RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 ETV6P41212 452 aa10.28□□□□□ -0.76
NEDD8-208ENST00000560427 UCP3P55916 312 aa10.28□□□□□ -0.76
NEDD8-208ENST00000560427 LINC00205P59089 165 aa10.28□□□□□ -0.76
NEDD8-208ENST00000560427 KRTAP10-3P60369 221 aa10.28□□□□□ -0.76
NEDD8-208ENST00000560427 SLC35B1P78383 322 aa10.28□□□□□ -0.76
NEDD8-208ENST00000560427 MEF2DQ14814 521 aa10.28□□□□□ -0.76
NEDD8-208ENST00000560427 PLGLAQ15195 96 aa10.28□□□□□ -0.76
NEDD8-208ENST00000560427 FOXB2Q5VYV0 432 aa10.28□□□□□ -0.76
NEDD8-208ENST00000560427 CCDC190Q86UF4 302 aa10.28□□□□□ -0.76
NEDD8-208ENST00000560427 CMTM1Q8IZ96 169 aa10.28□□□□□ -0.76
NEDD8-208ENST00000560427 MFSD4AQ8N468 514 aa10.28□□□□□ -0.76
NEDD8-208ENST00000560427 COMMD1Q8N668 190 aa10.28□□□□□ -0.76
NEDD8-208ENST00000560427 OR4S2Q8NH73 311 aa10.28□□□□□ -0.76
NEDD8-208ENST00000560427 CD300LFQ8TDQ1 290 aa10.28□□□□□ -0.76
NEDD8-208ENST00000560427 TCTEX1D2Q8WW35 142 aa10.28□□□□□ -0.76
NEDD8-208ENST00000560427 FXYD6Q9H0Q3 95 aa10.28□□□□□ -0.76
NEDD8-208ENST00000560427 METTL1Q9UBP6 276 aaKnown RBP10.28□□□□□ -0.76
NEDD8-208ENST00000560427 PSMB11A5LHX3 300 aa10.27□□□□□ -0.77
NEDD8-208ENST00000560427 GPR31O00270 319 aa10.27□□□□□ -0.77
NEDD8-208ENST00000560427 SHOXO15266 292 aa10.27□□□□□ -0.77
NEDD8-208ENST00000560427 CREBL2O60519 120 aaPredicted RBP10.27□□□□□ -0.77
NEDD8-208ENST00000560427 FCGR3BO75015 233 aa10.27□□□□□ -0.77
NEDD8-208ENST00000560427 RAB3DO95716 219 aa10.27□□□□□ -0.77
NEDD8-208ENST00000560427 CRYZL1O95825 349 aa10.27□□□□□ -0.77
NEDD8-208ENST00000560427 CD3DP04234 171 aa10.27□□□□□ -0.77
NEDD8-208ENST00000560427 CNTFRP26992 372 aa10.27□□□□□ -0.77
NEDD8-208ENST00000560427 GNRHRP30968 328 aa10.27□□□□□ -0.77
NEDD8-208ENST00000560427 PSG5Q15238 335 aa10.27□□□□□ -0.77
NEDD8-208ENST00000560427 VMA21Q3ZAQ7 101 aa10.27□□□□□ -0.77
NEDD8-208ENST00000560427 SPANXN2Q5MJ10 180 aa10.27□□□□□ -0.77
NEDD8-208ENST00000560427 STEAP1BQ6NZ63 245 aa10.27□□□□□ -0.77
NEDD8-208ENST00000560427 ZNF818PQ6ZRF7 136 aa10.27□□□□□ -0.77
NEDD8-208ENST00000560427 CENPVQ7Z7K6 275 aaPredicted RBP10.27□□□□□ -0.77
NEDD8-208ENST00000560427 SLC38A6Q8IZM9 456 aa10.27□□□□□ -0.77
NEDD8-208ENST00000560427 STPG2Q8N412 459 aa10.27□□□□□ -0.77
NEDD8-208ENST00000560427 OR4X2Q8NGF9 303 aa10.27□□□□□ -0.77
NEDD8-208ENST00000560427 DEDD2Q8WXF8 326 aa10.27□□□□□ -0.77
NEDD8-208ENST00000560427 AIFM2Q9BRQ8 373 aa10.27□□□□□ -0.77
NEDD8-208ENST00000560427 FBXL15Q9H469 300 aa10.27□□□□□ -0.77
NEDD8-208ENST00000560427 V9GYH0 126 aa10.27□□□□□ -0.77
NEDD8-208ENST00000560427 IGHV7-81A0A0B4J1V7 117 aa10.26□□□□□ -0.77
NEDD8-208ENST00000560427 M0QYG6 137 aa10.26□□□□□ -0.77
NEDD8-208ENST00000560427 M0QZ24 198 aa10.26□□□□□ -0.77
NEDD8-208ENST00000560427 IGLV2-23P01705 113 aa10.26□□□□□ -0.77
NEDD8-208ENST00000560427 OPN1MWP04001 364 aa10.26□□□□□ -0.77
NEDD8-208ENST00000560427 AKAIN1P0CW23 69 aa10.26□□□□□ -0.77
NEDD8-208ENST00000560427 OPN1MW2P0DN77 364 aa10.26□□□□□ -0.77
NEDD8-208ENST00000560427 OPN1MW3P0DN78 364 aa10.26□□□□□ -0.77
NEDD8-208ENST00000560427 VDAC1P21796 283 aa10.26□□□□□ -0.77
NEDD8-208ENST00000560427 ECI1P42126 302 aa10.26□□□□□ -0.77
NEDD8-208ENST00000560427 UBE2KP61086 200 aa10.26□□□□□ -0.77
NEDD8-208ENST00000560427 RPL30P62888 115 aaKnown RBP10.26□□□□□ -0.77
NEDD8-208ENST00000560427 LHFPL1Q86WI0 220 aa10.26□□□□□ -0.77
NEDD8-208ENST00000560427 TCTEX1D1Q8N7M0 179 aa10.26□□□□□ -0.77
NEDD8-208ENST00000560427 POC5Q8NA72 575 aa10.26□□□□□ -0.77
NEDD8-208ENST00000560427 OR5AU1Q8NGC0 362 aa10.26□□□□□ -0.77
NEDD8-208ENST00000560427 OR6Q1Q8NGQ2 317 aa10.26□□□□□ -0.77
NEDD8-208ENST00000560427 ZNF486Q96H40 463 aaPredicted RBP10.26□□□□□ -0.77
NEDD8-208ENST00000560427 HSPB9Q9BQS6 159 aa10.26□□□□□ -0.77
NEDD8-208ENST00000560427 TINAGL1Q9GZM7 467 aaPredicted RBP10.26□□□□□ -0.77
NEDD8-208ENST00000560427 OR51J1Q9H342 316 aa10.26□□□□□ -0.77
NEDD8-208ENST00000560427 ANKRD20A5PA0PJZ0 165 aa10.25□□□□□ -0.77
NEDD8-208ENST00000560427 TNFSF12O43508 249 aa10.25□□□□□ -0.77
NEDD8-208ENST00000560427 SLC25A17O43808 307 aa10.25□□□□□ -0.77
NEDD8-208ENST00000560427 CRYGBP07316 175 aa10.25□□□□□ -0.77
NEDD8-208ENST00000560427 CRIP2P52943 208 aaPredicted RBP10.25□□□□□ -0.77
NEDD8-208ENST00000560427 AP3S2P59780 193 aa10.25□□□□□ -0.77
NEDD8-208ENST00000560427 SRSF4Q08170 494 aaKnown RBP10.25□□□□□ -0.77
NEDD8-208ENST00000560427 C2orf68Q2NKX9 166 aa10.25□□□□□ -0.77
NEDD8-208ENST00000560427 PRR31Q5SQ13 230 aa10.25□□□□□ -0.77
NEDD8-208ENST00000560427 AADACL3Q5VUY0 350 aa10.25□□□□□ -0.77
NEDD8-208ENST00000560427 ZNF562Q6V9R5 426 aa10.25□□□□□ -0.77
NEDD8-208ENST00000560427 PPP1R27Q86WC6 154 aa10.25□□□□□ -0.77
NEDD8-208ENST00000560427 NDUFA11Q86Y39 141 aa10.25□□□□□ -0.77
NEDD8-208ENST00000560427 TEX45Q8NA69 505 aa10.25□□□□□ -0.77
NEDD8-208ENST00000560427 VSTM2AQ8TAG5 236 aa10.25□□□□□ -0.77
NEDD8-208ENST00000560427 RBMXL1Q96E39 390 aaKnown RBP10.25□□□□□ -0.77
NEDD8-208ENST00000560427 RSRP1Q9BUV0 290 aa10.25□□□□□ -0.77
NEDD8-208ENST00000560427 BATF3Q9NR55 127 aa10.25□□□□□ -0.77
NEDD8-208ENST00000560427 FAM212BQ9NTI7 297 aaPredicted RBP10.25□□□□□ -0.77
NEDD8-208ENST00000560427 A6NHS1 94 aa10.24□□□□□ -0.77
NEDD8-208ENST00000560427 SRRM4A7MD48 611 aaKnown RBP10.24□□□□□ -0.77
NEDD8-208ENST00000560427 DISC1C4P0D8 188 aa10.24□□□□□ -0.77
NEDD8-208ENST00000560427 ATP6V0E1O15342 81 aa10.24□□□□□ -0.77
NEDD8-208ENST00000560427 PGLYRP1O75594 196 aaPredicted RBP10.24□□□□□ -0.77
NEDD8-208ENST00000560427 CA2P00918 260 aa10.24□□□□□ -0.77
NEDD8-208ENST00000560427 HRASP01112 189 aa10.24□□□□□ -0.77
NEDD8-208ENST00000560427 FAUP35544 74 aaKnown RBP10.24□□□□□ -0.77
NEDD8-208ENST00000560427 CX3CL1P78423 397 aa10.24□□□□□ -0.77
NEDD8-208ENST00000560427 CD83Q01151 205 aa10.24□□□□□ -0.77
NEDD8-208ENST00000560427 SURF2Q15527 256 aaPredicted RBP10.24□□□□□ -0.77
NEDD8-208ENST00000560427 ZNF79Q15937 498 aa10.24□□□□□ -0.77
NEDD8-208ENST00000560427 PYDC2Q56P42 97 aa10.24□□□□□ -0.77
NEDD8-208ENST00000560427 TEX38Q6PEX7 206 aa10.24□□□□□ -0.77
NEDD8-208ENST00000560427 LINC00299Q6ZSB3 139 aa10.24□□□□□ -0.77
NEDD8-208ENST00000560427 SPAG16Q8N0X2 631 aa10.24□□□□□ -0.77
NEDD8-208ENST00000560427 Q8N402 240 aa10.24□□□□□ -0.77
NEDD8-208ENST00000560427 TERB2Q8NHR7 220 aa10.24□□□□□ -0.77
NEDD8-208ENST00000560427 TRIM63Q969Q1 353 aa10.24□□□□□ -0.77
NEDD8-208ENST00000560427 NOL4LQ96MY1 436 aaPredicted RBP10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms