RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 PTPRBP23467 1997 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 C11orf86A6NJI1 115 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 A8MUN3 132 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 ODF3BA8MYP8 253 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 INMT-MINDY4F8WBC2 141 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 SLC17A3O00476 420 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 UBE2L6O14933 153 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 CRTAPO75718 401 aaPredicted RBP0.74□□□□□ -2.29
USP3-209ENST00000558925 AHSA1O95433 338 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 MT-CO2P00403 227 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 IGHV1-69P01742 117 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 TNNC2P02585 160 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 RPS17P08708 135 aaKnown RBP0.74□□□□□ -2.29
USP3-209ENST00000558925 GZMHP20718 246 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 CSRP1P21291 193 aaKnown RBP0.74□□□□□ -2.29
USP3-209ENST00000558925 BLVRBP30043 206 aaPredicted RBP0.74□□□□□ -2.29
USP3-209ENST00000558925 CCR7P32248 378 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 GABRA4P48169 554 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 AKR1C2P52895 323 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 TAS2R45P59539 299 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 NAA20P61599 178 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 ZNF181Q2M3W8 571 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 TMEM176BQ3YBM2 270 aaPredicted RBP0.74□□□□□ -2.29
USP3-209ENST00000558925 OGFRL1Q5TC84 451 aaPredicted RBP0.74□□□□□ -2.29
USP3-209ENST00000558925 DCXRQ7Z4W1 244 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 SLC51BQ86UW2 128 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 KRTAP13-1Q8IUC0 172 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 UBL4BQ8N7F7 174 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 OR2D3Q8NGH3 330 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 SGMS2Q8NHU3 365 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 ITFG2Q969R8 447 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 C12orf43Q96C57 262 aaKnown RBP0.74□□□□□ -2.29
USP3-209ENST00000558925 GNPNAT1Q96EK6 184 aaPredicted RBP0.74□□□□□ -2.29
USP3-209ENST00000558925 CCL13Q99616 98 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 NKX6-2Q9C056 277 aaPredicted RBP0.74□□□□□ -2.29
USP3-209ENST00000558925 LRRC19Q9H756 370 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 ZNF337Q9Y3M9 751 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 MALRD1Q5VYJ5 2156 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 THSD7AQ9UPZ6 1657 aa0.74□□□□□ -2.29
USP3-209ENST00000558925 CCDC88AQ3V6T2 1871 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 ZFYVE9O95405 1425 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 SIPA1L1O43166 1804 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 A0A087WUU8 490 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 IGHV3-15A0A0B4J1V0 119 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 TMEM269A0A1B0GVZ9 245 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 DHRS12A0PJE2 317 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 C17orf51A8MQB3 221 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 C9JCJ5 164 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 FNDC10F2Z333 226 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 ACOX3O15254 700 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 TRAPPC3O43617 180 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 E2F6O75461 281 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 APOMO95445 188 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 TFPTP0C1Z6 253 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 GZMBP10144 247 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 HIST1H1EP10412 219 aaKnown RBP0.73□□□□□ -2.29
USP3-209ENST00000558925 DEFA4P12838 97 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 ALOX5APP20292 161 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 ATP6V0CP27449 155 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 CCR2P41597 374 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 GZMMP51124 257 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 AP2S1P53680 142 aaPredicted RBP0.73□□□□□ -2.29
USP3-209ENST00000558925 DEFA1P59665 94 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 TNFAIP6P98066 277 aaPredicted RBP0.73□□□□□ -2.29
USP3-209ENST00000558925 EBPQ15125 230 aaKnown RBP0.73□□□□□ -2.29
USP3-209ENST00000558925 SS18Q15532 418 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 IMPG1Q17R60 797 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 PLPPR5Q32ZL2 321 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 ACSM3Q53FZ2 586 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 TNFAIP8L3Q5GJ75 292 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 FAM201AQ5SY85 155 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 CCDC122Q5T0U0 273 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 CHCHD2P9Q5T1J5 151 aaPredicted RBP0.73□□□□□ -2.29
USP3-209ENST00000558925 HIST2H3PS2Q5TEC6 136 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 FAM78BQ5VT40 261 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 LPCAT4Q643R3 524 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 ALKAL1Q6UXT8 129 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 TMPPEQ6ZT21 453 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 CCDC121Q6ZUS5 278 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 TMEM86BQ8N661 226 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 OR8K1Q8NGG5 319 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 OR13C8Q8NGS7 320 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 PPP1R14BQ96C90 147 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 MS4A6EQ96DS6 147 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 CPNE2Q96FN4 548 aaPredicted RBP0.73□□□□□ -2.29
USP3-209ENST00000558925 DIRAS2Q96HU8 199 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 PECRQ9BY49 303 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 MRPS26Q9BYN8 205 aaKnown RBP0.73□□□□□ -2.29
USP3-209ENST00000558925 TUBA4BQ9H853 241 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 TXNL4BQ9NX01 149 aaKnown RBP0.73□□□□□ -2.29
USP3-209ENST00000558925 CMTM6Q9NX76 183 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 PKIGQ9Y2B9 76 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 RBM7Q9Y580 266 aaKnown RBP0.73□□□□□ -2.29
USP3-209ENST00000558925 RALGAPA2Q2PPJ7 1873 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 ADGRB3O60242 1522 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 SLX4Q8IY92 1834 aa0.73□□□□□ -2.29
USP3-209ENST00000558925 C9orf84Q5VXU9 1444 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 ABCC12Q96J65 1359 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 PTPRSQ13332 1948 aa0.72□□□□□ -2.29
USP3-209ENST00000558925 GREB1Q4ZG55 1949 aa0.72□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms