221 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 EBPQ15125 230 aaKnown RBP2.8□□□□□ -1.96
NUP88-208ENST00000574087 NEDD8Q15843 81 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 SCGB2B2Q4G0G5 96 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 CCSMST1Q4G0I0 132 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 MORN2Q502X0 79 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 ATP6AP1LQ52LC2 224 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 AVPI1Q5T686 147 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 FAM27D1Q5T7N8 215 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 ZNF773Q6PK81 442 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 EPGNQ6UW88 154 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 H2AFVQ71UI9 128 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 TCTE3Q8IZS6 198 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 PRELID2Q8N945 189 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 OR8G5Q8NG78 346 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 OR52L1Q8NGH7 329 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 OR2K2Q8NGT1 345 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 LCN9Q8WX39 176 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 SLC7A6Q92536 515 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 ARL11Q969Q4 196 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 PPCDCQ96CD2 204 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 DIRAS2Q96HU8 199 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 SLC35G5Q96KT7 338 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 HYLS1Q96M11 299 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 CCDC115Q96NT0 180 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 FOXC2Q99958 501 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 PLA2G2FQ9BZM2 168 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 SH3BGRL3Q9H299 93 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 GPR84Q9NQS5 396 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 MED11Q9P086 117 aa2.8□□□□□ -1.96
NUP88-208ENST00000574087 ZNF230Q9UIE0 474 aaPredicted RBP2.8□□□□□ -1.96
NUP88-208ENST00000574087 TSPOAP1O95153 1857 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 PHIPQ8WWQ0 1821 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 MADDQ8WXG6 1647 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 TRAV36DV7A0A075B6V5 113 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 DAPL1A0PJW8 107 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 TMEM218A2RU14 115 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 ZNF726A6NNF4 738 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 C11orf94C9JXX5 98 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 M0R1B8 84 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 RBFOX2O43251 390 aaKnown RBP eCLIP2.79□□□□□ -1.96
NUP88-208ENST00000574087 OR7C2O60412 319 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 PIAS1O75925 651 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 KCNK2O95069 426 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 SOX14O95416 240 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 HPRT1P00492 218 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 NRASP01111 189 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 HBZP02008 142 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 OPN1SWP03999 348 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 SMIM17P0DL12 118 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 NPY1RP25929 384 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 BRS3P32247 399 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 SSR4P51571 173 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 TAS2R30P59541 319 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 TNFAIP6P98066 277 aaPredicted RBP2.79□□□□□ -1.96
NUP88-208ENST00000574087 OR5I1Q13606 314 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 CLEC12BQ2HXU8 276 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 RSPO1Q2MKA7 263 aaPredicted RBP2.79□□□□□ -1.96
NUP88-208ENST00000574087 Q5BKY6 102 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 VAX1Q5SQQ9 334 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 COL5A1-AS1Q5SY13 56 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 PRSS54Q6PEW0 395 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 ALKAL1Q6UXT8 129 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 C12orf54Q6X4T0 127 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 FBXW12Q6X9E4 464 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 Q6ZSR6 202 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 RASSF6Q6ZTQ3 369 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 OAFQ86UD1 273 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 PIANPQ8IYJ0 282 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 OR4K17Q8NGC6 315 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 OR4M1Q8NGD0 313 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 SLC37A2Q8TED4 501 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 ZMYND19Q96E35 227 aaPredicted RBP2.79□□□□□ -1.96
NUP88-208ENST00000574087 LINC00477Q96M19 166 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 SORT1Q99523 831 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 GPER1Q99527 375 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 KCTD14Q9BQ13 255 aaPredicted RBP2.79□□□□□ -1.96
NUP88-208ENST00000574087 ZNF649Q9BS31 505 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 NDFIP1Q9BT67 221 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 DMAC2Q9NW81 257 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 RBFOX1Q9NWB1 397 aaKnown RBP2.79□□□□□ -1.96
NUP88-208ENST00000574087 MRPL16Q9NX20 251 aaKnown RBP2.79□□□□□ -1.96
NUP88-208ENST00000574087 ZNF226Q9NYT6 803 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 TAS2R5Q9NYW4 299 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 NAT8BQ9UHF3 227 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 PRNDQ9UKY0 176 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 TRAPPC2LQ9UL33 140 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 MCTS1Q9ULC4 181 aaKnown RBP2.79□□□□□ -1.96
NUP88-208ENST00000574087 TNFSF18Q9UNG2 199 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 ST3GAL6Q9Y274 331 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 HS3ST2Q9Y278 367 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 V9GYS6 101 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 MYH4Q9Y623 1939 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 OBSCNQ5VST9 7968 aa2.79□□□□□ -1.96
NUP88-208ENST00000574087 ADAMTS12P58397 1594 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 DISP2A7MBM2 1401 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 C10orf71Q711Q0 1435 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 KIF13AQ9H1H9 1805 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 TRAV38-1A0A0B4J264 116 aa2.78□□□□□ -1.96
NUP88-208ENST00000574087 A0A0D9SFI3 127 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms