RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 QTRT1Q9BXR0 403 aaKnown RBP13.08□□□□□ -0.32
CIITA-204ENST00000570546 A0A0A6YYD4 124 aa13.08□□□□□ -0.32
CIITA-204ENST00000570546 RCC1LQ96I51 464 aaKnown RBP13.08□□□□□ -0.32
CIITA-204ENST00000570546 GGACTQ9BVM4 153 aa13.08□□□□□ -0.32
CIITA-204ENST00000570546 MRPL18Q9H0U6 180 aaKnown RBP13.08□□□□□ -0.32
CIITA-204ENST00000570546 IL17BQ9UHF5 180 aa13.08□□□□□ -0.32
CIITA-204ENST00000570546 SCN5AQ14524 2016 aa13.08□□□□□ -0.32
CIITA-204ENST00000570546 SNRPCP09234 159 aaKnown RBP13.07□□□□□ -0.32
CIITA-204ENST00000570546 LGALS7P47929 136 aa13.07□□□□□ -0.32
CIITA-204ENST00000570546 HSPE1P61604 102 aaKnown RBP13.07□□□□□ -0.32
CIITA-204ENST00000570546 SLC35E4Q6ICL7 350 aa13.07□□□□□ -0.32
CIITA-204ENST00000570546 GTF2H5Q6ZYL4 71 aa13.07□□□□□ -0.32
CIITA-204ENST00000570546 GBGT1Q8N5D6 347 aa13.07□□□□□ -0.32
CIITA-204ENST00000570546 FOXJ2Q9P0K8 574 aa13.07□□□□□ -0.32
CIITA-204ENST00000570546 HSPB8Q9UJY1 196 aa13.07□□□□□ -0.32
CIITA-204ENST00000570546 DMRT1Q9Y5R6 373 aa13.07□□□□□ -0.32
CIITA-204ENST00000570546 SEC16AO15027 2179 aa13.07□□□□□ -0.32
CIITA-204ENST00000570546 M0QZ24 198 aa13.07□□□□□ -0.32
CIITA-204ENST00000570546 PRNTQ86SH4 94 aa13.07□□□□□ -0.32
CIITA-204ENST00000570546 SHISA5Q8N114 240 aa13.07□□□□□ -0.32
CIITA-204ENST00000570546 CLEC5AQ9NY25 188 aa13.07□□□□□ -0.32
CIITA-204ENST00000570546 WDR81Q562E7 1941 aa13.07□□□□□ -0.32
CIITA-204ENST00000570546 CASP8AP2Q9UKL3 1982 aa13.07□□□□□ -0.32
CIITA-204ENST00000570546 J3QW42 95 aa13.07□□□□□ -0.32
CIITA-204ENST00000570546 SRP19P09132 144 aaKnown RBP13.07□□□□□ -0.32
CIITA-204ENST00000570546 SSTR5P35346 364 aa13.07□□□□□ -0.32
CIITA-204ENST00000570546 PQLC2Q6ZP29 291 aa13.07□□□□□ -0.32
CIITA-204ENST00000570546 VKORC1L1Q8N0U8 176 aa13.07□□□□□ -0.32
CIITA-204ENST00000570546 LEAP2Q969E1 77 aa13.07□□□□□ -0.32
CIITA-204ENST00000570546 SIGLEC12Q96PQ1 595 aa13.07□□□□□ -0.32
CIITA-204ENST00000570546 TIMP4Q99727 224 aa13.07□□□□□ -0.32
CIITA-204ENST00000570546 H0YIZ8 118 aa13.07□□□□□ -0.32
CIITA-204ENST00000570546 CDX4O14627 284 aaPredicted RBP13.07□□□□□ -0.32
CIITA-204ENST00000570546 RHBDL1O75783 438 aa13.07□□□□□ -0.32
CIITA-204ENST00000570546 RPL8P62917 257 aaKnown RBP13.07□□□□□ -0.32
CIITA-204ENST00000570546 ATP1A1-AS1Q5TC04 95 aa13.07□□□□□ -0.32
CIITA-204ENST00000570546 GRAMD2BQ96HH9 432 aa13.07□□□□□ -0.32
CIITA-204ENST00000570546 GDF15Q99988 308 aa13.07□□□□□ -0.32
CIITA-204ENST00000570546 IMMP1LQ96LU5 166 aa13.06□□□□□ -0.32
CIITA-204ENST00000570546 DDTP30046 118 aa13.06□□□□□ -0.32
CIITA-204ENST00000570546 MMDQ15546 238 aa13.06□□□□□ -0.32
CIITA-204ENST00000570546 NRN1LQ496H8 165 aa13.06□□□□□ -0.32
CIITA-204ENST00000570546 MRPL14Q6P1L8 145 aaKnown RBP13.06□□□□□ -0.32
CIITA-204ENST00000570546 ABHD12Q8N2K0 398 aa13.06□□□□□ -0.32
CIITA-204ENST00000570546 OR10S1Q8NGN2 331 aa13.06□□□□□ -0.32
CIITA-204ENST00000570546 TCF19Q9Y242 345 aa13.06□□□□□ -0.32
CIITA-204ENST00000570546 TRBV23-1A0A0A0MS06 115 aa13.06□□□□□ -0.32
CIITA-204ENST00000570546 LRRC75BQ2VPJ9 315 aa13.06□□□□□ -0.32
CIITA-204ENST00000570546 LOXL4Q96JB6 756 aa13.06□□□□□ -0.32
CIITA-204ENST00000570546 ZNF319Q9P2F9 582 aa13.06□□□□□ -0.32
CIITA-204ENST00000570546 UFC1Q9Y3C8 167 aa13.06□□□□□ -0.32
CIITA-204ENST00000570546 ORM1P02763 201 aa13.06□□□□□ -0.32
CIITA-204ENST00000570546 FAM89BQ8N5H3 189 aa13.06□□□□□ -0.32
CIITA-204ENST00000570546 IGLV3-32A0A0A0MS00 114 aa13.05□□□□□ -0.32
CIITA-204ENST00000570546 FGF16O43320 207 aa13.05□□□□□ -0.32
CIITA-204ENST00000570546 GOSR1O95249 250 aa13.05□□□□□ -0.32
CIITA-204ENST00000570546 CD99P14209 185 aa13.05□□□□□ -0.32
CIITA-204ENST00000570546 BMI1P35226 326 aa13.05□□□□□ -0.32
CIITA-204ENST00000570546 RPL27AP46776 148 aaKnown RBP13.05□□□□□ -0.32
CIITA-204ENST00000570546 DOLPP1Q86YN1 238 aa13.05□□□□□ -0.32
CIITA-204ENST00000570546 WNT9BO14905 357 aa13.05□□□□□ -0.32
CIITA-204ENST00000570546 PRSS1P07477 247 aa13.05□□□□□ -0.32
CIITA-204ENST00000570546 ZDHHC8Q9ULC8 765 aa13.05□□□□□ -0.32
CIITA-204ENST00000570546 VWA8A3KMH1 1905 aa13.05□□□□□ -0.32
CIITA-204ENST00000570546 RTP5Q14D33 572 aa13.05□□□□□ -0.32
CIITA-204ENST00000570546 ELOVL1Q9BW60 279 aa13.05□□□□□ -0.32
CIITA-204ENST00000570546 REPIN1Q9BWE0 567 aaKnown RBP13.05□□□□□ -0.32
CIITA-204ENST00000570546 PPOXP50336 477 aa13.05□□□□□ -0.32
CIITA-204ENST00000570546 TMEM56-RWDD3S4R434 201 aa13.05□□□□□ -0.32
CIITA-204ENST00000570546 MC5RP33032 325 aa13.04□□□□□ -0.32
CIITA-204ENST00000570546 SELENOTP62341 195 aa13.04□□□□□ -0.32
CIITA-204ENST00000570546 ZNF788Q6ZQV5 615 aa13.04□□□□□ -0.32
CIITA-204ENST00000570546 ZDHHC16Q969W1 377 aa13.04□□□□□ -0.32
CIITA-204ENST00000570546 SPSB4Q96A44 273 aa13.04□□□□□ -0.32
CIITA-204ENST00000570546 ZNF430Q9H8G1 570 aaPredicted RBP13.04□□□□□ -0.32
CIITA-204ENST00000570546 MYLKQ15746 1914 aa13.04□□□□□ -0.32
CIITA-204ENST00000570546 IGHV3-72A0A0B4J1Y9 119 aa13.04□□□□□ -0.32
CIITA-204ENST00000570546 PROB1E7EW31 1015 aa13.04□□□□□ -0.32
CIITA-204ENST00000570546 TMEM250H0YL14 139 aa13.04□□□□□ -0.32
CIITA-204ENST00000570546 AMY1AP04745 511 aa13.04□□□□□ -0.32
CIITA-204ENST00000570546 UMODP07911 640 aa13.04□□□□□ -0.32
CIITA-204ENST00000570546 SFRP2Q96HF1 295 aa13.04□□□□□ -0.32
CIITA-204ENST00000570546 PLAUP00749 431 aa13.04□□□□□ -0.32
CIITA-204ENST00000570546 SNRNP40Q96DI7 357 aaKnown RBP13.04□□□□□ -0.32
CIITA-204ENST00000570546 NPCDR1Q9BY65 106 aa13.04□□□□□ -0.32
CIITA-204ENST00000570546 CLDND2Q8NHS1 167 aa13.04□□□□□ -0.32
CIITA-204ENST00000570546 C1RLQ9NZP8 487 aa13.04□□□□□ -0.32
CIITA-204ENST00000570546 COLQQ9Y215 455 aaPredicted RBP13.04□□□□□ -0.32
CIITA-204ENST00000570546 OR2T8A6NH00 312 aa13.03□□□□□ -0.32
CIITA-204ENST00000570546 A8MWL6 223 aa13.03□□□□□ -0.32
CIITA-204ENST00000570546 C12orf77C9JDV5 145 aa13.03□□□□□ -0.32
CIITA-204ENST00000570546 HLA-DQA1P01909 254 aa13.03□□□□□ -0.32
CIITA-204ENST00000570546 CLPSP04118 112 aa13.03□□□□□ -0.32
CIITA-204ENST00000570546 FTH1P19P0C7X4 201 aa13.03□□□□□ -0.32
CIITA-204ENST00000570546 FXYD3Q14802 87 aa13.03□□□□□ -0.32
CIITA-204ENST00000570546 HCP5Q6MZN7 132 aa13.03□□□□□ -0.32
CIITA-204ENST00000570546 VWA1Q6PCB0 445 aa13.03□□□□□ -0.32
CIITA-204ENST00000570546 F5H697 171 aa13.03□□□□□ -0.32
CIITA-204ENST00000570546 GDF9O60383 454 aa13.03□□□□□ -0.32
CIITA-204ENST00000570546 TSC2P49815 1807 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms