RNA–Protein interactions for RNA: ENST00000564096.1

CLK3-214, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 805 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-214ENST00000564096 PDCD10Q9BUL8 212 aa10.37□□□□□ -0.75
CLK3-214ENST00000564096 YLPM1P49750 1951 aaKnown RBP10.36□□□□□ -0.75
CLK3-214ENST00000564096 IGHV3OR16-10A0A075B7F0 116 aa10.36□□□□□ -0.75
CLK3-214ENST00000564096 TIMM23O14925 209 aa10.36□□□□□ -0.75
CLK3-214ENST00000564096 RAMP3O60896 148 aa10.36□□□□□ -0.75
CLK3-214ENST00000564096 S1PR2O95136 353 aa10.36□□□□□ -0.75
CLK3-214ENST00000564096 HRASP01112 189 aa10.36□□□□□ -0.75
CLK3-214ENST00000564096 IGHV4-38-2P0DP08 117 aa10.36□□□□□ -0.75
CLK3-214ENST00000564096 NQO2P16083 231 aa10.36□□□□□ -0.75
CLK3-214ENST00000564096 VDAC1P21796 283 aa10.36□□□□□ -0.75
CLK3-214ENST00000564096 SCGB2A2Q13296 93 aa10.36□□□□□ -0.75
CLK3-214ENST00000564096 DIAPH2-AS1Q14236 149 aa10.36□□□□□ -0.75
CLK3-214ENST00000564096 RUSC1-AS1Q66K80 236 aa10.36□□□□□ -0.75
CLK3-214ENST00000564096 C1orf229Q6ZS94 237 aaPredicted RBP10.36□□□□□ -0.75
CLK3-214ENST00000564096 FAM219AQ8IW50 185 aa10.36□□□□□ -0.75
CLK3-214ENST00000564096 CADM3Q8N126 398 aa10.36□□□□□ -0.75
CLK3-214ENST00000564096 SLC35G3Q8N808 338 aa10.36□□□□□ -0.75
CLK3-214ENST00000564096 FLYWCH2Q96CP2 140 aaKnown RBP10.36□□□□□ -0.75
CLK3-214ENST00000564096 HARBI1Q96MB7 349 aa10.36□□□□□ -0.75
CLK3-214ENST00000564096 MS4A7Q9GZW8 240 aaPredicted RBP10.36□□□□□ -0.75
CLK3-214ENST00000564096 PRR13Q9NZ81 148 aa10.36□□□□□ -0.75
CLK3-214ENST00000564096 NUP50Q9UKX7 468 aa10.36□□□□□ -0.75
CLK3-214ENST00000564096 CCDC168Q8NDH2 2452 aa10.36□□□□□ -0.75
CLK3-214ENST00000564096 CR1P17927 2039 aa10.35□□□□□ -0.75
CLK3-214ENST00000564096 C5orf51A6NDU8 294 aa10.35□□□□□ -0.75
CLK3-214ENST00000564096 HMX3A6NHT5 357 aa10.35□□□□□ -0.75
CLK3-214ENST00000564096 DBX1A6NMT0 343 aa10.35□□□□□ -0.75
CLK3-214ENST00000564096 MARCH11A6NNE9 402 aa10.35□□□□□ -0.75
CLK3-214ENST00000564096 A8MV72 311 aaPredicted RBP10.35□□□□□ -0.75
CLK3-214ENST00000564096 FAM25EA8MYX2 175 aa10.35□□□□□ -0.75
CLK3-214ENST00000564096 SHOXO15266 292 aa10.35□□□□□ -0.75
CLK3-214ENST00000564096 HOXB5P09067 269 aa10.35□□□□□ -0.75
CLK3-214ENST00000564096 SULT1A3P0DMM9 295 aa10.35□□□□□ -0.75
CLK3-214ENST00000564096 SULT1A4P0DMN0 295 aa10.35□□□□□ -0.75
CLK3-214ENST00000564096 CD1BP29016 333 aa10.35□□□□□ -0.75
CLK3-214ENST00000564096 HABP2Q14520 560 aaPredicted RBP10.35□□□□□ -0.75
CLK3-214ENST00000564096 FCN2Q15485 313 aa10.35□□□□□ -0.75
CLK3-214ENST00000564096 GSG1LQ6UXU4 331 aa10.35□□□□□ -0.75
CLK3-214ENST00000564096 BRD3OSQ6XYD6 125 aa10.35□□□□□ -0.75
CLK3-214ENST00000564096 AKAP14Q86UN6 197 aa10.35□□□□□ -0.75
CLK3-214ENST00000564096 SELENOHQ8IZQ5 122 aaKnown RBP10.35□□□□□ -0.75
CLK3-214ENST00000564096 DMBX1Q8NFW5 382 aa10.35□□□□□ -0.75
CLK3-214ENST00000564096 VSTM2AQ8TAG5 236 aa10.35□□□□□ -0.75
CLK3-214ENST00000564096 CHAC2Q8WUX2 184 aa10.35□□□□□ -0.75
CLK3-214ENST00000564096 LSM10Q969L4 123 aaKnown RBP10.35□□□□□ -0.75
CLK3-214ENST00000564096 R3HDM4Q96D70 268 aa10.35□□□□□ -0.75
CLK3-214ENST00000564096 PDZD2O15018 2839 aa10.34□□□□□ -0.75
CLK3-214ENST00000564096 SPDEFO95238 335 aa10.34□□□□□ -0.75
CLK3-214ENST00000564096 AVPP01185 164 aa10.34□□□□□ -0.75
CLK3-214ENST00000564096 FSHBP01225 129 aa10.34□□□□□ -0.75
CLK3-214ENST00000564096 FAM106CPP0CH98 169 aa10.34□□□□□ -0.75
CLK3-214ENST00000564096 FOSL1P15407 271 aa10.34□□□□□ -0.75
CLK3-214ENST00000564096 HES1Q14469 280 aa10.34□□□□□ -0.75
CLK3-214ENST00000564096 VMA21Q3ZAQ7 101 aa10.34□□□□□ -0.75
CLK3-214ENST00000564096 ZNF585BQ52M93 769 aa10.34□□□□□ -0.75
CLK3-214ENST00000564096 TMEM177Q53S58 311 aa10.34□□□□□ -0.75
CLK3-214ENST00000564096 KLF17Q5JT82 389 aaPredicted RBP10.34□□□□□ -0.75
CLK3-214ENST00000564096 C9orf139Q6ZV77 190 aa10.34□□□□□ -0.75
CLK3-214ENST00000564096 H2BFWTQ7Z2G1 175 aa10.34□□□□□ -0.75
CLK3-214ENST00000564096 LHFPL5Q8TAF8 219 aa10.34□□□□□ -0.75
CLK3-214ENST00000564096 TSNAXQ99598 290 aaKnown RBP10.34□□□□□ -0.75
CLK3-214ENST00000564096 RNF5Q99942 180 aa10.34□□□□□ -0.75
CLK3-214ENST00000564096 YAE1D1Q9NRH1 226 aa10.34□□□□□ -0.75
CLK3-214ENST00000564096 MMP24Q9Y5R2 645 aa10.34□□□□□ -0.75
CLK3-214ENST00000564096 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.34□□□□□ -0.757e-15■■■■□ 20
CLK3-214ENST00000564096 IGHV3-72A0A0B4J1Y9 119 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 A0A0U1RQK1 487 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 C13orf42A0A1B0GVH6 325 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 FAM90A9PA6NNJ1 464 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 CCSO14618 274 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 PFDN1O60925 122 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 ADAP1O75689 374 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 VENTXO95231 258 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 MOSP00540 346 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 KRASP01116 189 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 IGKV1D-33P01593 117 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 IGKV1-33P01594 117 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 IGKV1-16P04430 117 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 GIPP09681 153 aaPredicted RBP10.33□□□□□ -0.76
CLK3-214ENST00000564096 CD99P14209 185 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 HLA-GP17693 338 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 G6PCP35575 357 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 SRP14P37108 136 aaKnown RBP10.33□□□□□ -0.76
CLK3-214ENST00000564096 LGALS7P47929 136 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 DYNLT3P51808 116 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 LINC00205P59089 165 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 RPS16P62249 146 aaKnown RBP10.33□□□□□ -0.76
CLK3-214ENST00000564096 CYCSP99999 105 aaKnown RBP10.33□□□□□ -0.76
CLK3-214ENST00000564096 KRTAP1-1Q07627 177 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 AANATQ16613 207 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 LRRC75BQ2VPJ9 315 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 LDLRAD2Q5SZI1 272 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 GGNBP1Q5YKI7 109 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 LYZL2Q7Z4W2 148 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 OR2T10Q8NGZ9 312 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 CFHR4Q92496 578 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 TMEM160Q9NX00 188 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 CACFD1Q9UGQ2 172 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 TEX15Q9BXT5 2789 aa10.33□□□□□ -0.76
CLK3-214ENST00000564096 ITPR2Q14571 2701 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms