RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	DEFB121	Q5J5C9	76 aa		5.4	□□□□□ -1.54
SF3B3-209	ENST00000567635	ZNF562	Q6V9R5	426 aa		5.4	□□□□□ -1.54
SF3B3-209	ENST00000567635	ZNF491	Q8N8L2	437 aa		5.4	□□□□□ -1.54
SF3B3-209	ENST00000567635	ZNF383	Q8NA42	475 aa		5.4	□□□□□ -1.54
SF3B3-209	ENST00000567635	ZNF436-AS1	Q8NC38	126 aa	Predicted RBP	5.4	□□□□□ -1.54
SF3B3-209	ENST00000567635	C4orf3	Q8WVX3	66 aa		5.4	□□□□□ -1.54
SF3B3-209	ENST00000567635	UBE2E2	Q96LR5	201 aa		5.4	□□□□□ -1.54
SF3B3-209	ENST00000567635	TSNAX	Q99598	290 aa	Known RBP	5.4	□□□□□ -1.54
SF3B3-209	ENST00000567635	NXF2	Q9GZY0	626 aa	Known RBP	5.4	□□□□□ -1.54
SF3B3-209	ENST00000567635	KLK15	Q9H2R5	256 aa		5.4	□□□□□ -1.54
SF3B3-209	ENST00000567635	FBXL15	Q9H469	300 aa		5.4	□□□□□ -1.54
SF3B3-209	ENST00000567635	PARP11	Q9NR21	331 aa		5.4	□□□□□ -1.54
SF3B3-209	ENST00000567635	ZNF230	Q9UIE0	474 aa	Predicted RBP	5.4	□□□□□ -1.54
SF3B3-209	ENST00000567635	GAB2	Q9UQC2	676 aa		5.4	□□□□□ -1.54
SF3B3-209	ENST00000567635	RBMX2	Q9Y388	322 aa	Known RBP	5.4	□□□□□ -1.54
SF3B3-209	ENST00000567635	NUBP2	Q9Y5Y2	271 aa		5.4	□□□□□ -1.54
SF3B3-209	ENST00000567635	WI2-2373I1.2	A0A1W2PRP0	233 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	SMIM30	A4D0T7	59 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	FAM25A	B3EWG3	89 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	FAM25C	B3EWG5	89 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	FAM25G	B3EWG6	89 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635		K7EIL1	84 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635		M0R1X1	148 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	APOA2	P02652	100 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	IGKV1-16	P04430	117 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	EGR2	P11161	476 aa	Predicted RBP	5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	CTRB1	P17538	263 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	DTYMK	P23919	212 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	SDC2	P34741	201 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	RPS19	P39019	145 aa	Known RBP	5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	LGALS7	P47929	136 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	CRIP2	P52943	208 aa	Predicted RBP	5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	LINC00205	P59089	165 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	RUNX1	Q01196	453 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	TAGLN	Q01995	201 aa	Known RBP	5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	KIAA0141	Q14154	515 aa	Predicted RBP	5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	DEFB136	Q30KP8	78 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	AKIRIN2	Q53H80	203 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	C19orf54	Q5BKX5	351 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	CTRB2	Q6GPI1	263 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635		Q6ZS49	121 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	PPP1R27	Q86WC6	154 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	PDPN	Q86YL7	162 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	CCDC28A	Q8IWP9	274 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	CADM3	Q8N126	398 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	OR5M8	Q8NGP6	311 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	OR6Q1	Q8NGQ2	317 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	OR1N2	Q8NGR9	330 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	MYOZ3	Q8TDC0	251 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	ABHD5	Q8WTS1	349 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	CHAC2	Q8WUX2	184 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	MAFIP	Q8WZ33	124 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	FLYWCH2	Q96CP2	140 aa	Known RBP	5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	CLCC1	Q96S66	551 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	GINS4	Q9BRT9	223 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	CABLES2	Q9BTV7	478 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	ST6GALNAC5	Q9BVH7	336 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	SLIRP	Q9GZT3	109 aa	Known RBP	5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	RNF167	Q9H6Y7	350 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	EXOSC5	Q9NQT4	235 aa	Known RBP eCLIP	5.39	□□□□□ -1.55	1e-6	■■□□□ 12.2
SF3B3-209	ENST00000567635	CCDC59	Q9P031	241 aa	Known RBP	5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	METTL1	Q9UBP6	276 aa	Known RBP	5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	FOXA2	Q9Y261	457 aa	Predicted RBP	5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	VSIG4	Q9Y279	399 aa		5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635	RBM7	Q9Y580	266 aa	Known RBP	5.39	□□□□□ -1.55
SF3B3-209	ENST00000567635		I3L521	148 aa		5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	SCGN	O76038	276 aa		5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	SPDEF	O95238	335 aa		5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	CTXN2	P0C2S0	81 aa		5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	RRAS	P10301	218 aa		5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	RCVRN	P35243	200 aa		5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	TGFBR1	P36897	503 aa		5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	RORC	P51449	518 aa		5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	DGCR2	P98153	550 aa		5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	PITPNA	Q00169	270 aa		5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	ECSCR	Q19T08	205 aa		5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	C4orf46	Q504U0	113 aa		5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	ACTBL2	Q562R1	376 aa		5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	C9orf66	Q5T8R8	295 aa		5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	HACD4	Q5VWC8	232 aa		5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	UNQ5815/PRO19632	Q6UWF5	114 aa		5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	IDO2	Q6ZQW0	420 aa		5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	H1FOO	Q8IZA3	346 aa	Predicted RBP	5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	TCTEX1D1	Q8N7M0	179 aa		5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	OR11H1	Q8NG94	326 aa		5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	MCFD2	Q8NI22	146 aa		5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	OR2D2	Q9H210	308 aa		5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	SLA2	Q9H6Q3	261 aa		5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	SLC35D1	Q9NTN3	355 aa		5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	SDHAF2	Q9NX18	166 aa		5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	ELF5	Q9UKW6	265 aa	Predicted RBP	5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	FBXO7	Q9Y3I1	522 aa		5.38	□□□□□ -1.55
SF3B3-209	ENST00000567635	IGKV1D-8	A0A087WSZ0	117 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635		A0A1W2PN81	502 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	FAM25E	A8MYX2	175 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	SEC14L6	B5MCN3	397 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635		J3QRK9	145 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	SLC25A17	O43808	307 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	SOX15	O60248	233 aa		5.37	□□□□□ -1.55
SF3B3-209	ENST00000567635	RAMP3	O60896	148 aa		5.37	□□□□□ -1.55

Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms