RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 URM1Q9BTM9 101 aaKnown RBP13.38□□□□□ -0.27
TSPAN3-208ENST00000560514 DUSP21Q9H596 190 aa13.38□□□□□ -0.27
TSPAN3-208ENST00000560514 PLEKHJ1Q9NW61 149 aa13.38□□□□□ -0.27
TSPAN3-208ENST00000560514 MGAT4AQ9UM21 535 aa13.38□□□□□ -0.27
TSPAN3-208ENST00000560514 BMPR1BO00238 502 aa13.37□□□□□ -0.27
TSPAN3-208ENST00000560514 OR9G9P0C7N8 305 aa13.37□□□□□ -0.27
TSPAN3-208ENST00000560514 FOLR2P14207 255 aa13.37□□□□□ -0.27
TSPAN3-208ENST00000560514 ZBTB25P24278 435 aa13.37□□□□□ -0.27
TSPAN3-208ENST00000560514 PSMA1P25786 263 aaKnown RBP13.37□□□□□ -0.27
TSPAN3-208ENST00000560514 ATP5G2Q06055 141 aa13.37□□□□□ -0.27
TSPAN3-208ENST00000560514 TNFRSF9Q07011 255 aa13.37□□□□□ -0.27
TSPAN3-208ENST00000560514 PJVKQ0ZLH3 352 aa13.37□□□□□ -0.27
TSPAN3-208ENST00000560514 CBX3Q13185 183 aa13.37□□□□□ -0.27
TSPAN3-208ENST00000560514 MED22Q15528 200 aa13.37□□□□□ -0.27
TSPAN3-208ENST00000560514 OR10K2Q6IF99 312 aa13.37□□□□□ -0.27
TSPAN3-208ENST00000560514 MOB1BQ7L9L4 216 aa13.37□□□□□ -0.27
TSPAN3-208ENST00000560514 C6orf201Q7Z4U5 140 aa13.37□□□□□ -0.27
TSPAN3-208ENST00000560514 SVOPQ8N4V2 548 aa13.37□□□□□ -0.27
TSPAN3-208ENST00000560514 ZNF383Q8NA42 475 aa13.37□□□□□ -0.27
TSPAN3-208ENST00000560514 OR52B4Q8NGK2 314 aa13.37□□□□□ -0.27
TSPAN3-208ENST00000560514 UFD1Q92890 307 aa13.37□□□□□ -0.27
TSPAN3-208ENST00000560514 C11orf54Q9H0W9 315 aaPredicted RBP13.37□□□□□ -0.27
TSPAN3-208ENST00000560514 ZC4H2Q9NQZ6 224 aa13.37□□□□□ -0.27
TSPAN3-208ENST00000560514 SLC35D1Q9NTN3 355 aa13.37□□□□□ -0.27
TSPAN3-208ENST00000560514 HSF4Q9ULV5 492 aa13.37□□□□□ -0.27
TSPAN3-208ENST00000560514 C2orf70A6NJV1 201 aa13.36□□□□□ -0.27
TSPAN3-208ENST00000560514 FAM223BA6NKX1 122 aa13.36□□□□□ -0.27
TSPAN3-208ENST00000560514 BMI1P35226 326 aa13.36□□□□□ -0.27
TSPAN3-208ENST00000560514 PSMD7P51665 324 aa13.36□□□□□ -0.27
TSPAN3-208ENST00000560514 RHOGP84095 191 aa13.36□□□□□ -0.27
TSPAN3-208ENST00000560514 UNC119Q13432 240 aa13.36□□□□□ -0.27
TSPAN3-208ENST00000560514 ANKRD55Q3KP44 614 aa13.36□□□□□ -0.27
TSPAN3-208ENST00000560514 FAM223AQ8IWN6 122 aa13.36□□□□□ -0.27
TSPAN3-208ENST00000560514 TMEM217Q8N7C4 229 aa13.36□□□□□ -0.27
TSPAN3-208ENST00000560514 AGMATQ9BSE5 352 aa13.36□□□□□ -0.27
TSPAN3-208ENST00000560514 ERICH4A6NGS2 130 aa13.35□□□□□ -0.27
TSPAN3-208ENST00000560514 MSGN1A6NI15 193 aa13.35□□□□□ -0.27
TSPAN3-208ENST00000560514 ARL6IP5O75915 188 aa13.35□□□□□ -0.27
TSPAN3-208ENST00000560514 MAP2K4P45985 399 aa13.35□□□□□ -0.27
TSPAN3-208ENST00000560514 SSBP2P81877 361 aaPredicted RBP13.35□□□□□ -0.27
TSPAN3-208ENST00000560514 FAM209BQ5JX69 171 aa13.35□□□□□ -0.27
TSPAN3-208ENST00000560514 ADAD2Q8NCV1 583 aaKnown RBP13.35□□□□□ -0.27
TSPAN3-208ENST00000560514 HARBI1Q96MB7 349 aa13.35□□□□□ -0.27
TSPAN3-208ENST00000560514 AKIP1Q9NQ31 210 aa13.35□□□□□ -0.27
TSPAN3-208ENST00000560514 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.34□□□□□ -0.27
TSPAN3-208ENST00000560514 M0R1X1 148 aa13.34□□□□□ -0.27
TSPAN3-208ENST00000560514 SLC17A2O00624 439 aa13.34□□□□□ -0.27
TSPAN3-208ENST00000560514 SPRY2O43597 315 aa13.34□□□□□ -0.27
TSPAN3-208ENST00000560514 LINC00205P59089 165 aa13.34□□□□□ -0.27
TSPAN3-208ENST00000560514 EWSR1Q01844 656 aaKnown RBP eCLIP13.34□□□□□ -0.27
TSPAN3-208ENST00000560514 LIPKQ5VXJ0 399 aa13.34□□□□□ -0.27
TSPAN3-208ENST00000560514 ZNF57Q68EA5 555 aaPredicted RBP13.34□□□□□ -0.27
TSPAN3-208ENST00000560514 TMEM91Q6ZNR0 172 aa13.34□□□□□ -0.27
TSPAN3-208ENST00000560514 WFDC3Q8IUB2 231 aa13.34□□□□□ -0.27
TSPAN3-208ENST00000560514 PTX4Q96A99 478 aa13.34□□□□□ -0.27
TSPAN3-208ENST00000560514 LPAR5Q9H1C0 372 aa13.34□□□□□ -0.27
TSPAN3-208ENST00000560514 OR1A1Q9P1Q5 309 aa13.34□□□□□ -0.27
TSPAN3-208ENST00000560514 ZNF230Q9UIE0 474 aaPredicted RBP13.34□□□□□ -0.27
TSPAN3-208ENST00000560514 TP53TG1Q9Y2A0 90 aa13.34□□□□□ -0.27
TSPAN3-208ENST00000560514 RYR1P21817 5038 aa13.34□□□□□ -0.27
TSPAN3-208ENST00000560514 SHOXO15266 292 aa13.33□□□□□ -0.28
TSPAN3-208ENST00000560514 RBMXL2O75526 392 aaKnown RBP13.33□□□□□ -0.28
TSPAN3-208ENST00000560514 IGLV2-23P01705 113 aa13.33□□□□□ -0.28
TSPAN3-208ENST00000560514 APOC4P55056 127 aa13.33□□□□□ -0.28
TSPAN3-208ENST00000560514 MLLT11Q13015 90 aaPredicted RBP13.33□□□□□ -0.28
TSPAN3-208ENST00000560514 TNXAQ16473 311 aa13.33□□□□□ -0.28
TSPAN3-208ENST00000560514 TMEM203Q969S6 136 aa13.33□□□□□ -0.28
TSPAN3-208ENST00000560514 DNAH10Q8IVF4 4471 aa13.33□□□□□ -0.28
TSPAN3-208ENST00000560514 A0A0A6YYD4 124 aa13.32□□□□□ -0.28
TSPAN3-208ENST00000560514 FOXI3A8MTJ6 420 aaPredicted RBP13.32□□□□□ -0.28
TSPAN3-208ENST00000560514 RGS10O43665 173 aa13.32□□□□□ -0.28
TSPAN3-208ENST00000560514 GGCTO75223 188 aaKnown RBP13.32□□□□□ -0.28
TSPAN3-208ENST00000560514 PROP1O75360 226 aa13.32□□□□□ -0.28
TSPAN3-208ENST00000560514 PRH1P02810 166 aa13.32□□□□□ -0.28
TSPAN3-208ENST00000560514 CRYGBP07316 175 aa13.32□□□□□ -0.28
TSPAN3-208ENST00000560514 ATF4P18848 351 aaPredicted RBP13.32□□□□□ -0.28
TSPAN3-208ENST00000560514 TMEM50BP56557 158 aa13.32□□□□□ -0.28
TSPAN3-208ENST00000560514 Q6ZWC4 215 aa13.32□□□□□ -0.28
TSPAN3-208ENST00000560514 PRSS48Q7RTY5 328 aa13.32□□□□□ -0.28
TSPAN3-208ENST00000560514 TMEM61Q8N0U2 210 aa13.32□□□□□ -0.28
TSPAN3-208ENST00000560514 PHLDA1Q8WV24 401 aaPredicted RBP13.32□□□□□ -0.28
TSPAN3-208ENST00000560514 NICN1Q9BSH3 213 aa13.32□□□□□ -0.28
TSPAN3-208ENST00000560514 PLGRKTQ9HBL7 147 aa13.32□□□□□ -0.28
TSPAN3-208ENST00000560514 ACOT13Q9NPJ3 140 aa13.32□□□□□ -0.28
TSPAN3-208ENST00000560514 SELENOKQ9Y6D0 94 aa13.32□□□□□ -0.28
TSPAN3-208ENST00000560514 KIAA1109Q2LD37 5005 aa13.32□□□□□ -0.28
TSPAN3-208ENST00000560514 PPP5D1E7EU14 171 aa13.31□□□□□ -0.28
TSPAN3-208ENST00000560514 LGALS9O00182 355 aa13.31□□□□□ -0.28
TSPAN3-208ENST00000560514 SOCS1O15524 211 aa13.31□□□□□ -0.28
TSPAN3-208ENST00000560514 SCAF4O95104 1147 aaKnown RBP13.31□□□□□ -0.28
TSPAN3-208ENST00000560514 EDN2P20800 178 aa13.31□□□□□ -0.28
TSPAN3-208ENST00000560514 CBLN1P23435 193 aa13.31□□□□□ -0.28
TSPAN3-208ENST00000560514 HLA-DRB3P79483 266 aa13.31□□□□□ -0.28
TSPAN3-208ENST00000560514 RAB11BQ15907 218 aa13.31□□□□□ -0.28
TSPAN3-208ENST00000560514 DEFB135Q30KP9 77 aa13.31□□□□□ -0.28
TSPAN3-208ENST00000560514 VMA21Q3ZAQ7 101 aa13.31□□□□□ -0.28
TSPAN3-208ENST00000560514 TM4SF20Q53R12 229 aa13.31□□□□□ -0.28
TSPAN3-208ENST00000560514 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.31□□□□□ -0.28
TSPAN3-208ENST00000560514 NECAP1Q8NC96 275 aa13.31□□□□□ -0.28
TSPAN3-208ENST00000560514 ACOT12Q8WYK0 555 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms