RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 RAB26Q9ULW5 256 aa13.21□□□□□ -0.29
VPS9D1-203ENST00000563798 HUWE1Q7Z6Z7 4374 aaKnown RBP13.21□□□□□ -0.3
VPS9D1-203ENST00000563798 C3orf84H3BNL1 204 aa13.2□□□□□ -0.3
VPS9D1-203ENST00000563798 IGLV1-51P01701 117 aa13.2□□□□□ -0.3
VPS9D1-203ENST00000563798 DTYMKP23919 212 aa13.2□□□□□ -0.3
VPS9D1-203ENST00000563798 FGF9P31371 208 aaPredicted RBP13.2□□□□□ -0.3
VPS9D1-203ENST00000563798 DUTP33316 252 aaKnown RBP13.2□□□□□ -0.3
VPS9D1-203ENST00000563798 GABARAPL2P60520 117 aa13.2□□□□□ -0.3
VPS9D1-203ENST00000563798 CBX3Q13185 183 aa13.2□□□□□ -0.3
VPS9D1-203ENST00000563798 KLF5Q13887 457 aaPredicted RBP13.2□□□□□ -0.3
VPS9D1-203ENST00000563798 RTL8BQ17RB0 113 aa13.2□□□□□ -0.3
VPS9D1-203ENST00000563798 SBSPONQ8IVN8 264 aa13.2□□□□□ -0.3
VPS9D1-203ENST00000563798 BVESQ8NE79 360 aa13.2□□□□□ -0.3
VPS9D1-203ENST00000563798 OR5T1Q8NG75 326 aa13.2□□□□□ -0.3
VPS9D1-203ENST00000563798 TINAGL1Q9GZM7 467 aaPredicted RBP13.2□□□□□ -0.3
VPS9D1-203ENST00000563798 C13orf42A0A1B0GVH6 325 aa13.19□□□□□ -0.3
VPS9D1-203ENST00000563798 SHOXO15266 292 aa13.19□□□□□ -0.3
VPS9D1-203ENST00000563798 AADACP22760 399 aa13.19□□□□□ -0.3
VPS9D1-203ENST00000563798 UBE2KP61086 200 aa13.19□□□□□ -0.3
VPS9D1-203ENST00000563798 UBE2UQ5VVX9 321 aa13.19□□□□□ -0.3
VPS9D1-203ENST00000563798 MAFIPQ8WZ33 124 aa13.19□□□□□ -0.3
VPS9D1-203ENST00000563798 GINS4Q9BRT9 223 aa13.19□□□□□ -0.3
VPS9D1-203ENST00000563798 STUB1Q9UNE7 303 aa13.19□□□□□ -0.3
VPS9D1-203ENST00000563798 IGKV1D-8A0A087WSZ0 117 aa13.18□□□□□ -0.3
VPS9D1-203ENST00000563798 A0A0B4J203 849 aa13.18□□□□□ -0.3
VPS9D1-203ENST00000563798 A8MZ25 164 aa13.18□□□□□ -0.3
VPS9D1-203ENST00000563798 FRMD6-AS1P0C7T7 363 aa13.18□□□□□ -0.3
VPS9D1-203ENST00000563798 TALDO1P37837 337 aa13.18□□□□□ -0.3
VPS9D1-203ENST00000563798 ARFRP1Q13795 201 aa13.18□□□□□ -0.3
VPS9D1-203ENST00000563798 PRSS8Q16651 343 aa13.18□□□□□ -0.3
VPS9D1-203ENST00000563798 C22orf42Q6IC83 251 aa13.18□□□□□ -0.3
VPS9D1-203ENST00000563798 ZNF343Q6P1L6 599 aa13.18□□□□□ -0.3
VPS9D1-203ENST00000563798 Q8N1Y9 231 aa13.18□□□□□ -0.3
VPS9D1-203ENST00000563798 OSR1Q8TAX0 266 aaPredicted RBP13.18□□□□□ -0.3
VPS9D1-203ENST00000563798 USMG5Q96IX5 58 aa13.18□□□□□ -0.3
VPS9D1-203ENST00000563798 DCSTAMPQ9H295 470 aa13.18□□□□□ -0.3
VPS9D1-203ENST00000563798 ZNF355PQ9NSJ1 428 aa13.18□□□□□ -0.3
VPS9D1-203ENST00000563798 A0A075B6Q4 140 aa13.17□□□□□ -0.3
VPS9D1-203ENST00000563798 TRIM64CA6NLI5 447 aa13.17□□□□□ -0.3
VPS9D1-203ENST00000563798 LINC00473A8K010 186 aa13.17□□□□□ -0.3
VPS9D1-203ENST00000563798 NOTOA8MTQ0 251 aa13.17□□□□□ -0.3
VPS9D1-203ENST00000563798 CTXN2P0C2S0 81 aa13.17□□□□□ -0.3
VPS9D1-203ENST00000563798 VMA21Q3ZAQ7 101 aa13.17□□□□□ -0.3
VPS9D1-203ENST00000563798 HACD4Q5VWC8 232 aa13.17□□□□□ -0.3
VPS9D1-203ENST00000563798 IL34Q6ZMJ4 242 aa13.17□□□□□ -0.3
VPS9D1-203ENST00000563798 TPRA1Q86W33 373 aa13.17□□□□□ -0.3
VPS9D1-203ENST00000563798 ATG5Q9H1Y0 275 aa13.17□□□□□ -0.3
VPS9D1-203ENST00000563798 SIGLEC8Q9NYZ4 499 aa13.17□□□□□ -0.3
VPS9D1-203ENST00000563798 RBM7Q9Y580 266 aaKnown RBP13.17□□□□□ -0.3
VPS9D1-203ENST00000563798 MSGN1A6NI15 193 aa13.16□□□□□ -0.3
VPS9D1-203ENST00000563798 SCGNO76038 276 aa13.16□□□□□ -0.3
VPS9D1-203ENST00000563798 HLA-DQB1P01920 261 aa13.16□□□□□ -0.3
VPS9D1-203ENST00000563798 DYRK1AQ13627 763 aa13.16□□□□□ -0.3
VPS9D1-203ENST00000563798 CDNFQ49AH0 187 aa13.16□□□□□ -0.3
VPS9D1-203ENST00000563798 ADAD2Q8NCV1 583 aaKnown RBP13.16□□□□□ -0.3
VPS9D1-203ENST00000563798 RCHY1Q96PM5 261 aa13.16□□□□□ -0.3
VPS9D1-203ENST00000563798 TXNL4BQ9NX01 149 aaKnown RBP13.16□□□□□ -0.3
VPS9D1-203ENST00000563798 PEF1Q9UBV8 284 aaKnown RBP13.16□□□□□ -0.3
VPS9D1-203ENST00000563798 ELF5Q9UKW6 265 aaPredicted RBP13.16□□□□□ -0.3
VPS9D1-203ENST00000563798 OR2W1Q9Y3N9 320 aa13.16□□□□□ -0.3
VPS9D1-203ENST00000563798 SLC22A5O76082 557 aa13.15□□□□□ -0.3
VPS9D1-203ENST00000563798 CRYZL1O95825 349 aa13.15□□□□□ -0.3
VPS9D1-203ENST00000563798 OR9G9P0C7N8 305 aa13.15□□□□□ -0.3
VPS9D1-203ENST00000563798 OVCH2Q7RTZ1 564 aa13.15□□□□□ -0.3
VPS9D1-203ENST00000563798 ANKRD13BQ86YJ7 626 aa13.15□□□□□ -0.3
VPS9D1-203ENST00000563798 SPARTQ8N0X7 666 aa13.15□□□□□ -0.3
VPS9D1-203ENST00000563798 ZNF645Q8N7E2 425 aa13.15□□□□□ -0.3
VPS9D1-203ENST00000563798 OR9G4Q8NGQ1 327 aa13.15□□□□□ -0.3
VPS9D1-203ENST00000563798 SRSF12Q8WXF0 261 aaKnown RBP13.15□□□□□ -0.3
VPS9D1-203ENST00000563798 FCGR1BQ92637 280 aa13.15□□□□□ -0.3
VPS9D1-203ENST00000563798 C19orf73Q9NVV2 129 aa13.15□□□□□ -0.3
VPS9D1-203ENST00000563798 TRBV9A0A0B4J1U6 114 aa13.14□□□□□ -0.31
VPS9D1-203ENST00000563798 ANKRD34BA5PLL1 514 aa13.14□□□□□ -0.31
VPS9D1-203ENST00000563798 CREBL2O60519 120 aaPredicted RBP13.14□□□□□ -0.31
VPS9D1-203ENST00000563798 RBMXL2O75526 392 aaKnown RBP13.14□□□□□ -0.31
VPS9D1-203ENST00000563798 IGLV2-14P01704 120 aa13.14□□□□□ -0.31
VPS9D1-203ENST00000563798 CDK10Q15131 360 aa13.14□□□□□ -0.31
VPS9D1-203ENST00000563798 CNIH2Q6PI25 160 aa13.14□□□□□ -0.31
VPS9D1-203ENST00000563798 TM2D3Q9BRN9 247 aa13.14□□□□□ -0.31
VPS9D1-203ENST00000563798 YTHDF1Q9BYJ9 559 aaKnown RBP13.14□□□□□ -0.31
VPS9D1-203ENST00000563798 COA4Q9NYJ1 87 aa13.14□□□□□ -0.31
VPS9D1-203ENST00000563798 FAM223BA6NKX1 122 aa13.13□□□□□ -0.31
VPS9D1-203ENST00000563798 H0Y980 276 aa13.13□□□□□ -0.31
VPS9D1-203ENST00000563798 IGHV4-30-4P0DP06 118 aa13.13□□□□□ -0.31
VPS9D1-203ENST00000563798 TNXAQ16473 311 aa13.13□□□□□ -0.31
VPS9D1-203ENST00000563798 FAM223AQ8IWN6 122 aa13.13□□□□□ -0.31
VPS9D1-203ENST00000563798 MUC7Q8TAX7 377 aa13.13□□□□□ -0.31
VPS9D1-203ENST00000563798 PHB2Q99623 299 aa13.13□□□□□ -0.31
VPS9D1-203ENST00000563798 SPIN2AQ99865 258 aa13.13□□□□□ -0.31
VPS9D1-203ENST00000563798 SPIN2BQ9BPZ2 258 aa13.13□□□□□ -0.31
VPS9D1-203ENST00000563798 ST6GALNAC5Q9BVH7 336 aa13.13□□□□□ -0.31
VPS9D1-203ENST00000563798 ZMAT4Q9H898 229 aa13.13□□□□□ -0.31
VPS9D1-203ENST00000563798 ZNF430Q9H8G1 570 aaPredicted RBP13.13□□□□□ -0.31
VPS9D1-203ENST00000563798 RBMX2Q9Y388 322 aaKnown RBP13.13□□□□□ -0.31
VPS9D1-203ENST00000563798 TNCP24821 2201 aa13.12□□□□□ -0.31
VPS9D1-203ENST00000563798 TUSC2O75896 110 aa13.12□□□□□ -0.31
VPS9D1-203ENST00000563798 OR2A4O95047 310 aa13.12□□□□□ -0.31
VPS9D1-203ENST00000563798 SAA1P0DJI8 122 aaPredicted RBP13.12□□□□□ -0.31
VPS9D1-203ENST00000563798 MECP2P51608 486 aaKnown RBP13.12□□□□□ -0.31
VPS9D1-203ENST00000563798 SCAND1P57086 179 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms