RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 CLEC2AQ6UVW9 174 aa11.35□□□□□ -0.59
CSPG4P11-201ENST00000560634 SRSF12Q8WXF0 261 aaKnown RBP11.35□□□□□ -0.59
CSPG4P11-201ENST00000560634 PGLYRP4Q96LB8 373 aa11.35□□□□□ -0.59
CSPG4P11-201ENST00000560634 FAM206AQ9NX38 181 aa11.35□□□□□ -0.59
CSPG4P11-201ENST00000560634 TCF19Q9Y242 345 aa11.35□□□□□ -0.59
CSPG4P11-201ENST00000560634 IGKV1-8A0A0C4DH67 115 aa11.35□□□□□ -0.59
CSPG4P11-201ENST00000560634 PIN1P1O15428 100 aa11.35□□□□□ -0.59
CSPG4P11-201ENST00000560634 GCM2O75603 506 aaPredicted RBP11.35□□□□□ -0.59
CSPG4P11-201ENST00000560634 FCGR2BP31994 310 aaPredicted RBP11.35□□□□□ -0.59
CSPG4P11-201ENST00000560634 GFRA1P56159 465 aa11.35□□□□□ -0.59
CSPG4P11-201ENST00000560634 FAM106AQ4KMX7 169 aa11.35□□□□□ -0.59
CSPG4P11-201ENST00000560634 UNQ5815/PRO19632Q6UWF5 114 aa11.35□□□□□ -0.59
CSPG4P11-201ENST00000560634 H7C2G1 150 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 TSPOP30536 169 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 PCP4P48539 62 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 HILPDAQ9Y5L2 63 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 LHFPL6Q9Y693 200 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 TUBGCP6Q96RT7 1819 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 TGIF2-C20orf24A0A0A6YYL0 155 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 MOSPD3O75425 235 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 PLAUP00749 431 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 CX3CL1P78423 397 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 TTC32Q5I0X7 151 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 REC114Q7Z4M0 266 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 SMRP1Q8NCR6 262 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 OR4C13Q8NGP0 309 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 ZCCHC14Q8WYQ9 949 aaKnown RBP11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 TMEM186Q96B77 213 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 SFRP2Q96HF1 295 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 PARLQ9H300 379 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 TNRC6CQ9HCJ0 1690 aaKnown RBP11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 LOC390937A0A1W2PQ73 354 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 GDF9O60383 454 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 H2BFSP57053 126 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 FUT5Q11128 374 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 SLC25A53Q5H9E4 307 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 OR9G1Q8NH87 305 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 TMEM14DPA8MWL7 114 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 ADRA2AP08913 450 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 STAG3L3P0CL85 134 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 FGF5P12034 268 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 IL11P20809 199 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 CRYBB3P26998 211 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 SAPCD1Q5SSQ6 148 aa11.34□□□□□ -0.59
CSPG4P11-201ENST00000560634 IGHV1-45A0A0A0MS14 117 aa11.33□□□□□ -0.6
CSPG4P11-201ENST00000560634 hCG_38984A0A1B0GV85 526 aa11.33□□□□□ -0.6
CSPG4P11-201ENST00000560634 ZNF729A6NN14 1252 aaPredicted RBP11.33□□□□□ -0.6
CSPG4P11-201ENST00000560634 SLC25A17O43808 307 aa11.33□□□□□ -0.6
CSPG4P11-201ENST00000560634 ARL14EPLP0DKL9 152 aa11.33□□□□□ -0.6
CSPG4P11-201ENST00000560634 KIR2DL4Q99706 377 aa11.33□□□□□ -0.6
CSPG4P11-201ENST00000560634 CD8AP01732 235 aa11.33□□□□□ -0.6
CSPG4P11-201ENST00000560634 SOD3P08294 240 aa11.33□□□□□ -0.6
CSPG4P11-201ENST00000560634 SNRPCP09234 159 aaKnown RBP11.33□□□□□ -0.6
CSPG4P11-201ENST00000560634 IGHV3-72A0A0B4J1Y9 119 aa11.33□□□□□ -0.6
CSPG4P11-201ENST00000560634 LIPFP07098 398 aa11.33□□□□□ -0.6
CSPG4P11-201ENST00000560634 RNFT1Q5M7Z0 435 aa11.33□□□□□ -0.6
CSPG4P11-201ENST00000560634 TMEM136Q6ZRR5 245 aa11.33□□□□□ -0.6
CSPG4P11-201ENST00000560634 POC1AQ8NBT0 407 aa11.33□□□□□ -0.6
CSPG4P11-201ENST00000560634 HIST1H2BAQ96A08 127 aa11.33□□□□□ -0.6
CSPG4P11-201ENST00000560634 LPAR2Q9HBW0 351 aa11.33□□□□□ -0.6
CSPG4P11-201ENST00000560634 UNC13CQ8NB66 2214 aa11.33□□□□□ -0.6
CSPG4P11-201ENST00000560634 ZG16O60844 167 aa11.33□□□□□ -0.6
CSPG4P11-201ENST00000560634 NPBWR2P48146 333 aa11.33□□□□□ -0.6
CSPG4P11-201ENST00000560634 LCN2P80188 198 aa11.33□□□□□ -0.6
CSPG4P11-201ENST00000560634 TMEM187Q14656 261 aa11.33□□□□□ -0.6
CSPG4P11-201ENST00000560634 PCSK4Q6UW60 755 aa11.33□□□□□ -0.6
CSPG4P11-201ENST00000560634 NABP2Q9BQ15 211 aa11.33□□□□□ -0.6
CSPG4P11-201ENST00000560634 NPIPB9F8W1W9 429 aa11.32□□□□□ -0.6
CSPG4P11-201ENST00000560634 ZNF146Q15072 292 aa11.32□□□□□ -0.6
CSPG4P11-201ENST00000560634 PMS2CLQ68D20 193 aa11.32□□□□□ -0.6
CSPG4P11-201ENST00000560634 OR52M1Q8NGK5 317 aa11.32□□□□□ -0.6
CSPG4P11-201ENST00000560634 RAX2Q96IS3 184 aa11.32□□□□□ -0.6
CSPG4P11-201ENST00000560634 ZNF826PQ6ZT77 177 aa11.32□□□□□ -0.6
CSPG4P11-201ENST00000560634 FAM181AQ8N9Y4 354 aa11.32□□□□□ -0.6
CSPG4P11-201ENST00000560634 OR11H4Q8NGC9 324 aa11.32□□□□□ -0.6
CSPG4P11-201ENST00000560634 ZNF506Q5JVG8 444 aa11.32□□□□□ -0.6
CSPG4P11-201ENST00000560634 MRPL13Q9BYD1 178 aaKnown RBP11.32□□□□□ -0.6
CSPG4P11-201ENST00000560634 SPAARA0A1B0GVQ0 90 aa11.32□□□□□ -0.6
CSPG4P11-201ENST00000560634 OR11H12B2RN74 326 aa11.32□□□□□ -0.6
CSPG4P11-201ENST00000560634 TFPI2P48307 235 aa11.32□□□□□ -0.6
CSPG4P11-201ENST00000560634 OR11H1Q8NG94 326 aa11.32□□□□□ -0.6
CSPG4P11-201ENST00000560634 OR11H2Q8NH07 326 aa11.32□□□□□ -0.6
CSPG4P11-201ENST00000560634 SP7Q8TDD2 431 aaPredicted RBP11.32□□□□□ -0.6
CSPG4P11-201ENST00000560634 RARRES2Q99969 163 aa11.32□□□□□ -0.6
CSPG4P11-201ENST00000560634 SCN3AQ9NY46 2000 aa11.32□□□□□ -0.6
CSPG4P11-201ENST00000560634 MARF1Q9Y4F3 1742 aaKnown RBP11.31□□□□□ -0.6
CSPG4P11-201ENST00000560634 PAPPAQ13219 1627 aa11.31□□□□□ -0.6
CSPG4P11-201ENST00000560634 IFITM2Q01629 132 aa11.31□□□□□ -0.6
CSPG4P11-201ENST00000560634 G6PC2Q9NQR9 355 aa11.31□□□□□ -0.6
CSPG4P11-201ENST00000560634 CTSSP25774 331 aa11.31□□□□□ -0.6
CSPG4P11-201ENST00000560634 FXYD3Q14802 87 aa11.31□□□□□ -0.6
CSPG4P11-201ENST00000560634 CCDC88CQ9P219 2028 aa11.31□□□□□ -0.6
CSPG4P11-201ENST00000560634 A0A1B0GV72 72 aa11.31□□□□□ -0.6
CSPG4P11-201ENST00000560634 TMEM229AB2RXF0 380 aa11.31□□□□□ -0.6
CSPG4P11-201ENST00000560634 EIF3GO75821 320 aaKnown RBP eCLIP11.31□□□□□ -0.6
CSPG4P11-201ENST00000560634 FGF11Q92914 225 aa11.31□□□□□ -0.6
CSPG4P11-201ENST00000560634 GPR82Q96P67 336 aa11.31□□□□□ -0.6
CSPG4P11-201ENST00000560634 OPN3Q9H1Y3 402 aaPredicted RBP11.31□□□□□ -0.6
CSPG4P11-201ENST00000560634 GCHFRP30047 84 aa11.31□□□□□ -0.6
CSPG4P11-201ENST00000560634 GPX4P36969 197 aaPredicted RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms