RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 CBX3Q13185 183 aa13.26□□□□□ -0.29
CLK3-221ENST00000568139 DEFB114Q30KQ6 69 aa13.26□□□□□ -0.29
CLK3-221ENST00000568139 HSD17B12Q53GQ0 312 aa13.26□□□□□ -0.29
CLK3-221ENST00000568139 CEACAM19Q7Z692 300 aa13.26□□□□□ -0.29
CLK3-221ENST00000568139 FAM223AQ8IWN6 122 aa13.26□□□□□ -0.29
CLK3-221ENST00000568139 OR4A4PQ8NGN8 299 aa13.26□□□□□ -0.29
CLK3-221ENST00000568139 C5orf30Q96GV9 206 aa13.26□□□□□ -0.29
CLK3-221ENST00000568139 ARHGAP5-AS1Q96IT6 56 aa13.26□□□□□ -0.29
CLK3-221ENST00000568139 WFDC10AQ9H1F0 79 aa13.26□□□□□ -0.29
CLK3-221ENST00000568139 OR2D2Q9H210 308 aa13.26□□□□□ -0.29
CLK3-221ENST00000568139 ZC4H2Q9NQZ6 224 aa13.26□□□□□ -0.29
CLK3-221ENST00000568139 FKBP14Q9NWM8 211 aa13.26□□□□□ -0.29
CLK3-221ENST00000568139 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.25□□□□□ -0.29
CLK3-221ENST00000568139 SLC17A2O00624 439 aa13.25□□□□□ -0.29
CLK3-221ENST00000568139 UCHL1P09936 223 aa13.25□□□□□ -0.29
CLK3-221ENST00000568139 RRASP10301 218 aa13.25□□□□□ -0.29
CLK3-221ENST00000568139 KIR2DS2P43631 304 aa13.25□□□□□ -0.29
CLK3-221ENST00000568139 UBE2KP61086 200 aa13.25□□□□□ -0.29
CLK3-221ENST00000568139 ZNF45Q02386 682 aa13.25□□□□□ -0.29
CLK3-221ENST00000568139 ATP5G2Q06055 141 aa13.25□□□□□ -0.29
CLK3-221ENST00000568139 EXOSC2Q13868 293 aaKnown RBP13.25□□□□□ -0.29
CLK3-221ENST00000568139 PRSS8Q16651 343 aa13.25□□□□□ -0.29
CLK3-221ENST00000568139 FBLIM1Q8WUP2 373 aa13.25□□□□□ -0.29
CLK3-221ENST00000568139 SRSF12Q8WXF0 261 aaKnown RBP13.25□□□□□ -0.29
CLK3-221ENST00000568139 LINC00476Q8WZB0 136 aa13.25□□□□□ -0.29
CLK3-221ENST00000568139 GFI1Q99684 422 aa13.25□□□□□ -0.29
CLK3-221ENST00000568139 CD3GP09693 182 aa13.24□□□□□ -0.29
CLK3-221ENST00000568139 P2RY14Q15391 338 aa13.24□□□□□ -0.29
CLK3-221ENST00000568139 TNXAQ16473 311 aa13.24□□□□□ -0.29
CLK3-221ENST00000568139 RTL8BQ17RB0 113 aa13.24□□□□□ -0.29
CLK3-221ENST00000568139 VMA21Q3ZAQ7 101 aa13.24□□□□□ -0.29
CLK3-221ENST00000568139 PLAC9Q5JTB6 97 aa13.24□□□□□ -0.29
CLK3-221ENST00000568139 PACRGLQ8N7B6 248 aa13.24□□□□□ -0.29
CLK3-221ENST00000568139 BPIFB6Q8NFQ5 453 aa13.24□□□□□ -0.29
CLK3-221ENST00000568139 DYNLRB2Q8TF09 96 aa13.24□□□□□ -0.29
CLK3-221ENST00000568139 DDB2Q92466 427 aa13.24□□□□□ -0.29
CLK3-221ENST00000568139 KCTD12Q96CX2 325 aaKnown RBP13.24□□□□□ -0.29
CLK3-221ENST00000568139 CABLES2Q9BTV7 478 aa13.24□□□□□ -0.29
CLK3-221ENST00000568139 C8orf4Q9NR00 106 aa13.24□□□□□ -0.29
CLK3-221ENST00000568139 DMRT1Q9Y5R6 373 aa13.24□□□□□ -0.29
CLK3-221ENST00000568139 C2orf70A6NJV1 201 aa13.23□□□□□ -0.29
CLK3-221ENST00000568139 FABP7O15540 132 aa13.23□□□□□ -0.29
CLK3-221ENST00000568139 DIRAS3O95661 229 aa13.23□□□□□ -0.29
CLK3-221ENST00000568139 PRH1P02810 166 aa13.23□□□□□ -0.29
CLK3-221ENST00000568139 GNAO1P09471 354 aa13.23□□□□□ -0.29
CLK3-221ENST00000568139 IGSF11Q5DX21 431 aa13.23□□□□□ -0.29
CLK3-221ENST00000568139 C8orf59Q8N0T1 100 aaPredicted RBP13.23□□□□□ -0.29
CLK3-221ENST00000568139 MND1Q9BWT6 205 aa13.23□□□□□ -0.29
CLK3-221ENST00000568139 PLGRKTQ9HBL7 147 aa13.23□□□□□ -0.29
CLK3-221ENST00000568139 TECRQ9NZ01 308 aaKnown RBP13.23□□□□□ -0.29
CLK3-221ENST00000568139 TRBV6-7A0A0A0MS04 114 aa13.22□□□□□ -0.29
CLK3-221ENST00000568139 BET1O15155 118 aa13.22□□□□□ -0.29
CLK3-221ENST00000568139 MPPED1O15442 326 aa13.22□□□□□ -0.29
CLK3-221ENST00000568139 TUSC2O75896 110 aa13.22□□□□□ -0.29
CLK3-221ENST00000568139 FOLR2P14207 255 aa13.22□□□□□ -0.29
CLK3-221ENST00000568139 EDN2P20800 178 aa13.22□□□□□ -0.29
CLK3-221ENST00000568139 TPBGQ13641 420 aa13.22□□□□□ -0.29
CLK3-221ENST00000568139 GUCA2BQ16661 112 aa13.22□□□□□ -0.29
CLK3-221ENST00000568139 FAM209BQ5JX69 171 aa13.22□□□□□ -0.29
CLK3-221ENST00000568139 IDO2Q6ZQW0 420 aa13.22□□□□□ -0.29
CLK3-221ENST00000568139 TTC9CQ8N5M4 171 aa13.22□□□□□ -0.29
CLK3-221ENST00000568139 OR56B1Q8NGI3 324 aa13.22□□□□□ -0.29
CLK3-221ENST00000568139 OR10J5Q8NHC4 309 aa13.22□□□□□ -0.29
CLK3-221ENST00000568139 KCNK7Q9Y2U2 307 aa13.22□□□□□ -0.29
CLK3-221ENST00000568139 LSM2Q9Y333 95 aaKnown RBP13.22□□□□□ -0.29
CLK3-221ENST00000568139 LGALS9O00182 355 aa13.21□□□□□ -0.29
CLK3-221ENST00000568139 CDK1P06493 297 aa13.21□□□□□ -0.29
CLK3-221ENST00000568139 GSTT2P0CG29 244 aa13.21□□□□□ -0.29
CLK3-221ENST00000568139 GSTT2BP0CG30 244 aa13.21□□□□□ -0.29
CLK3-221ENST00000568139 DUTP33316 252 aaKnown RBP13.21□□□□□ -0.29
CLK3-221ENST00000568139 SPHARQ15513 63 aa13.21□□□□□ -0.29
CLK3-221ENST00000568139 NECAP1Q8NC96 275 aa13.21□□□□□ -0.29
CLK3-221ENST00000568139 OSR1Q8TAX0 266 aaPredicted RBP13.21□□□□□ -0.29
CLK3-221ENST00000568139 ACOT12Q8WYK0 555 aa13.21□□□□□ -0.29
CLK3-221ENST00000568139 WDR89Q96FK6 387 aaPredicted RBP13.21□□□□□ -0.29
CLK3-221ENST00000568139 ADTRPQ96IZ2 230 aa13.21□□□□□ -0.29
CLK3-221ENST00000568139 ZNF430Q9H8G1 570 aaPredicted RBP13.21□□□□□ -0.29
CLK3-221ENST00000568139 AK6Q9Y3D8 172 aaKnown RBP13.21□□□□□ -0.29
CLK3-221ENST00000568139 LINC00473A8K010 186 aa13.2□□□□□ -0.3
CLK3-221ENST00000568139 PPP5D1E7EU14 171 aa13.2□□□□□ -0.3
CLK3-221ENST00000568139 GGCTO75223 188 aaKnown RBP13.2□□□□□ -0.3
CLK3-221ENST00000568139 CRYZL1O95825 349 aa13.2□□□□□ -0.3
CLK3-221ENST00000568139 FCGR3AP08637 254 aa13.2□□□□□ -0.3
CLK3-221ENST00000568139 RAB11BQ15907 218 aa13.2□□□□□ -0.3
CLK3-221ENST00000568139 C15orf32Q32M92 178 aa13.2□□□□□ -0.3
CLK3-221ENST00000568139 C2orf76Q3KRA6 126 aa13.2□□□□□ -0.3
CLK3-221ENST00000568139 TMEM91Q6ZNR0 172 aa13.2□□□□□ -0.3
CLK3-221ENST00000568139 SPIN2AQ99865 258 aa13.2□□□□□ -0.3
CLK3-221ENST00000568139 SPIN2BQ9BPZ2 258 aa13.2□□□□□ -0.3
CLK3-221ENST00000568139 OVOL2Q9BRP0 275 aa13.2□□□□□ -0.3
CLK3-221ENST00000568139 LY6G6CO95867 125 aa13.19□□□□□ -0.3
CLK3-221ENST00000568139 CLDN12P56749 244 aa13.19□□□□□ -0.3
CLK3-221ENST00000568139 CDK10Q15131 360 aa13.19□□□□□ -0.3
CLK3-221ENST00000568139 SLC16A13Q7RTY0 426 aa13.19□□□□□ -0.3
CLK3-221ENST00000568139 GPHB5Q86YW7 130 aa13.19□□□□□ -0.3
CLK3-221ENST00000568139 FAM3DQ96BQ1 224 aa13.19□□□□□ -0.3
CLK3-221ENST00000568139 RBM7Q9Y580 266 aaKnown RBP13.19□□□□□ -0.3
CLK3-221ENST00000568139 DENRO43583 198 aaKnown RBP13.18□□□□□ -0.3
CLK3-221ENST00000568139 CREBL2O60519 120 aaPredicted RBP13.18□□□□□ -0.3
CLK3-221ENST00000568139 OR2J3O76001 311 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 122.3 ms