RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 TMEM164Q5U3C3 297 aa12.2□□□□□ -0.46
VPS35-210ENST00000568784 NPCDR1Q9BY65 106 aa12.2□□□□□ -0.46
VPS35-210ENST00000568784 CACNA1HO95180 2353 aa12.2□□□□□ -0.46
VPS35-210ENST00000568784 C12orf77C9JDV5 145 aa12.2□□□□□ -0.46
VPS35-210ENST00000568784 PFN1P07737 140 aaKnown RBP12.2□□□□□ -0.46
VPS35-210ENST00000568784 TAS2R60P59551 318 aa12.2□□□□□ -0.46
VPS35-210ENST00000568784 PMS2CLQ68D20 193 aa12.2□□□□□ -0.46
VPS35-210ENST00000568784 TBX15Q96SF7 602 aa12.2□□□□□ -0.46
VPS35-210ENST00000568784 RIF1Q5UIP0 2472 aaKnown RBP12.2□□□□□ -0.46
VPS35-210ENST00000568784 ARFGEF3Q5TH69 2177 aa12.2□□□□□ -0.46
VPS35-210ENST00000568784 COL4A2P08572 1712 aa12.2□□□□□ -0.46
VPS35-210ENST00000568784 LRRC30A6NM36 301 aa12.2□□□□□ -0.46
VPS35-210ENST00000568784 M0R1X1 148 aa12.2□□□□□ -0.46
VPS35-210ENST00000568784 PSPNO60542 156 aa12.2□□□□□ -0.46
VPS35-210ENST00000568784 GPR12P47775 334 aa12.2□□□□□ -0.46
VPS35-210ENST00000568784 MIC13Q5XKP0 118 aa12.2□□□□□ -0.46
VPS35-210ENST00000568784 MOB1BQ7L9L4 216 aa12.2□□□□□ -0.46
VPS35-210ENST00000568784 PILRBQ9UKJ0 227 aa12.2□□□□□ -0.46
VPS35-210ENST00000568784 IGHEP01854 428 aa12.19□□□□□ -0.46
VPS35-210ENST00000568784 ZNF25P17030 456 aaPredicted RBP12.19□□□□□ -0.46
VPS35-210ENST00000568784 MEOX1P50221 254 aa12.19□□□□□ -0.46
VPS35-210ENST00000568784 TCL1AP56279 114 aa12.19□□□□□ -0.46
VPS35-210ENST00000568784 ERVK-16P61578 105 aa12.19□□□□□ -0.46
VPS35-210ENST00000568784 COLCA1Q6ZS62 124 aa12.19□□□□□ -0.46
VPS35-210ENST00000568784 PLCE1Q9P212 2302 aa12.19□□□□□ -0.46
VPS35-210ENST00000568784 IL3RAP26951 378 aa12.19□□□□□ -0.46
VPS35-210ENST00000568784 GFRA1P56159 465 aa12.19□□□□□ -0.46
VPS35-210ENST00000568784 HTD2P86397 168 aa12.19□□□□□ -0.46
VPS35-210ENST00000568784 SSPNQ14714 243 aa12.19□□□□□ -0.46
VPS35-210ENST00000568784 STRADBQ9C0K7 418 aa12.19□□□□□ -0.46
VPS35-210ENST00000568784 TUBG2Q9NRH3 451 aa12.19□□□□□ -0.46
VPS35-210ENST00000568784 TNCP24821 2201 aa12.19□□□□□ -0.46
VPS35-210ENST00000568784 SLC17A3O00476 420 aa12.19□□□□□ -0.46
VPS35-210ENST00000568784 CER1O95813 267 aa12.19□□□□□ -0.46
VPS35-210ENST00000568784 CBLN1P23435 193 aa12.19□□□□□ -0.46
VPS35-210ENST00000568784 LHX2P50458 406 aa12.19□□□□□ -0.46
VPS35-210ENST00000568784 MANBALQ9NQG1 85 aa12.19□□□□□ -0.46
VPS35-210ENST00000568784 NBASA2RRP1 2371 aa12.18□□□□□ -0.46
VPS35-210ENST00000568784 R3HDM4Q96D70 268 aa12.18□□□□□ -0.46
VPS35-210ENST00000568784 PARD6AQ9NPB6 346 aa12.18□□□□□ -0.46
VPS35-210ENST00000568784 PRDM6Q9NQX0 595 aa12.18□□□□□ -0.46
VPS35-210ENST00000568784 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.18□□□□□ -0.46
VPS35-210ENST00000568784 AQP7O14520 342 aa12.18□□□□□ -0.46
VPS35-210ENST00000568784 CLDN18P56856 261 aa12.18□□□□□ -0.46
VPS35-210ENST00000568784 KRTDAPP60985 99 aa12.18□□□□□ -0.46
VPS35-210ENST00000568784 ABHD12Q8N2K0 398 aa12.18□□□□□ -0.46
VPS35-210ENST00000568784 LEAP2Q969E1 77 aa12.18□□□□□ -0.46
VPS35-210ENST00000568784 ANAPC16Q96DE5 110 aa12.18□□□□□ -0.46
VPS35-210ENST00000568784 QTRT1Q9BXR0 403 aaKnown RBP12.18□□□□□ -0.46
VPS35-210ENST00000568784 ZNF703Q9H7S9 590 aaPredicted RBP12.18□□□□□ -0.46
VPS35-210ENST00000568784 ENY2Q9NPA8 101 aa12.18□□□□□ -0.46
VPS35-210ENST00000568784 TP53TG5Q9Y2B4 290 aa12.18□□□□□ -0.46
VPS35-210ENST00000568784 TMEM250H0YL14 139 aa12.18□□□□□ -0.46
VPS35-210ENST00000568784 CD1BP29016 333 aa12.18□□□□□ -0.46
VPS35-210ENST00000568784 ATP1A1-AS1Q5TC04 95 aa12.18□□□□□ -0.46
VPS35-210ENST00000568784 SH2D2AQ9NP31 389 aa12.18□□□□□ -0.46
VPS35-210ENST00000568784 TMEM242Q9NWH2 141 aa12.18□□□□□ -0.46
VPS35-210ENST00000568784 CMTM2Q8TAZ6 248 aa12.17□□□□□ -0.46
VPS35-210ENST00000568784 VN1R17PQ8TDU5 208 aa12.17□□□□□ -0.46
VPS35-210ENST00000568784 CIB3Q96Q77 187 aaPredicted RBP12.17□□□□□ -0.46
VPS35-210ENST00000568784 HIPK2Q9H2X6 1198 aa12.17□□□□□ -0.46
VPS35-210ENST00000568784 OR6C3Q9NZP0 311 aa12.17□□□□□ -0.46
VPS35-210ENST00000568784 ARL14EPLP0DKL9 152 aa12.17□□□□□ -0.46
VPS35-210ENST00000568784 KIAA1644Q3SXP7 199 aa12.17□□□□□ -0.46
VPS35-210ENST00000568784 Q6ZS49 121 aa12.17□□□□□ -0.46
VPS35-210ENST00000568784 NDUFAF3Q9BU61 184 aa12.17□□□□□ -0.46
VPS35-210ENST00000568784 MARCH11A6NNE9 402 aa12.17□□□□□ -0.46
VPS35-210ENST00000568784 SPINT2O43291 252 aa12.17□□□□□ -0.46
VPS35-210ENST00000568784 MGST1P10620 155 aaKnown RBP12.17□□□□□ -0.46
VPS35-210ENST00000568784 IER3P46695 156 aa12.17□□□□□ -0.46
VPS35-210ENST00000568784 ZNF645Q8N7E2 425 aa12.17□□□□□ -0.46
VPS35-210ENST00000568784 DEFB108BQ8NET1 73 aa12.17□□□□□ -0.46
VPS35-210ENST00000568784 GCH1P30793 250 aa12.16□□□□□ -0.46
VPS35-210ENST00000568784 TMEM170AQ8WVE7 144 aa12.16□□□□□ -0.46
VPS35-210ENST00000568784 TTC28Q96AY4 2481 aa12.16□□□□□ -0.46
VPS35-210ENST00000568784 A8MWP6 167 aa12.16□□□□□ -0.46
VPS35-210ENST00000568784 FCN1O00602 326 aa12.16□□□□□ -0.46
VPS35-210ENST00000568784 NEURL1O76050 574 aa12.16□□□□□ -0.46
VPS35-210ENST00000568784 GCGP01275 180 aa12.16□□□□□ -0.46
VPS35-210ENST00000568784 Q6P435 159 aa12.16□□□□□ -0.46
VPS35-210ENST00000568784 ZNF497Q6ZNH5 498 aa12.16□□□□□ -0.46
VPS35-210ENST00000568784 OR5R1Q8NH85 324 aa12.16□□□□□ -0.46
VPS35-210ENST00000568784 PLEKHA3Q9HB20 300 aa12.16□□□□□ -0.46
VPS35-210ENST00000568784 SELLP14151 372 aa12.16□□□□□ -0.46
VPS35-210ENST00000568784 COL8A2P25067 703 aa12.16□□□□□ -0.46
VPS35-210ENST00000568784 ERVFC1-1P60608 527 aa12.16□□□□□ -0.46
VPS35-210ENST00000568784 NOL4LQ96MY1 436 aaPredicted RBP12.16□□□□□ -0.46
VPS35-210ENST00000568784 TRAV34A0A0B4J273 112 aa12.15□□□□□ -0.46
VPS35-210ENST00000568784 SCO2A0A1W2PP80 73 aa12.15□□□□□ -0.46
VPS35-210ENST00000568784 M0R143 59 aa12.15□□□□□ -0.46
VPS35-210ENST00000568784 PMCHP20382 165 aa12.15□□□□□ -0.46
VPS35-210ENST00000568784 NTF3P20783 257 aa12.15□□□□□ -0.46
VPS35-210ENST00000568784 ATP6V1FQ16864 119 aa12.15□□□□□ -0.46
VPS35-210ENST00000568784 FBXW9Q5XUX1 488 aa12.15□□□□□ -0.46
VPS35-210ENST00000568784 TMEM14EPQ6UXP3 125 aa12.15□□□□□ -0.46
VPS35-210ENST00000568784 WDR86Q86TI4 376 aa12.15□□□□□ -0.46
VPS35-210ENST00000568784 ZNF114Q8NC26 417 aa12.15□□□□□ -0.46
VPS35-210ENST00000568784 OR10G8Q8NGN5 311 aa12.15□□□□□ -0.46
VPS35-210ENST00000568784 NAGKQ9UJ70 344 aa12.15□□□□□ -0.46
VPS35-210ENST00000568784 TRA2AQ13595 282 aaKnown RBP eCLIP12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms